Strain Fitness in Sphingobium sp. HT1-2 around GFF2059

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,094,975	+		GFF2057	0.75	-2.8
2,094,983	-		GFF2057	0.75	-2.3
2,094,991	+		GFF2057	0.76	-2.3
2,095,000	-		GFF2057	0.77	-0.5
2,095,057	+		GFF2057	0.83	-2.2
2,095,084	+		GFF2057	0.85	-1.7
2,095,091	+		GFF2057	0.86	-3.6
2,095,111	+		GFF2057	0.88	-2.4
2,095,114	-		GFF2057	0.88	-1.9
2,095,117	+		GFF2057	0.88	-1.3
2,095,117	+		GFF2057	0.88	-1.5
2,095,119	-		GFF2057	0.89	-1.9
2,095,128	+		GFF2057	0.90	-2.1
2,095,128	+		GFF2057	0.90	-1.9
2,095,136	-				-2.3
2,095,142	+				-2.5
2,095,143	+				-3.1
2,095,151	-				-3.6
2,095,167	+				-2.9
2,095,167	+				-3.1
2,095,175	-				-2.1
2,095,175	-				-2.4
2,095,177	-				-2.1
2,095,189	+				-1.8
2,095,190	-				-1.6
2,095,194	+				-2.1
2,095,221	-				-3.4
2,095,228	+				-0.7
2,095,236	-				-0.0
2,095,246	-				+0.7
2,095,306	-				-0.7
2,095,307	+				+0.6
2,095,307	+				-0.8
2,095,307	+				-0.1
2,095,307	+				-0.9
2,095,307	+				+0.1
2,095,307	+				-0.6
2,095,307	+				-1.4
2,095,315	-				+0.3
2,095,315	-				-0.3
2,095,315	-				+1.3
2,095,315	-				-0.1
2,095,315	-				-0.6
2,095,315	-				-3.0
2,095,322	+				+0.2
2,095,349	-				+0.3
2,095,359	+				-0.7
2,095,359	+				-0.3
2,095,367	-				-0.1
2,095,367	-				-0.3
2,095,367	-				+0.4
2,095,377	+				-0.1
2,095,377	+				-1.2
2,095,380	-				-0.1
2,095,399	+				-2.3
2,095,413	+		GFF2058	0.10	+0.9
2,095,421	-		GFF2058	0.11	+0.5
2,095,431	+		GFF2058	0.13	+0.0
2,095,457	+		GFF2058	0.17	-1.0
2,095,477	+		GFF2058	0.20	+0.2
2,095,477	-		GFF2058	0.20	+0.6
2,095,485	-		GFF2058	0.22	-0.4
2,095,493	+		GFF2058	0.23	+0.4
2,095,497	-		GFF2058	0.24	-0.8
2,095,501	-		GFF2058	0.24	+0.4
2,095,510	+		GFF2058	0.26	+0.6
2,095,511	-		GFF2058	0.26	-0.8
2,095,518	+		GFF2058	0.27	-0.3
2,095,518	+		GFF2058	0.27	+1.1
2,095,526	-		GFF2058	0.28	-0.3
2,095,535	+		GFF2058	0.30	-0.3
2,095,554	-		GFF2058	0.33	+0.1
2,095,554	-		GFF2058	0.33	-0.6
2,095,575	-		GFF2058	0.36	+0.8
2,095,577	+		GFF2058	0.37	-0.3
2,095,577	+		GFF2058	0.37	-0.2
2,095,577	+		GFF2058	0.37	-0.2
2,095,585	-		GFF2058	0.38	-1.1
2,095,590	-		GFF2058	0.39	-0.6
2,095,597	+		GFF2058	0.40	+0.2
2,095,604	-		GFF2058	0.41	+1.3
2,095,605	+		GFF2058	0.41	-0.5
2,095,615	-		GFF2058	0.43	-1.2
2,095,617	-		GFF2058	0.43	+0.1
2,095,631	+		GFF2058	0.45	+0.5
2,095,639	-		GFF2058	0.47	+0.5
2,095,663	-		GFF2058	0.50	-0.1
2,095,675	-		GFF2058	0.52	+1.0
2,095,705	-		GFF2058	0.57	+0.6
2,095,705	-		GFF2058	0.57	-0.6
2,095,719	-		GFF2058	0.59	-0.7
2,095,750	+		GFF2058	0.64	-1.7
2,095,765	-		GFF2058	0.67	-1.0
2,095,775	-		GFF2058	0.68	+1.4
2,095,784	-		GFF2058	0.70	-1.5
2,095,789	-		GFF2058	0.71	-0.1
2,095,809	-		GFF2058	0.74	-0.4
2,095,836	-		GFF2058	0.78	-0.1
