Strain Fitness in Sphingobium sp. HT1-2 around GFF2268

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,296,381	+		GFF2267	0.35	+0.2
2,296,414	+		GFF2267	0.38	-0.0
2,296,414	+		GFF2267	0.38	+0.5
2,296,420	+		GFF2267	0.38	+0.3
2,296,420	+		GFF2267	0.38	+0.2
2,296,424	-		GFF2267	0.38	-0.1
2,296,432	+		GFF2267	0.39	-0.3
2,296,437	+		GFF2267	0.39	-1.5
2,296,442	+		GFF2267	0.40	-1.3
2,296,445	-		GFF2267	0.40	-0.0
2,296,450	-		GFF2267	0.40	-0.8
2,296,463	+		GFF2267	0.41	+0.3
2,296,476	-		GFF2267	0.42	+0.4
2,296,487	+		GFF2267	0.43	-0.0
2,296,498	-		GFF2267	0.44	-0.9
2,296,503	-		GFF2267	0.44	-0.9
2,296,507	+		GFF2267	0.44	-0.1
2,296,526	-		GFF2267	0.45	+0.7
2,296,539	+		GFF2267	0.46	+0.3
2,296,539	+		GFF2267	0.46	+0.3
2,296,547	-		GFF2267	0.47	-2.9
2,296,547	-		GFF2267	0.47	-1.5
2,296,547	-		GFF2267	0.47	-1.9
2,296,552	-		GFF2267	0.47	-1.4
2,296,567	-		GFF2267	0.48	+0.7
2,296,572	-		GFF2267	0.49	+0.2
2,296,572	-		GFF2267	0.49	+0.3
2,296,616	+		GFF2267	0.52	-0.9
2,296,617	-		GFF2267	0.52	+0.3
2,296,624	-		GFF2267	0.52	-0.8
2,296,648	+		GFF2267	0.54	+0.3
2,296,675	+		GFF2267	0.56	-1.2
2,296,676	+		GFF2267	0.56	-0.1
2,296,676	+		GFF2267	0.56	+0.1
2,296,676	+		GFF2267	0.56	+0.2
2,296,683	-		GFF2267	0.56	+0.2
2,296,683	-		GFF2267	0.56	-0.3
2,296,684	-		GFF2267	0.56	-2.1
2,296,691	+		GFF2267	0.57	+1.0
2,296,694	-		GFF2267	0.57	-0.0
2,296,699	-		GFF2267	0.57	+0.7
2,296,725	-		GFF2267	0.59	+0.8
2,296,803	+		GFF2267	0.65	-0.4
2,296,808	+		GFF2267	0.65	-1.7
2,296,818	+		GFF2267	0.66	-2.0
2,296,834	-		GFF2267	0.67	-1.6
2,296,856	+		GFF2267	0.68	-0.6
2,296,859	+		GFF2267	0.68	-1.8
2,296,866	+		GFF2267	0.69	+0.4
2,296,871	+		GFF2267	0.69	+0.5
2,296,871	+		GFF2267	0.69	-1.4
2,296,871	+		GFF2267	0.69	-0.5
2,296,871	+		GFF2267	0.69	+0.4
2,296,874	-		GFF2267	0.69	-0.4
2,296,874	-		GFF2267	0.69	-0.0
2,296,874	-		GFF2267	0.69	-1.7
2,296,883	+		GFF2267	0.70	-0.1
2,296,883	+		GFF2267	0.70	+1.5
2,296,883	+		GFF2267	0.70	+0.6
2,296,888	+		GFF2267	0.70	-0.5
2,296,891	-		GFF2267	0.71	-1.1
2,296,891	-		GFF2267	0.71	-0.2
2,296,906	-		GFF2267	0.72	-1.9
2,296,908	+		GFF2267	0.72	-1.6
2,296,916	-		GFF2267	0.72	-0.1
2,296,916	-		GFF2267	0.72	-0.4
2,296,918	+		GFF2267	0.72	-2.4
2,296,927	-		GFF2267	0.73	-2.1
2,296,927	-		GFF2267	0.73	-0.3
2,296,934	+		GFF2267	0.74	+0.2
2,296,934	+		GFF2267	0.74	+0.2
2,296,934	+		GFF2267	0.74	-0.5
2,296,934	+		GFF2267	0.74	-0.1
2,296,942	-		GFF2267	0.74	-0.0
2,296,942	-		GFF2267	0.74	+0.0
