Strain Fitness in Sphingobium sp. HT1-2 around GFF2265

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,293,721	+		GFF2264	0.29	+1.2
2,293,738	+		GFF2264	0.30	-0.1
2,293,739	-		GFF2264	0.30	+0.0
2,293,744	+		GFF2264	0.31	-1.8
2,293,778	+		GFF2264	0.33	-0.1
2,293,798	-		GFF2264	0.35	-1.9
2,293,807	-		GFF2264	0.35	-2.6
2,293,807	-		GFF2264	0.35	+0.9
2,293,812	+		GFF2264	0.36	+0.3
2,293,812	+		GFF2264	0.36	+0.8
2,293,835	-		GFF2264	0.37	-1.6
2,293,838	-		GFF2264	0.37	-0.0
2,293,854	+		GFF2264	0.39	-0.3
2,293,854	+		GFF2264	0.39	-0.6
2,293,854	+		GFF2264	0.39	-1.0
2,293,854	+		GFF2264	0.39	-1.7
2,293,862	-		GFF2264	0.39	+0.5
2,293,862	-		GFF2264	0.39	-1.1
2,293,862	-		GFF2264	0.39	-1.1
2,293,862	-		GFF2264	0.39	-0.1
2,293,862	-		GFF2264	0.39	+0.2
2,293,862	-		GFF2264	0.39	-0.3
2,293,862	-		GFF2264	0.39	-0.1
2,293,862	-		GFF2264	0.39	-1.3
2,293,913	+		GFF2264	0.43	-0.7
2,293,968	+		GFF2264	0.47	-0.3
2,293,977	+		GFF2264	0.48	-0.4
2,293,991	-		GFF2264	0.49	-1.1
2,293,995	+		GFF2264	0.49	-0.9
2,294,016	-		GFF2264	0.50	+0.5
2,294,035	+		GFF2264	0.52	+0.5
2,294,064	+		GFF2264	0.54	-0.4
2,294,064	+		GFF2264	0.54	-0.3
2,294,069	+		GFF2264	0.54	-0.4
2,294,069	+		GFF2264	0.54	-1.0
2,294,082	-		GFF2264	0.55	-1.9
2,294,098	-		GFF2264	0.56	-0.1
2,294,125	-		GFF2264	0.58	-0.0
2,294,138	-		GFF2264	0.59	+0.6
2,294,140	+		GFF2264	0.59	-1.0
2,294,186	+		GFF2264	0.63	-0.2
2,294,281	+		GFF2264	0.69	-0.6
2,294,307	+		GFF2264	0.71	+0.3
2,294,315	-		GFF2264	0.72	+1.1
2,294,317	+		GFF2264	0.72	-0.6
2,294,317	+		GFF2264	0.72	-0.1
2,294,325	-		GFF2264	0.73	+1.0
2,294,325	-		GFF2264	0.73	-0.3
2,294,325	-		GFF2264	0.73	+0.3
2,294,327	+		GFF2264	0.73	+0.2
2,294,366	+		GFF2264	0.76	-0.6
2,294,383	+		GFF2264	0.77	-1.1
2,294,388	+		GFF2264	0.77	-0.4
2,294,393	+		GFF2264	0.78	-0.1
2,294,396	-		GFF2264	0.78	-0.3
2,294,401	-		GFF2264	0.78	+0.7
2,294,412	-		GFF2264	0.79	-0.1
2,294,414	+		GFF2264	0.79	-0.6
2,294,414	+		GFF2264	0.79	+0.8
2,294,422	-		GFF2264	0.80	-1.3
2,294,422	-		GFF2264	0.80	-2.0
2,294,422	-		GFF2264	0.80	-0.9
2,294,459	+		GFF2264	0.82	-0.4
2,294,480	+		GFF2264	0.84	-1.8
2,294,480	+		GFF2264	0.84	-0.2
2,294,480	+		GFF2264	0.84	-0.7
2,294,480	+		GFF2264	0.84	-0.3
