Strain Fitness in Sphingobium sp. HT1-2 around GFF2024

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,049,535	+		GFF2023	0.73	+0.3
2,049,537	+		GFF2023	0.73	-1.5
2,049,540	+		GFF2023	0.73	+1.0
2,049,540	+		GFF2023	0.73	-0.0
2,049,545	+		GFF2023	0.73	+0.1
2,049,627	+		GFF2023	0.76	-0.4
2,049,633	-		GFF2023	0.76	-0.0
2,049,641	+		GFF2023	0.76	-0.1
2,049,641	-		GFF2023	0.76	-2.2
2,049,642	+		GFF2023	0.76	+0.1
2,049,668	+		GFF2023	0.77	-0.1
2,049,673	+		GFF2023	0.77	-1.1
2,049,678	+		GFF2023	0.78	-1.8
2,049,678	+		GFF2023	0.78	+0.2
2,049,678	+		GFF2023	0.78	+0.3
2,049,678	+		GFF2023	0.78	-0.3
2,049,678	+		GFF2023	0.78	+0.6
2,049,686	-		GFF2023	0.78	-0.2
2,049,686	-		GFF2023	0.78	+1.6
2,049,686	-		GFF2023	0.78	+0.4
2,049,686	-		GFF2023	0.78	+0.7
2,049,691	+		GFF2023	0.78	-2.4
2,049,691	-		GFF2023	0.78	+0.2
2,049,699	-		GFF2023	0.78	-0.1
2,049,733	-		GFF2023	0.79	-0.2
2,049,734	+		GFF2023	0.79	-1.4
2,049,742	-		GFF2023	0.80	-1.2
2,049,743	-		GFF2023	0.80	+0.2
2,049,745	+		GFF2023	0.80	+0.6
2,049,753	-		GFF2023	0.80	-1.5
2,049,770	+		GFF2023	0.80	-2.2
2,049,775	+		GFF2023	0.81	+0.1
2,049,789	+		GFF2023	0.81	-0.6
2,049,797	-		GFF2023	0.81	-3.1
2,049,811	+		GFF2023	0.82	-1.3
2,049,843	+		GFF2023	0.83	-1.0
2,049,868	+		GFF2023	0.84	-0.5
2,049,868	+		GFF2023	0.84	-0.2
2,049,868	+		GFF2023	0.84	-1.7
2,049,868	+		GFF2023	0.84	-0.7
2,049,868	+		GFF2023	0.84	+0.4
2,049,868	+		GFF2023	0.84	+0.6
2,049,868	+		GFF2023	0.84	+0.6
2,049,876	+		GFF2023	0.84	-1.0
2,049,876	+		GFF2023	0.84	-0.5
2,049,876	+		GFF2023	0.84	-0.2
2,049,876	-		GFF2023	0.84	-0.3
2,049,882	+		GFF2023	0.84	-0.7
2,049,884	-		GFF2023	0.84	+0.9
2,049,884	-		GFF2023	0.84	-2.4
2,049,884	-		GFF2023	0.84	-0.2
2,049,884	-		GFF2023	0.84	+0.5
2,049,884	-		GFF2023	0.84	+1.3
2,049,900	+		GFF2023	0.85	-1.2
2,049,900	+		GFF2023	0.85	-2.0
2,049,952	-		GFF2023	0.86	+0.5
2,049,952	-		GFF2023	0.86	-1.3
2,049,954	+		GFF2023	0.86	-0.9
2,049,954	+		GFF2023	0.86	+1.1
2,049,954	+		GFF2023	0.86	+1.1
2,049,954	+		GFF2023	0.86	+0.3
2,049,957	-		GFF2023	0.86	+0.3
2,049,959	+		GFF2023	0.86	-1.9
2,049,959	+		GFF2023	0.86	+1.1
2,049,962	-		GFF2023	0.87	+0.2
2,049,985	-		GFF2023	0.87	+0.7
2,049,985	-		GFF2023	0.87	+0.3
2,049,989	+		GFF2023	0.87	-0.3
2,049,989	+		GFF2023	0.87	-0.2
2,049,989	+		GFF2023	0.87	-0.2
2,049,989	+		GFF2023	0.87	-0.3
2,049,997	-		GFF2023	0.88	-2.1
2,049,997	-		GFF2023	0.88	+0.1
2,049,997	-		GFF2023	0.88	+0.3
2,049,997	-		GFF2023	0.88	-2.1
2,049,997	-		GFF2023	0.88	+0.4
2,049,997	-		GFF2023	0.88	-2.2
2,050,000	+		GFF2023	0.88	+0.4
2,050,002	-		GFF2023	0.88	-0.7
2,050,006	-		GFF2023	0.88	+0.7
2,050,022	+		GFF2023	0.88	-2.2
2,050,033	+		GFF2023	0.89	-0.7
2,050,112	+				-0.9
2,050,140	+				+0.0
2,050,140	+				-0.4
2,050,196	-				+0.1
2,050,240	-				-1.1
2,050,269	+				-1.7
2,050,277	+				-1.5
