Strain Fitness in Sphingobium sp. HT1-2 around GFF2083

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,117,494	-		GFF2080	0.59	+0.4
2,117,495	-		GFF2080	0.60	+0.1
2,117,507	+		GFF2080	0.62	-0.8
2,117,508	-		GFF2080	0.62	-1.6
2,117,530	-		GFF2080	0.65	-2.0
2,117,530	-		GFF2080	0.65	+0.5
2,117,542	+		GFF2080	0.67	+0.4
2,117,542	-		GFF2080	0.67	-2.2
2,117,593	+		GFF2080	0.76	-0.8
2,117,654	+		GFF2080	0.86	-0.3
2,117,667	-		GFF2080	0.88	-2.0
2,117,690	+				+1.1
2,117,728	+				-0.1
2,117,741	-				+0.6
2,117,741	-				-1.1
2,117,756	-				+0.1
2,117,777	+				+0.2
2,117,780	-				-0.8
2,117,843	+		GFF2081	0.10	-0.6
2,117,851	-		GFF2081	0.12	-2.6
2,117,859	+		GFF2081	0.14	-0.5
2,117,882	-		GFF2081	0.21	-0.8
2,117,885	+		GFF2081	0.21	+0.2
2,117,885	+		GFF2081	0.21	-1.9
2,117,885	+		GFF2081	0.21	-0.5
2,117,885	+		GFF2081	0.21	-0.2
2,117,885	+		GFF2081	0.21	+0.3
2,117,885	+		GFF2081	0.21	+0.8
2,117,885	+		GFF2081	0.21	+0.5
2,117,885	+		GFF2081	0.21	-0.3
2,117,885	+		GFF2081	0.21	+0.2
2,117,885	+		GFF2081	0.21	-1.7
2,117,885	+		GFF2081	0.21	-0.3
2,117,885	+		GFF2081	0.21	+0.3
2,117,885	+		GFF2081	0.21	-1.0
2,117,885	+		GFF2081	0.21	-0.2
2,117,885	+		GFF2081	0.21	-1.4
2,117,885	+		GFF2081	0.21	-0.8
2,117,885	+		GFF2081	0.21	-1.8
2,117,885	+		GFF2081	0.21	-2.1
2,117,885	+		GFF2081	0.21	-0.0
2,117,885	+		GFF2081	0.21	+0.3
2,117,885	+		GFF2081	0.21	-0.2
2,117,885	+		GFF2081	0.21	+0.7
2,117,885	+		GFF2081	0.21	-1.6
2,117,893	-		GFF2081	0.23	-2.5
2,117,893	-		GFF2081	0.23	+0.2
2,117,893	-		GFF2081	0.23	-1.5
2,117,893	-		GFF2081	0.23	-0.7
2,117,893	-		GFF2081	0.23	-0.2
2,117,893	-		GFF2081	0.23	-2.8
2,117,893	-		GFF2081	0.23	-0.6
2,117,893	-		GFF2081	0.23	-1.5
2,117,893	-		GFF2081	0.23	-0.1
2,117,893	-		GFF2081	0.23	-1.1
2,117,893	-		GFF2081	0.23	-0.1
2,117,893	-		GFF2081	0.23	+0.0
2,117,893	-		GFF2081	0.23	-0.9
2,117,905	+		GFF2081	0.27	+0.6
2,117,915	+		GFF2081	0.29	+0.9
2,117,923	-		GFF2081	0.31	-0.0
2,117,923	-		GFF2081	0.31	-1.0
2,117,923	-		GFF2081	0.31	-0.7
2,117,923	-		GFF2081	0.31	-1.2
2,117,929	+		GFF2081	0.33	-0.7
2,117,955	-		GFF2081	0.40	+1.0
2,117,981	+		GFF2081	0.47	-0.5
2,117,981	+		GFF2081	0.47	-1.8
2,117,987	-		GFF2081	0.49	-0.3
2,118,038	+		GFF2081	0.62	-0.1
2,118,053	+		GFF2081	0.66	-0.6
2,118,053	+		GFF2081	0.66	+0.3
2,118,061	-		GFF2081	0.68	-0.6
2,118,070	-		GFF2081	0.71	-0.0
2,118,071	+		GFF2081	0.71	+0.3
2,118,071	+		GFF2081	0.71	-0.8
2,118,071	+		GFF2081	0.71	+0.1
2,118,071	+		GFF2081	0.71	-0.6
2,118,074	-		GFF2081	0.72	-0.7
2,118,076	+		GFF2081	0.72	-0.2
2,118,076	+		GFF2081	0.72	-0.9
2,118,076	+		GFF2081	0.72	+0.1
2,118,076	+		GFF2081	0.72	-0.5
2,118,076	+		GFF2081	0.72	+1.3
2,118,079	-		GFF2081	0.73	+0.1
2,118,079	-		GFF2081	0.73	+0.2
2,118,084	-		GFF2081	0.74	-1.2
2,118,084	-		GFF2081	0.74	+0.1
2,118,084	-		GFF2081	0.74	-0.1
2,118,090	-		GFF2081	0.76	-0.9