2,294,480	+		GFF2264	0.84	-1.5
2,294,480	+		GFF2264	0.84	-0.1
2,294,480	+		GFF2264	0.84	+0.4
2,294,480	+		GFF2264	0.84	-0.9
2,294,480	+		GFF2264	0.84	-1.2
2,294,488	-		GFF2264	0.84	-1.3
2,294,488	-		GFF2264	0.84	+0.2
2,294,488	-		GFF2264	0.84	+0.1
2,294,488	-		GFF2264	0.84	-0.6
2,294,556	-		GFF2264	0.89	+0.2
2,294,569	+				-0.2
2,294,577	-				+0.3
2,294,601	+				-0.0
2,294,609	-				-0.5
2,294,645	-				-1.7
2,294,665	-				-1.0
2,294,691	-				+0.1
2,294,696	+				-0.7
2,294,696	+				-0.9
2,294,696	+				-0.5
2,294,701	+				+0.2
2,294,701	+				-0.3
2,294,704	-				-0.3
2,294,706	+				+0.3
2,294,738	-				+0.1
2,294,747	-				-0.2
2,294,761	+				+0.3
2,294,810	+		GFF2265	0.11	-2.1
2,294,818	-		GFF2265	0.12	+1.4
2,294,832	-		GFF2265	0.13	-0.1
2,294,925	+		GFF2265	0.24	-0.9
2,294,933	-		GFF2265	0.25	-2.3
2,294,959	-		GFF2265	0.28	-0.8
2,294,960	+		GFF2265	0.28	+0.3
2,294,960	+		GFF2265	0.28	+0.1
2,294,965	+		GFF2265	0.29	-1.5
2,294,970	+		GFF2265	0.30	+0.3
2,294,973	-		GFF2265	0.30	-1.6
2,294,973	-		GFF2265	0.30	-0.5
2,294,973	-		GFF2265	0.30	-3.1
2,294,973	-		GFF2265	0.30	+1.0
2,294,973	-		GFF2265	0.30	-1.4
2,294,973	-		GFF2265	0.30	-0.9
2,294,973	-		GFF2265	0.30	+0.6
2,294,973	-		GFF2265	0.30	-0.2
2,294,978	-		GFF2265	0.30	-0.6
2,294,978	-		GFF2265	0.30	+0.0
2,294,995	+		GFF2265	0.33	+0.1
2,295,023	+		GFF2265	0.36	-0.6
2,295,028	+		GFF2265	0.36	-2.2
2,295,030	+		GFF2265	0.37	-1.3
2,295,030	+		GFF2265	0.37	+0.5
2,295,030	+		GFF2265	0.37	-2.4
2,295,030	+		GFF2265	0.37	+0.2
2,295,030	+		GFF2265	0.37	+0.2
2,295,030	+		GFF2265	0.37	+0.3
2,295,031	-		GFF2265	0.37	-0.2
2,295,038	-		GFF2265	0.38	+0.1
2,295,038	-		GFF2265	0.38	-0.8
2,295,038	-		GFF2265	0.38	-1.3
2,295,068	-		GFF2265	0.41	+0.1
2,295,073	+		GFF2265	0.42	-1.0
2,295,081	-		GFF2265	0.43	-1.1
2,295,086	-		GFF2265	0.43	+0.7
2,295,122	+		GFF2265	0.48	-0.7
2,295,126	-		GFF2265	0.48	-0.2
2,295,126	-		GFF2265	0.48	-1.5
2,295,160	+		GFF2265	0.52	+0.2
2,295,185	+		GFF2265	0.55	-0.3
2,295,192	+		GFF2265	0.56	-0.1
2,295,192	+		GFF2265	0.56	-1.9
2,295,199	-		GFF2265	0.57	-1.5
2,295,241	+		GFF2265	0.62	-1.5
2,295,270	+		GFF2265	0.65	-0.1
2,295,273	-		GFF2265	0.65	-0.1
2,295,339	-		GFF2265	0.73	+0.6
