Strain Fitness in Sphingobium sp. HT1-2 around GFF2273

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,299,338	-		GFF2270	0.72	-1.3
2,299,364	-		GFF2270	0.75	-2.1
2,299,377	+		GFF2270	0.77	-1.6
2,299,404	+		GFF2270	0.79	-3.1
2,299,414	+		GFF2270	0.81	-2.9
2,299,414	+		GFF2270	0.81	-0.5
2,299,414	+		GFF2270	0.81	-2.4
2,299,414	+		GFF2270	0.81	-1.4
2,299,414	+		GFF2270	0.81	-2.2
2,299,414	+		GFF2270	0.81	-3.0
2,299,422	-		GFF2270	0.81	-2.8
2,299,422	-		GFF2270	0.81	-2.2
2,299,422	-		GFF2270	0.81	-3.2
2,299,422	-		GFF2270	0.81	-2.3
2,299,422	-		GFF2270	0.81	-1.4
2,299,422	-		GFF2270	0.81	-0.0
2,299,456	+		GFF2270	0.85	-2.8
2,299,460	+		GFF2270	0.85	-2.6
2,299,460	+		GFF2270	0.85	-3.1
2,299,460	+		GFF2270	0.85	-2.3
2,299,464	-		GFF2270	0.86	-1.9
2,299,468	-		GFF2270	0.86	-1.7
2,299,480	-		GFF2270	0.88	-1.7
2,299,489	-		GFF2270	0.88	-2.5
2,299,516	+				-1.0
2,299,524	-				-2.0
2,299,546	+				-0.8
2,299,591	+				-1.9
2,299,599	-				-1.0
2,299,599	-				-1.7
2,299,610	-				+0.0
2,299,614	-				-0.9
2,299,644	+				-0.3
2,299,652	-				-1.4
2,299,652	-				-0.1
2,299,678	+				-2.1
2,299,687	-				-1.7
2,299,688	+				-0.1
2,299,692	+		GFF2271	0.11	-0.6
2,299,700	-		GFF2271	0.15	+0.1
2,299,761	+		GFF2271	0.44	-2.1
2,299,761	+		GFF2271	0.44	-0.6
2,299,769	-		GFF2271	0.48	-0.6
2,299,790	+		GFF2271	0.58	+0.2
2,299,832	+		GFF2271	0.78	+1.0
2,299,833	-		GFF2271	0.78	+1.0
2,299,835	-		GFF2271	0.79	-0.9
2,299,839	+		GFF2271	0.81	+1.2
2,299,848	-		GFF2271	0.85	-0.4
2,299,857	-		GFF2271	0.90	-1.1
2,299,863	+				-1.2
2,299,871	-				+0.9
2,299,871	-				-1.3
2,299,871	-				-2.1
2,299,871	-				-1.4
2,299,873	+				+0.2
2,299,900	+				-0.2
2,299,900	+				-2.0
2,299,900	+				-0.8
2,299,904	+				-0.9
2,299,908	-				+1.6
2,299,919	-				-0.3
2,299,919	-				+0.3
2,299,922	+				-1.2
2,299,953	+				+0.5
2,299,964	+				+0.2
2,299,982	+				-0.6
2,300,001	-				-2.0
2,300,028	+				+0.6
2,300,036	-				-0.9
2,300,036	-				-1.1
2,300,039	+				-1.7
2,300,044	+				+0.7
2,300,044	+				-2.9
2,300,044	+				+0.4
2,300,045	+				+1.3
2,300,047	-				-1.1
2,300,047	-				-1.5
2,300,052	-				-0.8
2,300,052	-				+0.7
2,300,055	+				+1.5
2,300,069	+				-0.2
2,300,069	+				-1.3
2,300,070	+				-0.1
2,300,077	-				+0.2
2,300,090	-				+0.4
2,300,092	-				+0.0
2,300,100	+				+1.0
2,300,102	-				-0.2
2,300,113	-				-0.1
2,300,161	-		GFF2272	0.34	-0.0
2,300,173	+		GFF2272	0.41	-0.1
2,300,181	+		GFF2272	0.46	-1.0
2,300,181	-		GFF2272	0.46	-0.2
2,300,190	-		GFF2272	0.51	+1.8
2,300,192	+		GFF2272	0.52	-2.7
