Strain Fitness in Sphingobium sp. HT1-2 around GFF2148

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,177,533	+				+0.5
2,177,533	+				+0.4
2,177,533	+				-0.9
2,177,533	+				+0.2
2,177,533	+				-0.0
2,177,533	+				+0.8
2,177,533	+				+0.8
2,177,533	+				+0.0
2,177,533	+				-0.1
2,177,533	+				-0.6
2,177,533	+				-2.1
2,177,541	-				-0.4
2,177,541	-				-1.7
2,177,541	-				-0.2
2,177,541	-				-1.2
2,177,541	-				+0.2
2,177,541	-				+0.8
2,177,541	-				-1.1
2,177,541	-				-0.4
2,177,541	-				+1.0
2,177,548	+				+0.1
2,177,551	-				+0.9
2,177,557	+				+0.9
2,177,596	+		GFF2147	0.12	-0.1
2,177,609	+		GFF2147	0.13	-2.4
2,177,619	+		GFF2147	0.14	-0.5
2,177,687	+		GFF2147	0.21	+0.1
2,177,699	+		GFF2147	0.22	-0.7
2,177,701	+		GFF2147	0.22	-0.1
2,177,707	-		GFF2147	0.22	+0.2
2,177,718	-		GFF2147	0.23	+0.9
2,177,725	+		GFF2147	0.24	-1.0
2,177,725	+		GFF2147	0.24	-0.8
2,177,725	+		GFF2147	0.24	+1.0
2,177,725	+		GFF2147	0.24	-0.4
2,177,725	+		GFF2147	0.24	+0.9
2,177,725	+		GFF2147	0.24	+0.3
2,177,725	+		GFF2147	0.24	-0.3
2,177,725	+		GFF2147	0.24	-0.7
2,177,733	-		GFF2147	0.25	+0.4
2,177,733	-		GFF2147	0.25	-0.1
2,177,733	-		GFF2147	0.25	+0.6
2,177,733	-		GFF2147	0.25	-0.1
2,177,733	-		GFF2147	0.25	-0.0
2,177,733	-		GFF2147	0.25	-0.8
2,177,733	-		GFF2147	0.25	-0.6
2,177,733	-		GFF2147	0.25	+0.9
2,177,733	-		GFF2147	0.25	-1.9
2,177,733	-		GFF2147	0.25	+1.0
2,177,733	-		GFF2147	0.25	+0.5
2,177,738	-		GFF2147	0.25	-1.4
2,177,743	-		GFF2147	0.26	+0.2
2,177,790	+		GFF2147	0.30	-1.4
2,177,790	+		GFF2147	0.30	-0.1
2,177,790	+		GFF2147	0.30	-0.2
2,177,790	+		GFF2147	0.30	-1.1
2,177,791	+		GFF2147	0.30	-2.0
2,177,798	-		GFF2147	0.31	+0.6
2,177,803	+		GFF2147	0.32	+0.1
2,177,811	-		GFF2147	0.32	-1.3
2,177,827	-		GFF2147	0.34	-1.0
2,177,827	-		GFF2147	0.34	-1.3
2,177,827	-		GFF2147	0.34	+0.6
2,177,837	-		GFF2147	0.35	-1.0
2,177,897	+		GFF2147	0.40	+0.0
2,177,897	+		GFF2147	0.40	+0.3
2,177,905	-		GFF2147	0.41	+0.9
2,177,912	+		GFF2147	0.42	+0.3
2,177,915	-		GFF2147	0.42	-0.6
2,177,920	-		GFF2147	0.43	+0.9
2,177,920	-		GFF2147	0.43	-0.6
2,177,921	-		GFF2147	0.43	+0.6
2,177,935	-		GFF2147	0.44	-1.8
2,177,949	+		GFF2147	0.45	+1.2
2,177,952	+		GFF2147	0.46	-0.3
2,177,955	-		GFF2147	0.46	-0.9
2,177,961	+		GFF2147	0.47	-1.5
2,178,011	+		GFF2147	0.51	+0.1
2,178,019	-		GFF2147	0.52	-1.0
2,178,020	+		GFF2147	0.52	-0.8
2,178,028	+		GFF2147	0.53	-0.1