2,295,344	-		GFF2265	0.74	-2.0
2,295,356	+		GFF2265	0.75	+0.4
2,295,374	+		GFF2265	0.77	-1.7
2,295,374	+		GFF2265	0.77	-3.1
2,295,391	-		GFF2265	0.79	-1.3
2,295,391	-		GFF2265	0.79	+0.1
2,295,428	+		GFF2265	0.84	+0.6
2,295,465	+		GFF2265	0.88	+0.3
2,295,475	-		GFF2265	0.89	+0.6
2,295,499	-				-1.6
2,295,507	+				-0.1
2,295,507	-				+1.0
2,295,546	+				+0.7
2,295,546	+				-2.1
2,295,546	+				-0.7
2,295,546	+				-0.8
2,295,546	+				-0.3
2,295,546	+				-0.1
2,295,546	+				+1.2
2,295,546	+				-1.1
2,295,546	+				+0.7
2,295,546	+				-0.3
2,295,552	-				-0.7
2,295,554	-				-2.4
2,295,554	-				+1.2
2,295,554	-				+1.5
2,295,554	-				-0.8
2,295,556	+				-1.0
2,295,556	+				-1.8
2,295,556	+				-0.7
2,295,556	+				+0.3
2,295,564	-				-1.8
2,295,571	+				-2.2
2,295,673	-		GFF2266	0.55	-0.8
2,295,692	-		GFF2266	0.64	-1.9
2,295,699	+		GFF2266	0.68	-0.4
2,295,699	+		GFF2266	0.68	-2.3
2,295,709	+		GFF2266	0.73	+0.3
2,295,709	+		GFF2266	0.73	-1.7
2,295,709	+		GFF2266	0.73	-0.1
2,295,709	+		GFF2266	0.73	-1.1
2,295,709	+		GFF2266	0.73	-0.9
2,295,717	-		GFF2266	0.77	+0.3
2,295,717	-		GFF2266	0.77	+0.6
2,295,717	-		GFF2266	0.77	+0.8
2,295,717	-		GFF2266	0.77	+0.8
2,295,717	-		GFF2266	0.77	+0.5
2,295,717	-		GFF2266	0.77	+1.5
2,295,758	+				+0.3
2,295,763	+				-2.5
2,295,766	+				+0.7
2,295,766	-				-0.1
2,295,766	-				-1.8
2,295,771	-				-1.4
2,295,771	-				-0.4
2,295,806	-				+0.4
2,295,818	-				-1.4
2,295,818	-				+0.4
2,295,818	-				-1.0
2,295,818	-				+0.4
2,295,849	+				-1.0
2,295,855	+				-0.5
2,295,883	+				-1.6
2,295,883	+				-1.4
2,295,886	-				-0.5
2,295,899	-				+0.3
2,295,903	+				-0.4
2,295,911	+				+0.9
2,295,911	-				+0.0
2,295,919	-				-0.4
2,295,919	-				-0.2
2,295,924	-				-2.0
2,295,930	+				-0.5
2,295,940	+				-0.2
2,295,940	+				+0.1
2,295,940	+				+1.3
2,295,940	+				-0.8
2,295,940	+				-3.1
2,295,948	-				-1.7
2,295,969	+				-0.7
2,296,030	+		GFF2267	0.11	-0.1
2,296,030	+		GFF2267	0.11	+0.5
2,296,030	+		GFF2267	0.11	-1.0
2,296,030	+		GFF2267	0.11	-2.5
2,296,038	-		GFF2267	0.12	+0.6
2,296,038	-		GFF2267	0.12	-0.2
2,296,038	-		GFF2267	0.12	+0.5
2,296,045	-		GFF2267	0.12	-0.8
2,296,045	-		GFF2267	0.12	-0.5
2,296,089	+		GFF2267	0.15	-0.2
2,296,100	+		GFF2267	0.16	-0.5