2,300,192	+		GFF2272	0.52	-0.7
2,300,192	+		GFF2272	0.52	-0.4
2,300,192	+		GFF2272	0.52	-1.8
2,300,192	+		GFF2272	0.52	+0.1
2,300,194	-		GFF2272	0.53	-1.0
2,300,197	+		GFF2272	0.55	+0.1
2,300,200	-		GFF2272	0.57	-0.9
2,300,200	-		GFF2272	0.57	+1.2
2,300,200	-		GFF2272	0.57	+0.5
2,300,205	-		GFF2272	0.60	-0.2
2,300,205	-		GFF2272	0.60	-1.3
2,300,221	+		GFF2272	0.69	-0.9
2,300,223	-		GFF2272	0.70	-1.0
2,300,239	+		GFF2272	0.80	-0.1
2,300,247	-		GFF2272	0.84	-1.7
2,300,249	-		GFF2272	0.85	-0.8
2,300,306	+				+0.5
2,300,319	+				-1.5
2,300,332	-				+1.7
2,300,332	-				-0.5
2,300,356	+				+0.1
2,300,373	+				+0.3
2,300,373	+				-0.9
2,300,394	+				+0.7
2,300,399	+				+0.3
2,300,407	-				-0.2
2,300,409	+				+1.4
2,300,409	+				+1.5
2,300,409	+				+1.4
2,300,409	+				+0.4
2,300,417	-				-0.4
2,300,417	-				-1.2
2,300,417	-				+0.1
2,300,417	-				+0.4
2,300,419	+				-0.2
2,300,435	+				-2.3
2,300,443	-				-0.2
2,300,462	+				+0.8
2,300,470	-		GFF2273	0.10	+1.0
2,300,494	+		GFF2273	0.12	+1.4
2,300,550	+		GFF2273	0.16	-0.5
2,300,551	+		GFF2273	0.16	+0.9
2,300,551	+		GFF2273	0.16	-1.3
2,300,560	+		GFF2273	0.17	-0.4
2,300,575	-		GFF2273	0.18	+0.2
2,300,578	+		GFF2273	0.18	+1.2
2,300,578	+		GFF2273	0.18	+0.2
2,300,586	-		GFF2273	0.19	+0.2
2,300,586	-		GFF2273	0.19	+0.9
2,300,586	-		GFF2273	0.19	+0.2
2,300,586	-		GFF2273	0.19	-1.5
2,300,586	-		GFF2273	0.19	+0.1
2,300,599	+		GFF2273	0.20	+1.4
2,300,632	+		GFF2273	0.22	+0.4
2,300,638	-		GFF2273	0.23	-0.3
2,300,647	-		GFF2273	0.23	-0.3
2,300,661	+		GFF2273	0.25	-1.7
2,300,726	-		GFF2273	0.29	+0.5
2,300,728	+		GFF2273	0.30	-2.3
2,300,753	-		GFF2273	0.31	+1.5
2,300,753	-		GFF2273	0.31	-1.7
2,300,763	+		GFF2273	0.32	+0.6
2,300,769	+		GFF2273	0.33	-0.6
2,300,775	+		GFF2273	0.33	+0.9
2,300,783	-		GFF2273	0.34	+1.3
2,300,785	+		GFF2273	0.34	-1.2
2,300,791	-		GFF2273	0.34	+0.4
2,300,793	-		GFF2273	0.34	-1.0
2,300,795	-		GFF2273	0.35	-0.9
2,300,802	+		GFF2273	0.35	+0.5
2,300,802	+		GFF2273	0.35	-1.1
2,300,809	+		GFF2273	0.36	+0.3
2,300,809	+		GFF2273	0.36	-0.3
2,300,810	-		GFF2273	0.36	-2.1
2,300,810	-		GFF2273	0.36	-0.1
2,300,810	-		GFF2273	0.36	-0.3
2,300,817	-		GFF2273	0.36	+0.7
2,300,837	+		GFF2273	0.38	-1.1
2,300,853	+		GFF2273	0.39	+0.3
2,300,876	+		GFF2273	0.41	-1.5
2,300,901	-		GFF2273	0.43	-1.0
2,300,938	-		GFF2273	0.45	+0.6
2,300,954	+		GFF2273	0.47	-1.0
2,300,955	-		GFF2273	0.47	+0.8
2,300,960	+		GFF2273	0.47	-0.3
2,300,966	+		GFF2273	0.47	+0.7
2,300,974	-		GFF2273	0.48	-0.7
2,300,980	-		GFF2273	0.49	-0.2
2,300,986	+		GFF2273	0.49	-1.6