2,296,942	-		GFF2267	0.74	-2.5
2,296,964	+		GFF2267	0.76	+0.3
2,296,984	+		GFF2267	0.77	+1.4
2,296,992	-		GFF2267	0.78	+0.0
2,297,073	+		GFF2267	0.83	+0.9
2,297,091	+		GFF2267	0.84	-0.1
2,297,110	+		GFF2267	0.86	-0.4
2,297,148	+		GFF2267	0.88	+0.4
2,297,153	+		GFF2267	0.89	-0.7
2,297,156	-		GFF2267	0.89	-0.8
2,297,189	+				+0.2
2,297,189	+				+0.4
2,297,189	+				+0.2
2,297,189	+				+0.4
2,297,189	+				-1.1
2,297,189	+				-1.8
2,297,189	+				+0.0
2,297,192	-				-0.6
2,297,196	-				-0.9
2,297,197	-				-0.8
2,297,197	-				+0.1
2,297,197	-				-1.6
2,297,201	+				-2.5
2,297,201	-				-1.3
2,297,240	-				-0.3
2,297,250	-				-0.1
2,297,276	+				+0.4
2,297,276	+				+0.3
2,297,323	+				-0.2
2,297,325	+				-0.0
2,297,420	-				-1.6
2,297,443	-		GFF2268	0.15	+1.2
2,297,452	+		GFF2268	0.17	-0.1
2,297,461	-		GFF2268	0.20	+0.7
2,297,468	+		GFF2268	0.21	+0.1
2,297,513	+		GFF2268	0.32	-1.7
2,297,513	+		GFF2268	0.32	-1.3
2,297,514	+		GFF2268	0.33	+0.5
2,297,521	-		GFF2268	0.34	+0.5
2,297,526	-		GFF2268	0.36	+2.2
2,297,545	+		GFF2268	0.40	-0.8
2,297,549	+		GFF2268	0.41	-0.2
2,297,552	-		GFF2268	0.42	-0.2
2,297,563	-		GFF2268	0.45	+0.5
2,297,566	+		GFF2268	0.45	-1.4
2,297,573	+		GFF2268	0.47	-0.4
2,297,573	+		GFF2268	0.47	+0.2
2,297,573	+		GFF2268	0.47	-0.8
2,297,575	-		GFF2268	0.48	-2.1
2,297,581	-		GFF2268	0.49	-1.2
2,297,581	-		GFF2268	0.49	-0.5
2,297,581	-		GFF2268	0.49	-0.7
2,297,583	+		GFF2268	0.50	-3.1
2,297,591	-		GFF2268	0.51	-0.8
2,297,591	-		GFF2268	0.51	+0.9
2,297,594	+		GFF2268	0.52	-2.2
2,297,594	+		GFF2268	0.52	+0.3
2,297,602	-		GFF2268	0.54	+1.4
2,297,643	-		GFF2268	0.64	+0.4
2,297,647	+		GFF2268	0.65	-2.3
2,297,658	-		GFF2268	0.68	-1.3
2,297,715	+		GFF2268	0.82	+0.2
2,297,752	-				-2.1
2,297,754	+				+0.2
2,297,759	+				-1.5
2,297,759	+				+0.0
2,297,759	+				-0.4
2,297,759	+				-2.2
2,297,759	+				-0.0
2,297,759	+				-1.3
2,297,759	+				-0.5
2,297,759	+				-1.2
2,297,759	+				-2.7
2,297,767	-				-0.0
2,297,767	-				+0.3
2,297,767	-				-3.4
2,297,767	-				-0.6
2,297,767	-				-2.1
2,297,767	-				+0.6
2,297,767	-				-1.4
2,297,767	-				-1.4
2,297,767	-				+0.1
2,297,767	-				-0.1
2,297,767	-				-0.1
2,297,767	-				-0.6
2,297,767	-				+0.7
2,297,767	-				+0.5
2,297,823	-				-2.1
2,297,823	-				-0.7
2,297,823	-				-1.3
2,297,875	-		GFF2269	0.14	-1.6
2,297,916	+		GFF2269	0.18	-0.5
2,297,924	-		GFF2269	0.19	-1.6
2,297,929	-		GFF2269	0.20	+0.0
2,297,939	-		GFF2269	0.21	-0.6
2,297,959	-		GFF2269	0.23	-1.5
2,297,959	-		GFF2269	0.23	-1.4