2,178,028	+		GFF2147	0.53	-0.8
2,178,032	-		GFF2147	0.53	+1.6
2,178,042	-		GFF2147	0.54	-0.3
2,178,043	+		GFF2147	0.54	-1.2
2,178,043	+		GFF2147	0.54	+0.0
2,178,051	+		GFF2147	0.55	-0.8
2,178,052	-		GFF2147	0.55	+0.7
2,178,059	-		GFF2147	0.56	-2.1
2,178,066	-		GFF2147	0.57	+0.2
2,178,075	-		GFF2147	0.57	+0.8
2,178,075	-		GFF2147	0.57	-0.3
2,178,075	-		GFF2147	0.57	+0.7
2,178,082	+		GFF2147	0.58	+0.4
2,178,090	-		GFF2147	0.59	+0.9
2,178,094	+		GFF2147	0.59	-0.4
2,178,101	+		GFF2147	0.60	-0.2
2,178,184	+		GFF2147	0.68	+0.7
2,178,212	-		GFF2147	0.70	-0.4
2,178,219	+		GFF2147	0.71	-2.3
2,178,219	+		GFF2147	0.71	-0.4
2,178,219	+		GFF2147	0.71	-0.1
2,178,219	+		GFF2147	0.71	+0.7
2,178,219	+		GFF2147	0.71	-0.0
2,178,224	+		GFF2147	0.72	+0.9
2,178,227	-		GFF2147	0.72	-0.2
2,178,227	-		GFF2147	0.72	+0.4
2,178,262	+		GFF2147	0.75	+1.5
2,178,262	+		GFF2147	0.75	+0.9
2,178,270	-		GFF2147	0.76	-0.8
2,178,270	-		GFF2147	0.76	-1.1
2,178,270	-		GFF2147	0.76	+0.4
2,178,270	-		GFF2147	0.76	+0.3
2,178,270	-		GFF2147	0.76	+0.6
2,178,305	-		GFF2147	0.79	+1.6
2,178,328	-		GFF2147	0.81	+0.7
2,178,340	-		GFF2147	0.83	-0.7
2,178,397	-		GFF2147	0.88	-0.5
2,178,468	+				+1.0
2,178,473	+				-1.4
2,178,473	+				-0.2
2,178,481	-				-1.4
2,178,483	+				-0.0
2,178,486	-				+0.2
2,178,487	+				-2.1
2,178,532	-				-0.8
2,178,532	-				-0.6
2,178,542	-				-0.0
2,178,589	+				-0.5
2,178,632	-				-1.5
2,178,633	+				+0.7
2,178,634	+				+0.1
2,178,637	-				+0.2
2,178,637	-				-0.2
2,178,642	-				+0.5
2,178,692	+		GFF2148	0.13	-0.6
2,178,692	+		GFF2148	0.13	-1.4
2,178,692	+		GFF2148	0.13	-2.4
2,178,700	-		GFF2148	0.13	-2.1
2,178,700	-		GFF2148	0.13	+0.3
2,178,710	-		GFF2148	0.14	+0.1
2,178,729	-		GFF2148	0.15	-0.3
2,178,729	-		GFF2148	0.15	-0.5
2,178,752	+		GFF2148	0.17	-1.1
2,178,761	+		GFF2148	0.18	+1.4
2,178,769	-		GFF2148	0.19	-0.4
2,178,813	-		GFF2148	0.22	-1.5
2,178,824	-		GFF2148	0.23	+0.8
2,178,826	+		GFF2148	0.23	+1.2
2,178,842	+		GFF2148	0.24	-1.1
2,178,847	+		GFF2148	0.25	-0.1
2,178,850	-		GFF2148	0.25	-1.8
2,178,850	-		GFF2148	0.25	-0.4
2,178,852	-		GFF2148	0.25	-0.9
2,178,855	-		GFF2148	0.25	-0.7
2,178,882	+		GFF2148	0.27	+0.2
2,178,890	-		GFF2148	0.28	-0.3
2,178,939	-		GFF2148	0.32	+0.6
2,178,986	-		GFF2148	0.35	+1.3
2,178,987	-		GFF2148	0.35	+0.4
2,179,057	-		GFF2148	0.41	+0.4
2,179,068	+		GFF2148	0.42	+0.1
2,179,105	+		GFF2148	0.44	-1.5
2,179,105	+		GFF2148	0.44	+0.1
