Strain Fitness in Sphingobium sp. HT1-2 around GFF2060

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,095,836	-		GFF2058	0.78	-0.1
2,095,887	-		GFF2058	0.86	-2.4
2,095,994	+				-2.4
2,095,999	+				-1.0
2,096,010	+				-1.3
2,096,027	+				+0.3
2,096,037	+		GFF2059	0.10	+0.8
2,096,037	+		GFF2059	0.10	+0.8
2,096,054	+		GFF2059	0.13	-1.3
2,096,072	-		GFF2059	0.16	+0.6
2,096,089	-		GFF2059	0.19	+0.3
2,096,105	+		GFF2059	0.21	-0.2
2,096,115	-		GFF2059	0.23	+1.1
2,096,132	-		GFF2059	0.26	-0.3
2,096,146	-		GFF2059	0.28	-0.9
2,096,160	+		GFF2059	0.31	-2.8
2,096,160	+		GFF2059	0.31	-0.1
2,096,166	+		GFF2059	0.32	+0.6
2,096,168	-		GFF2059	0.32	-1.6
2,096,168	-		GFF2059	0.32	-0.9
2,096,168	-		GFF2059	0.32	+0.8
2,096,168	-		GFF2059	0.32	-2.7
2,096,168	-		GFF2059	0.32	+0.1
2,096,168	-		GFF2059	0.32	-1.3
2,096,168	-		GFF2059	0.32	+1.2
2,096,169	-		GFF2059	0.32	-0.3
2,096,195	-		GFF2059	0.36	+0.6
2,096,200	-		GFF2059	0.37	-1.0
2,096,200	-		GFF2059	0.37	-0.4
2,096,258	-		GFF2059	0.47	-1.0
2,096,309	-		GFF2059	0.55	-1.4
2,096,340	+		GFF2059	0.60	-0.9
2,096,348	-		GFF2059	0.62	-0.6
2,096,389	+		GFF2059	0.68	-0.1
2,096,389	+		GFF2059	0.68	+0.7
2,096,389	+		GFF2059	0.68	-1.4
2,096,392	-		GFF2059	0.69	+1.3
2,096,394	+		GFF2059	0.69	+0.4
2,096,397	-		GFF2059	0.70	-1.0
2,096,397	-		GFF2059	0.70	-0.5
2,096,397	-		GFF2059	0.70	-0.7
2,096,397	-		GFF2059	0.70	-1.1
2,096,397	-		GFF2059	0.70	-1.6
2,096,397	-		GFF2059	0.70	-1.9
2,096,397	-		GFF2059	0.70	-0.5
2,096,397	-		GFF2059	0.70	+0.7
2,096,402	+		GFF2059	0.70	-0.1
2,096,424	-		GFF2059	0.74	+0.3
2,096,437	-		GFF2059	0.76	-0.4
2,096,446	+		GFF2059	0.78	+1.1
2,096,462	+		GFF2059	0.80	-1.5
2,096,462	+		GFF2059	0.80	-0.8
2,096,470	-		GFF2059	0.82	-1.5
2,096,488	+		GFF2059	0.85	+0.5
2,096,506	+		GFF2059	0.88	+0.8
2,096,520	-				-0.0
2,096,535	+				-2.3
2,096,538	-				-0.2
2,096,548	-				+1.3
2,096,548	-				-1.1
2,096,548	-				+0.3
2,096,571	-				-0.6
2,096,601	+				-1.6
2,096,619	-				-0.5
2,096,629	-				-2.2
2,096,634	-				+0.7
2,096,644	-				+1.4
2,096,644	-				-0.1
2,096,682	+				+1.2
2,096,690	-				-0.5
2,096,690	-				-0.5
2,096,690	-				-0.6
2,096,690	-				-0.9
2,096,703	-				-1.1
2,096,711	+				-1.9
2,096,718	+				+0.2
2,096,718	+				-0.7
2,096,718	+				+0.2
2,096,718	+				-0.1
2,096,718	+				-2.2
2,096,721	-				+0.3
2,096,723	+				+0.1
2,096,726	-				-0.5
2,096,726	-				+0.4
2,096,726	-				-0.1
2,096,741	-				+0.0
2,096,741	-				-0.8
2,096,771	-				+0.2
2,096,809	+				-0.1
2,096,819	+				-2.6
2,096,827	-				-2.2
2,096,844	+				-2.4
2,096,856	-				-1.9
2,096,862	-				-0.1
2,096,925	-				-1.3
2,096,932	+				-2.1
2,096,950	-				-1.6
2,096,983	+		GFF2060	0.10	-2.0