2,296,100	+		GFF2267	0.16	+0.9
2,296,100	+		GFF2267	0.16	+1.4
2,296,103	-		GFF2267	0.16	+0.5
2,296,108	-		GFF2267	0.17	-0.2
2,296,118	+		GFF2267	0.17	-1.3
2,296,118	+		GFF2267	0.17	+0.6
2,296,118	+		GFF2267	0.17	-1.2
2,296,126	-		GFF2267	0.18	+0.8
2,296,132	+		GFF2267	0.18	+0.4
2,296,132	+		GFF2267	0.18	-2.1
2,296,136	-		GFF2267	0.19	+0.5
2,296,140	-		GFF2267	0.19	-0.8
2,296,150	+		GFF2267	0.20	+1.1
2,296,150	+		GFF2267	0.20	+0.4
2,296,158	-		GFF2267	0.20	-0.1
2,296,158	-		GFF2267	0.20	-2.0
2,296,158	-		GFF2267	0.20	-0.3
2,296,158	-		GFF2267	0.20	-0.2
2,296,163	-		GFF2267	0.20	+2.1
2,296,178	-		GFF2267	0.21	+0.5
2,296,182	-		GFF2267	0.22	+0.2
2,296,183	-		GFF2267	0.22	-0.8
2,296,205	-		GFF2267	0.23	+0.5
2,296,205	-		GFF2267	0.23	+0.1
2,296,208	+		GFF2267	0.24	-0.2
2,296,208	+		GFF2267	0.24	-1.7
2,296,213	+		GFF2267	0.24	+0.2
2,296,213	+		GFF2267	0.24	-1.5
2,296,216	-		GFF2267	0.24	-1.5
2,296,221	-		GFF2267	0.24	-0.8
2,296,237	+		GFF2267	0.26	+0.4
2,296,240	-		GFF2267	0.26	+0.2
2,296,240	-		GFF2267	0.26	-1.1
2,296,240	-		GFF2267	0.26	-0.1
2,296,245	-		GFF2267	0.26	+0.7
2,296,245	-		GFF2267	0.26	-2.1
2,296,245	-		GFF2267	0.26	+0.4
2,296,255	+		GFF2267	0.27	+0.4
2,296,258	-		GFF2267	0.27	+1.8
2,296,280	+		GFF2267	0.29	-0.7
2,296,287	-		GFF2267	0.29	-0.9
2,296,338	-		GFF2267	0.33	-1.1
2,296,346	-		GFF2267	0.33	-0.9
2,296,369	+		GFF2267	0.35	-0.8
2,296,372	-		GFF2267	0.35	-2.1
2,296,372	-		GFF2267	0.35	-0.0
2,296,381	+		GFF2267	0.35	+0.2
2,296,414	+		GFF2267	0.38	-0.0
2,296,414	+		GFF2267	0.38	+0.5
2,296,420	+		GFF2267	0.38	+0.3
2,296,420	+		GFF2267	0.38	+0.2
2,296,424	-		GFF2267	0.38	-0.1
2,296,432	+		GFF2267	0.39	-0.3
2,296,437	+		GFF2267	0.39	-1.5
2,296,442	+		GFF2267	0.40	-1.3
2,296,445	-		GFF2267	0.40	-0.0
2,296,450	-		GFF2267	0.40	-0.8
2,296,463	+		GFF2267	0.41	+0.3
2,296,476	-		GFF2267	0.42	+0.4
2,296,487	+		GFF2267	0.43	-0.0
2,296,498	-		GFF2267	0.44	-0.9
2,296,503	-		GFF2267	0.44	-0.9
2,296,507	+		GFF2267	0.44	-0.1
2,296,526	-		GFF2267	0.45	+0.7
2,296,539	+		GFF2267	0.46	+0.3
2,296,539	+		GFF2267	0.46	+0.3
2,296,547	-		GFF2267	0.47	-2.9
2,296,547	-		GFF2267	0.47	-1.5
2,296,547	-		GFF2267	0.47	-1.9
2,296,552	-		GFF2267	0.47	-1.4