2,095,887	-		GFF2058	0.86	-2.4
2,095,994	+				-2.4
2,095,999	+				-1.0
2,096,010	+				-1.3
2,096,027	+				+0.3
2,096,037	+		GFF2059	0.10	+0.8
2,096,037	+		GFF2059	0.10	+0.8
2,096,054	+		GFF2059	0.13	-1.3
2,096,072	-		GFF2059	0.16	+0.6
2,096,089	-		GFF2059	0.19	+0.3
2,096,105	+		GFF2059	0.21	-0.2
2,096,115	-		GFF2059	0.23	+1.1
2,096,132	-		GFF2059	0.26	-0.3
2,096,146	-		GFF2059	0.28	-0.9
2,096,160	+		GFF2059	0.31	-2.8
2,096,160	+		GFF2059	0.31	-0.1
2,096,166	+		GFF2059	0.32	+0.6
2,096,168	-		GFF2059	0.32	-1.6
2,096,168	-		GFF2059	0.32	-0.9
2,096,168	-		GFF2059	0.32	+0.8
2,096,168	-		GFF2059	0.32	-2.7
2,096,168	-		GFF2059	0.32	+0.1
2,096,168	-		GFF2059	0.32	-1.3
2,096,168	-		GFF2059	0.32	+1.2
2,096,169	-		GFF2059	0.32	-0.3
2,096,195	-		GFF2059	0.36	+0.6
2,096,200	-		GFF2059	0.37	-1.0
2,096,200	-		GFF2059	0.37	-0.4
2,096,258	-		GFF2059	0.47	-1.0
2,096,309	-		GFF2059	0.55	-1.4
2,096,340	+		GFF2059	0.60	-0.9
2,096,348	-		GFF2059	0.62	-0.6
2,096,389	+		GFF2059	0.68	-0.1
2,096,389	+		GFF2059	0.68	+0.7
2,096,389	+		GFF2059	0.68	-1.4
2,096,392	-		GFF2059	0.69	+1.3
2,096,394	+		GFF2059	0.69	+0.4
2,096,397	-		GFF2059	0.70	-1.0
2,096,397	-		GFF2059	0.70	-0.5
2,096,397	-		GFF2059	0.70	-0.7
2,096,397	-		GFF2059	0.70	-1.1
2,096,397	-		GFF2059	0.70	-1.6
2,096,397	-		GFF2059	0.70	-1.9
2,096,397	-		GFF2059	0.70	-0.5
2,096,397	-		GFF2059	0.70	+0.7
2,096,402	+		GFF2059	0.70	-0.1
2,096,424	-		GFF2059	0.74	+0.3
2,096,437	-		GFF2059	0.76	-0.4
2,096,446	+		GFF2059	0.78	+1.1
2,096,462	+		GFF2059	0.80	-1.5
2,096,462	+		GFF2059	0.80	-0.8
2,096,470	-		GFF2059	0.82	-1.5
2,096,488	+		GFF2059	0.85	+0.5
2,096,506	+		GFF2059	0.88	+0.8
2,096,520	-				-0.0
2,096,535	+				-2.3
2,096,538	-				-0.2
2,096,548	-				+1.3
2,096,548	-				-1.1
2,096,548	-				+0.3
2,096,571	-				-0.6
2,096,601	+				-1.6
2,096,619	-				-0.5
2,096,629	-				-2.2
2,096,634	-				+0.7
2,096,644	-				+1.4
2,096,644	-				-0.1
2,096,682	+				+1.2
2,096,690	-				-0.5
2,096,690	-				-0.5
2,096,690	-				-0.6
2,096,690	-				-0.9
2,096,703	-				-1.1
2,096,711	+				-1.9
2,096,718	+				+0.2
2,096,718	+				-0.7
2,096,718	+				+0.2
2,096,718	+				-0.1
2,096,718	+				-2.2
2,096,721	-				+0.3
2,096,723	+				+0.1
2,096,726	-				-0.5
2,096,726	-				+0.4
2,096,726	-				-0.1
2,096,741	-				+0.0
2,096,741	-				-0.8
2,096,771	-				+0.2
2,096,809	+				-0.1
2,096,819	+				-2.6
2,096,827	-				-2.2
2,096,844	+				-2.4
2,096,856	-				-1.9
2,096,862	-				-0.1
2,096,925	-				-1.3
2,096,932	+				-2.1
2,096,950	-				-1.6
2,096,983	+		GFF2060	0.10	-2.0
2,096,983	+		GFF2060	0.10	-1.2
2,096,996	+		GFF2060	0.11	-1.8
2,097,001	+		GFF2060	0.11	-1.8
2,097,002	+		GFF2060	0.11	-1.9
2,097,004	-		GFF2060	0.12	-3.3