2,118,090	-		GFF2081	0.76	+1.1
2,118,092	+		GFF2081	0.77	+0.1
2,118,100	+		GFF2081	0.79	+1.2
2,118,100	+		GFF2081	0.79	+0.3
2,118,100	+		GFF2081	0.79	-0.2
2,118,100	+		GFF2081	0.79	-0.1
2,118,100	+		GFF2081	0.79	-1.1
2,118,105	+		GFF2081	0.80	+0.3
2,118,105	+		GFF2081	0.80	+0.0
2,118,105	+		GFF2081	0.80	+1.0
2,118,105	+		GFF2081	0.80	+0.4
2,118,105	+		GFF2081	0.80	-0.7
2,118,105	+		GFF2081	0.80	-1.3
2,118,108	-		GFF2081	0.81	-0.2
2,118,108	-		GFF2081	0.81	-0.4
2,118,110	-		GFF2081	0.81	-1.5
2,118,113	-		GFF2081	0.82	+1.2
2,118,113	-		GFF2081	0.82	-1.8
2,118,113	-		GFF2081	0.82	-2.0
2,118,113	-		GFF2081	0.82	-1.8
2,118,113	-		GFF2081	0.82	-0.3
2,118,113	-		GFF2081	0.82	-0.8
2,118,134	+		GFF2081	0.88	+0.6
2,118,134	+		GFF2081	0.88	-0.7
2,118,134	+		GFF2081	0.88	+0.6
2,118,134	+		GFF2081	0.88	+0.4
2,118,142	-				+0.9
2,118,142	-				-1.7
2,118,149	-				-1.4
2,118,149	-				-0.5
2,118,154	-				-0.3
2,118,154	-				-1.7
2,118,159	-				-0.9
2,118,166	-				-2.4
2,118,174	-				-1.0
2,118,181	-				-0.0
2,118,181	-				-1.3
2,118,190	+				+1.2
2,118,198	-				+0.9
2,118,203	-				+0.2
2,118,218	+		GFF2082	0.13	-1.2
2,118,224	-		GFF2082	0.15	-1.4
2,118,224	-		GFF2082	0.15	-1.3
2,118,239	+		GFF2082	0.19	+1.8
2,118,239	+		GFF2082	0.19	-0.4
2,118,239	+		GFF2082	0.19	+0.5
2,118,239	+		GFF2082	0.19	+0.2
2,118,239	+		GFF2082	0.19	-1.3
2,118,239	+		GFF2082	0.19	-1.3
2,118,239	+		GFF2082	0.19	+1.1
2,118,247	-		GFF2082	0.22	-1.7
2,118,247	-		GFF2082	0.22	-0.8
2,118,247	-		GFF2082	0.22	+1.1
2,118,247	-		GFF2082	0.22	+0.8
2,118,247	-		GFF2082	0.22	-2.0
2,118,247	-		GFF2082	0.22	-1.8
2,118,257	+		GFF2082	0.25	-1.6
2,118,268	+		GFF2082	0.28	+1.4
2,118,268	+		GFF2082	0.28	+0.5
2,118,276	-		GFF2082	0.31	-1.6
2,118,320	+		GFF2082	0.44	-0.2
2,118,345	+		GFF2082	0.52	-2.1
2,118,345	+		GFF2082	0.52	+0.4
2,118,345	+		GFF2082	0.52	+0.3
2,118,345	+		GFF2082	0.52	-0.5
2,118,353	-		GFF2082	0.55	-0.3
2,118,353	-		GFF2082	0.55	+0.4
2,118,353	-		GFF2082	0.55	-0.7
2,118,353	-		GFF2082	0.55	-1.3
2,118,353	-		GFF2082	0.55	+0.7
2,118,386	-		GFF2082	0.65	-0.6
2,118,407	+		GFF2082	0.71	-2.3
2,118,452	+		GFF2082	0.85	-1.3
2,118,495	+				-0.6
2,118,495	+				+0.2
2,118,510	+				+0.3
2,118,513	-				+0.1
2,118,518	-				-0.4
2,118,518	-				+1.1
2,118,531	+				-0.6
2,118,580	+		GFF2083	0.13	-2.1
2,118,611	+		GFF2083	0.18	-1.9
2,118,611	+		GFF2083	0.18	-0.0
2,118,619	-		GFF2083	0.19	-1.8
2,118,619	-		GFF2083	0.19	+0.6
2,118,626	+		GFF2083	0.20	+0.5
2,118,626	+		GFF2083	0.20	-0.2
2,118,634	-		GFF2083	0.22	+0.6
2,118,634	-		GFF2083	0.22	-1.4
2,118,634	-		GFF2083	0.22	-0.7
2,118,650	-		GFF2083	0.24	-0.1
2,118,650	-		GFF2083	0.24	-1.3
2,118,661	+		GFF2083	0.26	-2.2
2,118,669	-		GFF2083	0.27	+1.0
2,118,669	-		GFF2083	0.27	+0.0
2,118,707	-		GFF2083	0.33	-0.2
2,118,750	+		GFF2083	0.39	+0.9
2,118,755	+		GFF2083	0.40	+1.5