2,050,277	-				-1.1
2,050,295	+				-1.2
2,050,300	+				-0.7
2,050,300	+				-1.8
2,050,300	+				+1.3
2,050,300	+				+1.3
2,050,300	+				-0.0
2,050,303	-				-0.4
2,050,308	-				-0.5
2,050,308	-				+0.6
2,050,308	-				-1.9
2,050,383	+				+0.5
2,050,410	-				+1.0
2,050,469	+				-2.2
2,050,546	+				-2.4
2,050,552	-				-1.7
2,050,554	-				-1.7
2,050,554	-				-0.7
2,050,579	+				+0.5
2,050,606	-				+0.5
2,050,677	+				-1.8
2,050,697	-				-1.2
2,050,721	+		GFF2024	0.10	-0.9
2,050,814	+		GFF2024	0.15	-1.2
2,050,817	+		GFF2024	0.15	+0.4
2,050,817	+		GFF2024	0.15	-0.2
2,050,825	-		GFF2024	0.15	+0.5
2,050,834	+		GFF2024	0.16	-1.5
2,050,834	+		GFF2024	0.16	+1.3
2,050,834	+		GFF2024	0.16	-1.1
2,050,842	-		GFF2024	0.16	+0.3
2,050,842	-		GFF2024	0.16	-0.4
2,050,858	+		GFF2024	0.17	-0.0
2,050,861	-		GFF2024	0.17	-0.1
2,050,882	-		GFF2024	0.18	+0.8
2,050,884	+		GFF2024	0.19	-2.0
2,050,892	-		GFF2024	0.19	-0.4
2,050,913	+		GFF2024	0.20	-1.7
2,050,913	+		GFF2024	0.20	+0.9
2,050,921	-		GFF2024	0.20	-1.6
2,050,946	+		GFF2024	0.22	-1.7
2,050,982	-		GFF2024	0.24	-1.5
2,051,006	+		GFF2024	0.25	-2.2
2,051,030	+		GFF2024	0.26	+1.3
2,051,043	-		GFF2024	0.27	-1.7
2,051,045	+		GFF2024	0.27	+0.9
2,051,045	-		GFF2024	0.27	-1.6
2,051,059	+		GFF2024	0.28	-3.0
2,051,062	-		GFF2024	0.28	-1.1
2,051,062	-		GFF2024	0.28	-1.1
2,051,062	-		GFF2024	0.28	+0.5
2,051,062	-		GFF2024	0.28	+0.1
2,051,062	-		GFF2024	0.28	-0.7
2,051,064	+		GFF2024	0.28	+0.5
2,051,067	-		GFF2024	0.28	-0.3
2,051,087	+		GFF2024	0.29	-0.3
2,051,094	+		GFF2024	0.29	-0.5
2,051,094	+		GFF2024	0.29	-1.0
2,051,137	+		GFF2024	0.32	-1.3
2,051,138	+		GFF2024	0.32	-0.2
2,051,146	-		GFF2024	0.32	+0.4
2,051,146	-		GFF2024	0.32	-3.0
2,051,148	+		GFF2024	0.32	-1.9
2,051,156	-		GFF2024	0.33	-0.5
2,051,201	-		GFF2024	0.35	-1.7
2,051,203	+		GFF2024	0.35	-1.5
2,051,209	-		GFF2024	0.35	-0.1
2,051,223	-		GFF2024	0.36	-0.1
2,051,244	+		GFF2024	0.37	+0.8
2,051,244	+		GFF2024	0.37	+0.3
2,051,244	+		GFF2024	0.37	+0.4
2,051,244	+		GFF2024	0.37	+0.5
2,051,244	+		GFF2024	0.37	-0.1
2,051,252	-		GFF2024	0.38	+0.9
2,051,252	-		GFF2024	0.38	-0.6
2,051,252	-		GFF2024	0.38	+1.0
2,051,252	-		GFF2024	0.38	-0.9
2,051,258	+		GFF2024	0.38	-2.4
2,051,288	-		GFF2024	0.40	+0.1
2,051,311	-		GFF2024	0.41	+0.9
2,051,321	+		GFF2024	0.41	+0.4
2,051,336	-		GFF2024	0.42	-0.3
2,051,343	-		GFF2024	0.42	+0.0
2,051,368	-		GFF2024	0.44	+0.3
2,051,369	+		GFF2024	0.44	-1.0
2,051,375	-		GFF2024	0.44	+0.3
2,051,385	-		GFF2024	0.45	+0.3
2,051,401	+		GFF2024	0.45	+0.6
2,051,401	+		GFF2024	0.45	-1.9
2,051,401	+		GFF2024	0.45	+0.0
2,051,401	+		GFF2024	0.45	+1.2
2,051,401	+		GFF2024	0.45	+0.4
2,051,404	-		GFF2024	0.46	-0.0
2,051,409	-		GFF2024	0.46	-1.5
2,051,409	-		GFF2024	0.46	-1.2
2,051,409	-		GFF2024	0.46	-0.2
2,051,409	-		GFF2024	0.46	+1.2
2,051,425	-		GFF2024	0.47	-0.1