2,300,991	+		GFF2273	0.49	+0.7
2,300,991	+		GFF2273	0.49	+1.6
2,300,991	+		GFF2273	0.49	+0.1
2,300,999	-		GFF2273	0.50	-2.2
2,300,999	-		GFF2273	0.50	-0.8
2,300,999	-		GFF2273	0.50	-2.1
2,300,999	-		GFF2273	0.50	-1.6
2,301,015	+		GFF2273	0.51	+0.1
2,301,066	+		GFF2273	0.55	-1.4
2,301,072	+		GFF2273	0.55	+0.9
2,301,080	-		GFF2273	0.56	+0.1
2,301,107	+		GFF2273	0.58	+0.1
2,301,117	+		GFF2273	0.59	+0.8
2,301,125	-		GFF2273	0.59	-1.5
2,301,125	-		GFF2273	0.59	+0.7
2,301,150	-		GFF2273	0.61	-0.1
2,301,159	+		GFF2273	0.62	+1.3
2,301,167	-		GFF2273	0.63	-0.8
2,301,170	-		GFF2273	0.63	-0.5
2,301,204	+		GFF2273	0.65	+0.3
2,301,213	-		GFF2273	0.66	-1.4
2,301,214	+		GFF2273	0.66	+0.7
2,301,272	+		GFF2273	0.71	-0.2
2,301,272	+		GFF2273	0.71	-1.4
2,301,280	-		GFF2273	0.71	-1.5
2,301,280	-		GFF2273	0.71	-1.5
2,301,280	-		GFF2273	0.71	-0.2
2,301,280	-		GFF2273	0.71	+0.0
2,301,296	-		GFF2273	0.72	-1.5
2,301,335	+		GFF2273	0.75	+0.3
2,301,335	+		GFF2273	0.75	-0.8
2,301,343	-		GFF2273	0.76	+0.9
2,301,345	+		GFF2273	0.76	+0.3
2,301,348	-		GFF2273	0.76	-0.2
2,301,353	-		GFF2273	0.77	-1.5
2,301,361	-		GFF2273	0.77	+1.2
2,301,375	-		GFF2273	0.78	-0.4
2,301,401	-		GFF2273	0.80	-2.5
2,301,472	+		GFF2273	0.86	+0.4
2,301,473	-		GFF2273	0.86	-0.9
2,301,513	+		GFF2273	0.89	+0.8
2,301,515	-		GFF2273	0.89	-0.5
2,301,562	+				+0.2
2,301,585	-				+0.4
2,301,594	+				-0.3
2,301,594	+				-1.9
2,301,601	+				+0.1
2,301,609	+				-1.9
2,301,617	-				+0.4
2,301,644	+				-0.3
2,301,658	+				-0.8
2,301,715	-				-0.6
2,301,745	+				-0.3
2,301,748	-				-0.4
2,301,749	-				-0.3
2,301,753	-				-2.0
2,301,753	-				+0.1
2,301,764	+				-1.9
2,301,772	-				-0.6
2,301,800	+				-0.3
2,301,815	+				-1.4
2,301,815	+				-1.3
2,301,815	+				-0.3
2,301,825	-				-0.0
2,301,850	+		GFF2274	0.17	+0.3
2,301,855	-		GFF2274	0.19	-0.6
2,301,858	-		GFF2274	0.19	-1.3
2,301,858	-		GFF2274	0.19	+0.4
2,301,858	-		GFF2274	0.19	+1.4
2,301,873	+		GFF2274	0.24	-1.5
2,301,873	+		GFF2274	0.24	-1.2
2,301,876	-		GFF2274	0.25	+0.5
2,301,878	+		GFF2274	0.25	+0.8
2,301,881	-		GFF2274	0.26	+1.0
2,301,886	-		GFF2274	0.28	-2.2
2,301,886	-		GFF2274	0.28	+0.6
2,301,901	+		GFF2274	0.32	-0.6
2,301,902	-		GFF2274	0.32	-1.3
2,301,902	-		GFF2274	0.32	+1.8
2,301,906	+		GFF2274	0.34	-1.3
2,301,909	-		GFF2274	0.35	+0.5
2,301,912	+		GFF2274	0.35	-2.5
2,301,914	-		GFF2274	0.36	-0.5
2,301,914	-		GFF2274	0.36	+1.5
2,301,962	+		GFF2274	0.50	+0.6
2,301,972	-		GFF2274	0.53	-0.2
2,301,972	-		GFF2274	0.53	-1.3
2,301,972	-		GFF2274	0.53	-1.0