2,097,004	-		GFF2060	0.12	-2.2
2,097,007	+		GFF2060	0.12	-3.1
2,097,015	-		GFF2060	0.12	-1.9
2,097,069	+		GFF2060	0.15	-2.3
2,097,072	-		GFF2060	0.16	+0.4
2,097,074	+		GFF2060	0.16	-2.3
2,097,074	+		GFF2060	0.16	-1.9
2,097,074	+		GFF2060	0.16	-2.0
2,097,074	+		GFF2060	0.16	-2.0
2,097,074	+		GFF2060	0.16	-0.8
2,097,082	-		GFF2060	0.16	-1.7
2,097,082	-		GFF2060	0.16	-1.5
2,097,082	-		GFF2060	0.16	-0.4
2,097,082	-		GFF2060	0.16	-2.1
2,097,082	-		GFF2060	0.16	-2.2
2,097,082	-		GFF2060	0.16	-0.9
2,097,082	-		GFF2060	0.16	-1.3
2,097,082	-		GFF2060	0.16	-1.9
2,097,093	-		GFF2060	0.17	-3.1
2,097,106	+		GFF2060	0.18	-0.4
2,097,114	+		GFF2060	0.18	-3.0
2,097,122	-		GFF2060	0.19	-2.9
2,097,122	-		GFF2060	0.19	-2.2
2,097,122	-		GFF2060	0.19	-1.1
2,097,122	-		GFF2060	0.19	-2.3
2,097,122	-		GFF2060	0.19	-2.1
2,097,154	+		GFF2060	0.20	-0.0
2,097,169	+		GFF2060	0.21	-2.9
2,097,169	+		GFF2060	0.21	-2.9
2,097,174	+		GFF2060	0.22	-2.1
2,097,174	+		GFF2060	0.22	-1.1
2,097,177	-		GFF2060	0.22	-0.3
2,097,177	-		GFF2060	0.22	-2.5
2,097,177	-		GFF2060	0.22	-3.0
2,097,177	-		GFF2060	0.22	-1.0
2,097,182	-		GFF2060	0.22	-1.6
2,097,186	+		GFF2060	0.22	-2.7
2,097,186	+		GFF2060	0.22	-2.6
2,097,194	+		GFF2060	0.23	-2.5
2,097,218	+		GFF2060	0.24	-2.9
2,097,226	-		GFF2060	0.25	-2.4
2,097,282	-		GFF2060	0.28	-2.3
2,097,308	+		GFF2060	0.30	-1.7
2,097,308	+		GFF2060	0.30	-2.5
2,097,321	-		GFF2060	0.30	-0.4
2,097,347	-		GFF2060	0.32	-2.9
2,097,373	+		GFF2060	0.34	-2.1
2,097,373	+		GFF2060	0.34	-0.9
2,097,377	+		GFF2060	0.34	-2.0
2,097,382	+		GFF2060	0.34	-1.4
2,097,390	-		GFF2060	0.35	-0.8
2,097,393	+		GFF2060	0.35	-2.3
2,097,395	+		GFF2060	0.35	-2.4
2,097,401	-		GFF2060	0.35	-2.0
2,097,405	+		GFF2060	0.35	-2.8
2,097,405	-		GFF2060	0.35	-1.4
2,097,440	-		GFF2060	0.38	-2.4
2,097,441	-		GFF2060	0.38	-1.3
2,097,473	+		GFF2060	0.40	-1.6
2,097,473	+		GFF2060	0.40	-0.9
2,097,473	+		GFF2060	0.40	-1.4
2,097,473	+		GFF2060	0.40	-1.5
2,097,473	+		GFF2060	0.40	-1.5
2,097,473	+		GFF2060	0.40	+0.6
2,097,473	+		GFF2060	0.40	-1.4
2,097,473	+		GFF2060	0.40	-2.3
2,097,478	+		GFF2060	0.40	-0.9
2,097,481	-		GFF2060	0.40	-0.9
2,097,481	-		GFF2060	0.40	-1.7
2,097,481	-		GFF2060	0.40	-1.7
2,097,481	-		GFF2060	0.40	-1.1
2,097,481	-		GFF2060	0.40	-1.3
2,097,486	-		GFF2060	0.40	-1.3
2,097,492	+		GFF2060	0.41	-2.7
2,097,500	-		GFF2060	0.41	+0.7
2,097,511	-		GFF2060	0.42	-1.6
2,097,518	-		GFF2060	0.42	-2.4
2,097,547	+		GFF2060	0.44	-2.0
2,097,547	+		GFF2060	0.44	-1.5
2,097,547	+		GFF2060	0.44	-1.6
2,097,547	+		GFF2060	0.44	-1.6
2,097,555	-		GFF2060	0.44	-1.5
2,097,555	-		GFF2060	0.44	-2.3
2,097,555	-		GFF2060	0.44	-2.7
2,097,555	-		GFF2060	0.44	-1.2
2,097,577	+		GFF2060	0.46	-1.6
2,097,577	+		GFF2060	0.46	+0.7