2,179,105	+		GFF2148	0.44	-2.2
2,179,105	+		GFF2148	0.44	+0.9
2,179,113	-		GFF2148	0.45	-1.1
2,179,139	-		GFF2148	0.47	-1.3
2,179,150	+		GFF2148	0.48	-0.3
2,179,172	+		GFF2148	0.50	+0.4
2,179,177	+		GFF2148	0.50	-2.2
2,179,177	+		GFF2148	0.50	+0.3
2,179,177	+		GFF2148	0.50	-1.1
2,179,179	-		GFF2148	0.50	+1.1
2,179,185	-		GFF2148	0.51	+0.4
2,179,199	+		GFF2148	0.52	-1.1
2,179,199	+		GFF2148	0.52	+0.3
2,179,206	-		GFF2148	0.52	-0.4
2,179,207	-		GFF2148	0.52	-2.1
2,179,212	-		GFF2148	0.53	-0.3
2,179,212	-		GFF2148	0.53	+0.4
2,179,212	-		GFF2148	0.53	+1.5
2,179,212	-		GFF2148	0.53	+0.3
2,179,212	-		GFF2148	0.53	+0.6
2,179,226	+		GFF2148	0.54	+0.7
2,179,227	-		GFF2148	0.54	-2.0
2,179,234	-		GFF2148	0.54	-1.0
2,179,295	+		GFF2148	0.59	-0.7
2,179,296	+		GFF2148	0.59	-0.9
2,179,329	+		GFF2148	0.62	-0.9
2,179,332	-		GFF2148	0.62	-1.4
2,179,396	+		GFF2148	0.67	+0.3
2,179,422	+		GFF2148	0.69	+1.3
2,179,432	+		GFF2148	0.70	-1.9
2,179,440	-		GFF2148	0.70	-0.3
2,179,482	-		GFF2148	0.74	-0.1
2,179,482	-		GFF2148	0.74	+1.2
2,179,482	-		GFF2148	0.74	-0.2
2,179,510	+		GFF2148	0.76	+0.8
2,179,522	+		GFF2148	0.77	-0.7
2,179,522	+		GFF2148	0.77	+0.4
2,179,522	+		GFF2148	0.77	+0.1
2,179,522	+		GFF2148	0.77	+0.5
2,179,527	+		GFF2148	0.77	-0.6
2,179,527	+		GFF2148	0.77	+0.2
2,179,530	+		GFF2148	0.77	-0.1
2,179,530	-		GFF2148	0.77	+1.7
2,179,530	-		GFF2148	0.77	-0.5
2,179,530	-		GFF2148	0.77	+0.5
2,179,530	-		GFF2148	0.77	+0.3
2,179,535	-		GFF2148	0.78	+0.8
2,179,535	-		GFF2148	0.78	+0.8
2,179,540	-		GFF2148	0.78	-0.5
2,179,544	+		GFF2148	0.78	+0.2
2,179,546	+		GFF2148	0.78	-1.5
2,179,605	+		GFF2148	0.83	-0.1
2,179,613	+		GFF2148	0.84	-1.7
2,179,618	+		GFF2148	0.84	+0.2
2,179,618	+		GFF2148	0.84	-0.5
2,179,623	+		GFF2148	0.84	-0.1
2,179,631	-		GFF2148	0.85	-1.6
2,179,631	-		GFF2148	0.85	+0.3
2,179,642	+		GFF2148	0.86	+0.3
2,179,652	+		GFF2148	0.87	-1.4
2,179,660	-		GFF2148	0.87	-0.9
2,179,660	-		GFF2148	0.87	+0.3
2,179,672	+		GFF2148	0.88	+1.4
2,179,673	-		GFF2148	0.88	+0.3
2,179,707	-				+0.0
2,179,708	+				+1.0
2,179,708	+				-1.0
2,179,750	-				-0.1
2,179,775	-				-2.1
2,179,789	+				-1.0
2,179,830	+				+0.2
2,179,836	-				-1.4
2,179,890	+				-1.3
2,179,890	+				-0.3
2,179,890	+				+0.9
2,179,898	-				-1.5
2,179,898	-				-0.7
2,179,898	-				-1.3
2,179,922	-				-1.0
2,179,939	+				-0.0
2,179,939	+				-0.7
2,179,939	+				-2.5
2,179,947	-				+0.4
2,179,947	-				-1.1