2,301,982	-		GFF2274	0.56	-1.4
2,301,990	-		GFF2274	0.58	+0.6
2,301,994	+		GFF2274	0.60	+1.1
2,302,035	+		GFF2274	0.72	+0.1
2,302,042	+		GFF2274	0.74	+0.1
2,302,045	-		GFF2274	0.75	-0.0
2,302,074	+		GFF2274	0.83	-1.0
2,302,074	+		GFF2274	0.83	+0.8
2,302,074	+		GFF2274	0.83	-1.0
2,302,074	+		GFF2274	0.83	-2.6
2,302,074	+		GFF2274	0.83	+0.0
2,302,074	+		GFF2274	0.83	-0.1
2,302,074	+		GFF2274	0.83	-1.1
2,302,082	-		GFF2274	0.86	-0.3
2,302,082	-		GFF2274	0.86	-1.5
2,302,096	-		GFF2274	0.90	-1.6
2,302,099	+				-1.7
2,302,172	+				+0.6
2,302,206	+				-0.3
2,302,211	+				-0.3
2,302,211	+				-0.8
2,302,211	+				-0.8
2,302,219	-		GFF2275	0.10	+0.6
2,302,219	-		GFF2275	0.10	-2.3
2,302,219	-		GFF2275	0.10	-0.5
2,302,219	-		GFF2275	0.10	-2.1
2,302,238	+		GFF2275	0.13	+1.4
2,302,238	+		GFF2275	0.13	-0.8
2,302,238	+		GFF2275	0.13	-1.6
2,302,246	-		GFF2275	0.14	+0.5
2,302,259	+		GFF2275	0.15	-0.3
2,302,264	+		GFF2275	0.16	-0.2
2,302,264	+		GFF2275	0.16	+1.1
2,302,269	+		GFF2275	0.17	-0.9
2,302,269	+		GFF2275	0.17	-0.5
2,302,269	+		GFF2275	0.17	+0.0
2,302,269	+		GFF2275	0.17	-0.9
2,302,274	+		GFF2275	0.17	-0.6
2,302,277	-		GFF2275	0.18	+0.9
2,302,277	-		GFF2275	0.18	-0.2
2,302,277	-		GFF2275	0.18	-0.8
2,302,277	-		GFF2275	0.18	-0.1
2,302,281	+		GFF2275	0.18	+0.3
2,302,298	-		GFF2275	0.20	-0.4
2,302,321	-		GFF2275	0.23	-0.7
2,302,321	-		GFF2275	0.23	+0.9
2,302,325	+		GFF2275	0.23	-2.5
2,302,328	-		GFF2275	0.24	+0.3
2,302,335	+		GFF2275	0.25	-1.2
2,302,343	-		GFF2275	0.26	-0.4
2,302,350	-		GFF2275	0.26	-1.3
2,302,377	+		GFF2275	0.30	-0.0
2,302,381	+		GFF2275	0.30	+0.3
2,302,409	+		GFF2275	0.34	+0.0
2,302,414	+		GFF2275	0.34	+0.0
2,302,430	+		GFF2275	0.36	+0.1
2,302,435	+		GFF2275	0.37	-1.3
2,302,474	+		GFF2275	0.42	-1.6
2,302,486	-		GFF2275	0.43	-0.2
2,302,486	-		GFF2275	0.43	-0.1
2,302,491	-		GFF2275	0.44	+0.4
2,302,500	+		GFF2275	0.45	-0.7
2,302,506	+		GFF2275	0.46	+0.1
2,302,507	+		GFF2275	0.46	-0.7
2,302,508	-		GFF2275	0.46	+0.1
2,302,525	-		GFF2275	0.48	-0.6
2,302,525	-		GFF2275	0.48	-1.6
2,302,545	+		GFF2275	0.50	-1.3
2,302,556	+		GFF2275	0.52	-0.1
2,302,561	+		GFF2275	0.52	-0.0
2,302,576	+		GFF2275	0.54	+0.7
2,302,579	-		GFF2275	0.55	-2.1
2,302,581	-		GFF2275	0.55	+0.6
2,302,615	+		GFF2275	0.59	-0.5
2,302,630	-		GFF2275	0.61	-1.3
2,302,632	+		GFF2275	0.61	-2.5
2,302,632	+		GFF2275	0.61	-0.5
2,302,632	+		GFF2275	0.61	+0.6
2,302,632	+		GFF2275	0.61	-0.5
2,302,633	-		GFF2275	0.61	+0.2
2,302,635	-		GFF2275	0.61	+0.2
2,302,640	-		GFF2275	0.62	-2.1
2,302,640	-		GFF2275	0.62	+0.9