2,096,983	+		GFF2060	0.10	-1.2
2,096,996	+		GFF2060	0.11	-1.8
2,097,001	+		GFF2060	0.11	-1.8
2,097,002	+		GFF2060	0.11	-1.9
2,097,004	-		GFF2060	0.12	-3.3
2,097,004	-		GFF2060	0.12	-2.2
2,097,007	+		GFF2060	0.12	-3.1
2,097,015	-		GFF2060	0.12	-1.9
2,097,069	+		GFF2060	0.15	-2.3
2,097,072	-		GFF2060	0.16	+0.4
2,097,074	+		GFF2060	0.16	-2.3
2,097,074	+		GFF2060	0.16	-1.9
2,097,074	+		GFF2060	0.16	-2.0
2,097,074	+		GFF2060	0.16	-2.0
2,097,074	+		GFF2060	0.16	-0.8
2,097,082	-		GFF2060	0.16	-1.7
2,097,082	-		GFF2060	0.16	-1.5
2,097,082	-		GFF2060	0.16	-0.4
2,097,082	-		GFF2060	0.16	-2.1
2,097,082	-		GFF2060	0.16	-2.2
2,097,082	-		GFF2060	0.16	-0.9
2,097,082	-		GFF2060	0.16	-1.3
2,097,082	-		GFF2060	0.16	-1.9
2,097,093	-		GFF2060	0.17	-3.1
2,097,106	+		GFF2060	0.18	-0.4
2,097,114	+		GFF2060	0.18	-3.0
2,097,122	-		GFF2060	0.19	-2.9
2,097,122	-		GFF2060	0.19	-2.2
2,097,122	-		GFF2060	0.19	-1.1
2,097,122	-		GFF2060	0.19	-2.3
2,097,122	-		GFF2060	0.19	-2.1
2,097,154	+		GFF2060	0.20	-0.0
2,097,169	+		GFF2060	0.21	-2.9
2,097,169	+		GFF2060	0.21	-2.9
2,097,174	+		GFF2060	0.22	-2.1
2,097,174	+		GFF2060	0.22	-1.1
2,097,177	-		GFF2060	0.22	-0.3
2,097,177	-		GFF2060	0.22	-2.5
2,097,177	-		GFF2060	0.22	-3.0
2,097,177	-		GFF2060	0.22	-1.0
2,097,182	-		GFF2060	0.22	-1.6
2,097,186	+		GFF2060	0.22	-2.7
2,097,186	+		GFF2060	0.22	-2.6
2,097,194	+		GFF2060	0.23	-2.5
2,097,218	+		GFF2060	0.24	-2.9
2,097,226	-		GFF2060	0.25	-2.4
2,097,282	-		GFF2060	0.28	-2.3
2,097,308	+		GFF2060	0.30	-1.7
2,097,308	+		GFF2060	0.30	-2.5
2,097,321	-		GFF2060	0.30	-0.4
2,097,347	-		GFF2060	0.32	-2.9
2,097,373	+		GFF2060	0.34	-2.1
2,097,373	+		GFF2060	0.34	-0.9
2,097,377	+		GFF2060	0.34	-2.0
2,097,382	+		GFF2060	0.34	-1.4
2,097,390	-		GFF2060	0.35	-0.8
2,097,393	+		GFF2060	0.35	-2.3
2,097,395	+		GFF2060	0.35	-2.4
2,097,401	-		GFF2060	0.35	-2.0
2,097,405	+		GFF2060	0.35	-2.8
2,097,405	-		GFF2060	0.35	-1.4
2,097,440	-		GFF2060	0.38	-2.4
2,097,441	-		GFF2060	0.38	-1.3
2,097,473	+		GFF2060	0.40	-1.6
2,097,473	+		GFF2060	0.40	-0.9
2,097,473	+		GFF2060	0.40	-1.4
2,097,473	+		GFF2060	0.40	-1.5
2,097,473	+		GFF2060	0.40	-1.5
2,097,473	+		GFF2060	0.40	+0.6
2,097,473	+		GFF2060	0.40	-1.4
2,097,473	+		GFF2060	0.40	-2.3
2,097,478	+		GFF2060	0.40	-0.9
2,097,481	-		GFF2060	0.40	-0.9
2,097,481	-		GFF2060	0.40	-1.7
2,097,481	-		GFF2060	0.40	-1.7
2,097,481	-		GFF2060	0.40	-1.1
2,097,481	-		GFF2060	0.40	-1.3
2,097,486	-		GFF2060	0.40	-1.3
2,097,492	+		GFF2060	0.41	-2.7
2,097,500	-		GFF2060	0.41	+0.7
2,097,511	-		GFF2060	0.42	-1.6
2,097,518	-		GFF2060	0.42	-2.4
2,097,547	+		GFF2060	0.44	-2.0
2,097,547	+		GFF2060	0.44	-1.5
2,097,547	+		GFF2060	0.44	-1.6