2,297,976	-		GFF2269	0.25	-1.6
2,298,077	-		GFF2269	0.36	-1.9
2,298,123	+		GFF2269	0.41	-1.4
2,298,146	-		GFF2269	0.44	+0.3
2,298,151	-		GFF2269	0.44	-1.7
2,298,151	-		GFF2269	0.44	-0.4
2,298,151	-		GFF2269	0.44	-0.9
2,298,213	+		GFF2269	0.51	-0.1
2,298,304	-		GFF2269	0.61	-1.6
2,298,316	+		GFF2269	0.62	-0.3
2,298,316	+		GFF2269	0.62	-1.3
2,298,316	+		GFF2269	0.62	-2.2
2,298,316	+		GFF2269	0.62	-2.1
2,298,316	+		GFF2269	0.62	-1.9
2,298,316	+		GFF2269	0.62	+1.8
2,298,319	-		GFF2269	0.63	-1.4
2,298,324	-		GFF2269	0.63	-1.4
2,298,324	-		GFF2269	0.63	-2.3
2,298,324	-		GFF2269	0.63	-1.1
2,298,324	-		GFF2269	0.63	-1.3
2,298,324	-		GFF2269	0.63	-1.5
2,298,324	-		GFF2269	0.63	-1.5
2,298,326	+		GFF2269	0.64	-1.6
2,298,326	+		GFF2269	0.64	-0.8
2,298,327	+		GFF2269	0.64	-0.9
2,298,334	-		GFF2269	0.64	-1.3
2,298,334	-		GFF2269	0.64	+0.2
2,298,334	-		GFF2269	0.64	+0.3
2,298,334	-		GFF2269	0.64	+1.2
2,298,343	+		GFF2269	0.65	-1.7
2,298,343	+		GFF2269	0.65	-1.7
2,298,351	-		GFF2269	0.66	+0.2
2,298,356	-		GFF2269	0.67	-1.1
2,298,375	-		GFF2269	0.69	-1.5
2,298,375	-		GFF2269	0.69	-0.4
2,298,375	-		GFF2269	0.69	+0.0
2,298,375	-		GFF2269	0.69	+0.5
2,298,377	+		GFF2269	0.69	-1.3
2,298,382	+		GFF2269	0.70	+0.3
2,298,385	-		GFF2269	0.70	+0.3
2,298,387	+		GFF2269	0.70	+0.5
2,298,390	-		GFF2269	0.71	-1.7
2,298,426	+		GFF2269	0.75	-0.2
2,298,434	+		GFF2269	0.75	+0.4
2,298,434	+		GFF2269	0.75	-1.5
2,298,434	-		GFF2269	0.75	-3.0
2,298,444	-		GFF2269	0.77	+0.1
2,298,471	+		GFF2269	0.80	+0.2
2,298,471	+		GFF2269	0.80	-2.3
2,298,532	+		GFF2269	0.86	-1.7
2,298,540	+		GFF2269	0.87	-1.6
2,298,540	+		GFF2269	0.87	-0.4
2,298,540	-		GFF2269	0.87	-1.6
2,298,540	-		GFF2269	0.87	-1.3
2,298,540	-		GFF2269	0.87	+0.4
2,298,545	+		GFF2269	0.88	-1.1
2,298,545	+		GFF2269	0.88	+1.3
2,298,553	-		GFF2269	0.89	+1.0
2,298,553	-		GFF2269	0.89	+0.7
2,298,586	+				-2.3
2,298,602	+				-1.4
2,298,610	-				-1.9
2,298,613	+				-0.4
2,298,613	+				-1.6
2,298,613	+				-0.5
2,298,621	-				-2.1
2,298,621	-				-1.0
2,298,636	+				+0.4
2,298,638	+				+1.5
2,298,643	+				+0.7
2,298,643	+				+0.3
2,298,643	+				+0.8
2,298,646	-				-0.1
2,298,651	-				-0.0
2,298,651	-				-0.5
2,298,688	-				-2.7
2,298,688	-				-2.3
2,298,718	+				-1.1
2,298,726	+				-1.9
2,298,726	+				-0.1
2,298,727	+				-2.8
2,298,734	-				-1.7
2,298,734	-				-1.4
2,298,734	-				-0.9
2,298,742	+				-0.5
2,298,755	-		GFF2270	0.11	+0.0
2,298,764	+		GFF2270	0.12	+0.1
2,298,764	+		GFF2270	0.12	-1.9