2,118,756	+		GFF2083	0.40	-1.5
2,118,756	+		GFF2083	0.40	-0.4
2,118,758	-		GFF2083	0.41	+1.0
2,118,758	-		GFF2083	0.41	+0.3
2,118,765	-		GFF2083	0.42	-0.8
2,118,782	+		GFF2083	0.44	-0.0
2,118,803	-		GFF2083	0.48	-0.9
2,118,903	+		GFF2083	0.63	+0.2
2,118,903	+		GFF2083	0.63	+0.7
2,118,903	+		GFF2083	0.63	+0.8
2,118,903	+		GFF2083	0.63	+1.7
2,118,903	+		GFF2083	0.63	-1.0
2,118,903	+		GFF2083	0.63	-0.0
2,118,903	+		GFF2083	0.63	+0.2
2,118,903	+		GFF2083	0.63	-0.3
2,118,911	-		GFF2083	0.64	+0.2
2,118,911	-		GFF2083	0.64	+0.1
2,118,911	-		GFF2083	0.64	+0.3
2,118,911	-		GFF2083	0.64	+0.8
2,118,911	-		GFF2083	0.64	+0.3
2,118,920	+		GFF2083	0.65	+0.0
2,118,928	-		GFF2083	0.67	+0.7
2,118,936	+		GFF2083	0.68	+1.4
2,118,936	+		GFF2083	0.68	-0.5
2,118,944	-		GFF2083	0.69	-1.4
2,118,944	-		GFF2083	0.69	+0.0
2,118,944	-		GFF2083	0.69	-0.5
2,118,944	-		GFF2083	0.69	-1.5
2,118,944	-		GFF2083	0.69	-0.8
2,118,946	-		GFF2083	0.69	+0.0
2,118,964	+		GFF2083	0.72	-0.3
2,119,003	+		GFF2083	0.78	+1.4
2,119,016	+		GFF2083	0.80	-2.1
2,119,024	-		GFF2083	0.81	+1.0
2,119,024	-		GFF2083	0.81	-2.1
2,119,076	+		GFF2083	0.89	-2.8
2,119,112	-				+0.7
2,119,252	+				+0.0
2,119,350	+		GFF2084	0.45	-1.3
2,119,419	+		GFF2084	0.76	+0.1
2,119,438	-		GFF2084	0.85	+0.5
2,119,457	-				+1.4
2,119,497	-				+0.8
2,119,497	-				-0.6
2,119,513	-				+0.6
2,119,566	+				+0.9
2,119,588	-				-0.6
2,119,589	-				-0.9
2,119,592	+				+0.4
2,119,594	-				-0.1
2,119,594	-				+0.2
2,119,594	-				+1.6
2,119,600	-				-0.1
2,119,639	+		GFF2085	0.16	+0.3
2,119,705	+		GFF2085	0.26	-0.2
2,119,715	-		GFF2085	0.27	-0.7
2,119,721	-		GFF2085	0.28	+0.4
2,119,770	+		GFF2085	0.36	+0.2
2,119,770	+		GFF2085	0.36	-0.4
2,119,770	+		GFF2085	0.36	+1.1
2,119,770	+		GFF2085	0.36	-0.8
2,119,770	+		GFF2085	0.36	+0.0
2,119,778	-		GFF2085	0.37	-0.5
2,119,778	-		GFF2085	0.37	+0.3
2,119,778	-		GFF2085	0.37	-0.2
2,119,778	-		GFF2085	0.37	+0.8
2,119,778	-		GFF2085	0.37	+0.3
2,119,778	-		GFF2085	0.37	-0.2
2,119,778	-		GFF2085	0.37	-0.7
2,119,778	-		GFF2085	0.37	+1.2
2,119,778	-		GFF2085	0.37	-0.5
2,119,780	+		GFF2085	0.37	-1.1
2,119,788	-		GFF2085	0.38	-0.4
2,119,825	-		GFF2085	0.44	+0.4
2,119,826	-		GFF2085	0.44	+0.1
2,119,869	-		GFF2085	0.51	-1.4
2,119,869	-		GFF2085	0.51	+2.0
2,119,890	+		GFF2085	0.54	-0.1
2,119,911	+		GFF2085	0.57	-1.8
2,119,921	+		GFF2085	0.58	+0.3
2,119,924	-		GFF2085	0.59	-0.0
2,119,924	-		GFF2085	0.59	+0.5
2,119,925	+		GFF2085	0.59	-0.4
2,119,927	+		GFF2085	0.59	+0.5
2,119,964	+		GFF2085	0.65	-1.5
2,119,993	+		GFF2085	0.69	-1.1
2,120,001	-		GFF2085	0.71	+0.6
2,120,009	-		GFF2085	0.72	+0.9
2,120,022	-		GFF2085	0.74	+1.3
2,120,022	-		GFF2085	0.74	-0.1
2,120,030	-		GFF2085	0.75	-1.9
2,120,061	-		GFF2085	0.80	-0.1
2,120,084	-		GFF2085	0.83	-0.6
2,120,085	-		GFF2085	0.83	-0.0
2,120,126	-		GFF2085	0.90	+1.2
2,120,145	+				-0.5