2,097,547	+		GFF2060	0.44	-1.6
2,097,555	-		GFF2060	0.44	-1.5
2,097,555	-		GFF2060	0.44	-2.3
2,097,555	-		GFF2060	0.44	-2.7
2,097,555	-		GFF2060	0.44	-1.2
2,097,577	+		GFF2060	0.46	-1.6
2,097,577	+		GFF2060	0.46	+0.7
2,097,582	+		GFF2060	0.46	-1.8
2,097,590	-		GFF2060	0.47	-1.9
2,097,590	-		GFF2060	0.47	+0.9
2,097,610	+		GFF2060	0.48	-1.0
2,097,619	-		GFF2060	0.48	-0.9
2,097,679	+		GFF2060	0.52	-2.5
2,097,694	-		GFF2060	0.53	-2.1
2,097,706	+		GFF2060	0.53	-1.0
2,097,719	-		GFF2060	0.54	-0.3
2,097,734	+		GFF2060	0.55	-1.8
2,097,742	+		GFF2060	0.56	-1.6
2,097,742	+		GFF2060	0.56	-3.5
2,097,742	-		GFF2060	0.56	-1.6
2,097,743	-		GFF2060	0.56	-2.3
2,097,782	+		GFF2060	0.58	-2.0
2,097,785	-		GFF2060	0.58	-3.4
2,097,800	+		GFF2060	0.59	-1.8
2,097,812	+		GFF2060	0.60	-1.3
2,097,830	+		GFF2060	0.61	-0.5
2,097,873	+		GFF2060	0.63	-0.7
2,097,878	+		GFF2060	0.64	-2.4
2,097,878	+		GFF2060	0.64	-0.9
2,097,878	+		GFF2060	0.64	-2.5
2,097,878	+		GFF2060	0.64	-1.1
2,097,878	+		GFF2060	0.64	-3.0
2,097,878	+		GFF2060	0.64	-1.7
2,097,878	+		GFF2060	0.64	-2.5
2,097,878	+		GFF2060	0.64	-3.5
2,097,878	+		GFF2060	0.64	-2.4
2,097,878	+		GFF2060	0.64	-1.3
2,097,878	+		GFF2060	0.64	-2.1
2,097,886	-		GFF2060	0.64	-0.5
2,097,886	-		GFF2060	0.64	-0.6
2,097,886	-		GFF2060	0.64	-2.8
2,097,886	-		GFF2060	0.64	-2.9
2,097,886	-		GFF2060	0.64	-2.8
2,097,886	-		GFF2060	0.64	-0.6
2,097,886	-		GFF2060	0.64	-1.4
2,097,886	-		GFF2060	0.64	-1.8
2,097,889	+		GFF2060	0.64	-0.5
2,097,897	-		GFF2060	0.65	-3.3
2,097,915	+		GFF2060	0.66	-1.6
2,097,915	+		GFF2060	0.66	-2.0
2,097,915	+		GFF2060	0.66	-2.1
2,097,915	+		GFF2060	0.66	-2.7
2,097,915	+		GFF2060	0.66	-1.4
2,097,915	+		GFF2060	0.66	-2.9
2,097,915	+		GFF2060	0.66	-1.1
2,097,915	+		GFF2060	0.66	-1.4
2,097,915	+		GFF2060	0.66	-2.3
2,097,915	+		GFF2060	0.66	-3.1
2,097,915	+		GFF2060	0.66	+0.5
2,097,915	-		GFF2060	0.66	-0.0
2,097,923	-		GFF2060	0.66	-2.9
2,097,928	+		GFF2060	0.67	-1.6
2,097,936	+		GFF2060	0.67	-2.2
2,097,963	+		GFF2060	0.69	-2.9
2,097,967	-		GFF2060	0.69	-1.3
2,097,976	-		GFF2060	0.70	-2.0
2,097,993	-		GFF2060	0.71	-3.6
2,097,995	+		GFF2060	0.71	-0.6
2,097,995	+		GFF2060	0.71	+0.3
2,098,002	+		GFF2060	0.71	-1.0
2,098,003	+		GFF2060	0.71	-2.2
2,098,003	-		GFF2060	0.71	-2.9
2,098,003	-		GFF2060	0.71	-2.3
2,098,010	-		GFF2060	0.72	-2.1
2,098,013	+		GFF2060	0.72	-2.5
2,098,013	+		GFF2060	0.72	-1.8
2,098,021	-		GFF2060	0.72	-0.5
2,098,044	-		GFF2060	0.74	-2.8
2,098,052	+		GFF2060	0.74	-3.9
2,098,094	+		GFF2060	0.77	-1.5
2,098,105	+		GFF2060	0.77	-0.7
2,098,116	+		GFF2060	0.78	-3.5
2,098,141	+		GFF2060	0.79	-2.3
2,098,141	+		GFF2060	0.79	-3.0
2,098,147	-		GFF2060	0.80	-2.3
2,098,147	-		GFF2060	0.80	-1.7
2,098,149	-		GFF2060	0.80	-2.5
2,098,161	+		GFF2060	0.81	-1.5
2,098,174	-		GFF2060	0.81	-1.6
2,098,223	-		GFF2060	0.84	-0.9
2,098,236	+		GFF2060	0.85	-1.4
2,098,249	+		GFF2060	0.86	-1.9
2,098,251	-		GFF2060	0.86	-2.7
2,098,253	+		GFF2060	0.86	-0.6
2,098,253	+		GFF2060	0.86	-1.9
2,098,253	+		GFF2060	0.86	-1.3
2,098,263	+		GFF2060	0.87	-2.3
2,098,271	-		GFF2060	0.87	-1.9
2,098,286	+		GFF2060	0.88	-0.6
2,098,289	+		GFF2060	0.88	-3.8
2,098,296	+		GFF2060	0.89	-1.1
2,098,304	-		GFF2060	0.89	-3.2
2,098,304	-		GFF2060	0.89	-1.0
2,098,344	+				-1.8
2,098,365	+				-2.3
2,098,373	-				-1.4
2,098,393	-				-2.0
2,098,393	-				-2.2
2,098,395	+				-1.3
2,098,397	+				-1.6
2,098,403	-				-1.4
2,098,403	-				-1.6
2,098,405	-				-0.7
2,098,436	+				-2.1
2,098,436	+				-1.5
2,098,436	+				-0.4
2,098,436	+				-1.6
2,098,436	+				-1.8
2,098,436	+				-1.8
2,098,436	+				-2.6
2,098,436	+				-1.7
2,098,436	+				-2.6
2,098,436	+				-2.4
2,098,436	+				-0.7
2,098,436	+				-2.2
2,098,436	+				-1.9
2,098,436	+				-2.2
2,098,436	+				-0.4
2,098,436	+				-2.9
2,098,436	+				-2.3
2,098,436	+				-2.9
2,098,437	+				-2.0
2,098,444	-				+0.3
2,098,444	-				-2.1
2,098,444	-				-3.3
2,098,444	-				-0.4
2,098,444	-				-1.3
2,098,444	-				-2.7
2,098,444	-				-2.2
2,098,444	-				-0.1
2,098,444	-				-1.0
2,098,444	-				-2.1
2,098,444	-				-1.9
2,098,444	-				+0.2
2,098,444	-				-0.4
2,098,444	-				-2.8
2,098,444	-				-1.3
2,098,444	-				-0.7
2,098,444	-				-3.4
2,098,444	-				-2.0
2,098,444	-				-3.1
2,098,463	+				+0.1
2,098,471	-				-0.7
2,098,480	+				+1.9
2,098,481	-				+0.7
2,098,493	+				+0.6
2,098,493	+				+0.6
2,098,493	+				+1.2
2,098,493	+				-1.0
2,098,501	-				+0.8
2,098,503	+				+0.9
2,098,516	+				-0.6
2,098,516	+				+0.0
2,098,518	-				-2.0
2,098,537	+				-0.3
2,098,539	+				-0.2
2,098,549	-				-0.1
2,098,551	+				+0.7
2,098,556	+				+0.5
2,098,556	+				+0.0
2,098,556	+				+0.7
2,098,556	+				-0.3
2,098,562	+				+0.4
2,098,564	-				-0.8
2,098,570	-				-2.2
2,098,579	+				+1.1
2,098,604	+				-0.5
2,098,612	-				-0.7
2,098,612	-				-2.1
2,098,628	+				+0.4
2,098,628	+				+0.4
2,098,628	-				-1.2
2,098,633	+				-0.5
2,098,636	-				-1.4
2,098,638	+				-0.2
2,098,638	-				-0.0
2,098,638	-				-1.5
2,098,646	-				-1.8
2,098,689	+				-1.6
2,098,697	-				+0.9
2,098,727	-				+0.1
2,098,733	+				-2.1
2,098,736	-				+0.2
2,098,736	-				-1.5
2,098,747	-		GFF2061	0.10	+1.1
2,098,758	+		GFF2061	0.11	-2.5
2,098,764	-		GFF2061	0.12	-1.3
2,098,797	-		GFF2061	0.14	-0.3
2,098,819	+		GFF2061	0.16	-2.2
2,098,827	-		GFF2061	0.16	+0.5
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