2,051,428	-		GFF2024	0.47	-0.8
2,051,435	+		GFF2024	0.47	+0.2
2,051,438	-		GFF2024	0.47	+1.7
2,051,448	+		GFF2024	0.48	+0.3
2,051,461	-		GFF2024	0.49	-0.1
2,051,464	-		GFF2024	0.49	-0.7
2,051,493	+		GFF2024	0.50	-0.9
2,051,493	-		GFF2024	0.50	+0.0
2,051,493	-		GFF2024	0.50	+0.4
2,051,508	+		GFF2024	0.51	-0.8
2,051,516	-		GFF2024	0.51	-0.1
2,051,516	-		GFF2024	0.51	-0.0
2,051,518	+		GFF2024	0.52	-1.2
2,051,544	+		GFF2024	0.53	-0.6
2,051,593	+		GFF2024	0.55	+0.3
2,051,618	-		GFF2024	0.57	+0.7
2,051,620	+		GFF2024	0.57	-0.3
2,051,623	-		GFF2024	0.57	+0.0
2,051,623	-		GFF2024	0.57	-0.5
2,051,628	-		GFF2024	0.57	+0.2
2,051,632	-		GFF2024	0.57	+0.5
2,051,660	-		GFF2024	0.59	-1.0
2,051,660	-		GFF2024	0.59	-0.2
2,051,666	-		GFF2024	0.59	-0.2
2,051,696	-		GFF2024	0.61	+0.8
2,051,728	+		GFF2024	0.62	-2.2
2,051,762	+		GFF2024	0.64	+1.1
2,051,769	+		GFF2024	0.65	+0.0
2,051,769	+		GFF2024	0.65	+1.0
2,051,787	+		GFF2024	0.66	+0.2
2,051,809	-		GFF2024	0.67	-1.2
2,051,815	+		GFF2024	0.67	-0.3
2,051,858	+		GFF2024	0.69	-0.0
2,051,864	-		GFF2024	0.70	-0.7
2,051,874	+		GFF2024	0.70	-2.0
2,051,883	+		GFF2024	0.71	+0.3
2,051,888	+		GFF2024	0.71	-0.1
2,051,888	+		GFF2024	0.71	-0.4
2,051,888	+		GFF2024	0.71	+1.5
2,051,888	+		GFF2024	0.71	+1.1
2,051,888	+		GFF2024	0.71	+1.2
2,051,888	+		GFF2024	0.71	+1.2
2,051,888	+		GFF2024	0.71	-0.7
2,051,891	-		GFF2024	0.71	+1.3
2,051,891	-		GFF2024	0.71	+0.1
2,051,892	+		GFF2024	0.71	+0.3
2,051,893	+		GFF2024	0.71	+0.5
2,051,896	-		GFF2024	0.71	+0.9
2,051,896	-		GFF2024	0.71	+1.0
2,051,896	-		GFF2024	0.71	+0.6
2,051,896	-		GFF2024	0.71	-1.0
2,051,896	-		GFF2024	0.71	-0.9
2,051,896	-		GFF2024	0.71	-1.1
2,051,896	-		GFF2024	0.71	-0.5
2,051,896	-		GFF2024	0.71	-0.8
2,051,898	+		GFF2024	0.71	-0.0
2,051,914	+		GFF2024	0.72	+0.2
2,051,920	-		GFF2024	0.72	+0.2
2,051,922	+		GFF2024	0.73	-0.0
2,051,927	+		GFF2024	0.73	-1.8
2,051,927	+		GFF2024	0.73	-0.0
2,051,927	+		GFF2024	0.73	+0.8
2,051,927	+		GFF2024	0.73	-0.4
2,051,927	+		GFF2024	0.73	-0.4
2,051,927	+		GFF2024	0.73	+0.3
2,051,927	+		GFF2024	0.73	-0.3
2,051,927	+		GFF2024	0.73	-0.9
2,051,927	+		GFF2024	0.73	+0.7
2,051,935	-		GFF2024	0.73	+0.5
2,051,935	-		GFF2024	0.73	-1.0
2,051,935	-		GFF2024	0.73	-1.6
2,051,935	-		GFF2024	0.73	-0.0
2,052,017	+		GFF2024	0.78	-0.4
2,052,017	+		GFF2024	0.78	-1.7
2,052,017	+		GFF2024	0.78	+0.2
2,052,025	-		GFF2024	0.78	+0.5
2,052,025	-		GFF2024	0.78	-0.9
2,052,027	+		GFF2024	0.78	+0.9
2,052,027	+		GFF2024	0.78	-0.8
2,052,027	+		GFF2024	0.78	-0.8
2,052,035	-		GFF2024	0.78	+1.4
2,052,053	+		GFF2024	0.79	-0.4
2,052,053	+		GFF2024	0.79	-1.4
2,052,053	+		GFF2024	0.79	+0.4
2,052,064	+		GFF2024	0.80	+0.1
2,052,064	+		GFF2024	0.80	-0.4
2,052,099	-		GFF2024	0.82	+0.4
2,052,112	+		GFF2024	0.82	-0.4
2,052,120	-		GFF2024	0.83	-1.7
2,052,203	+		GFF2024	0.87	+1.8
2,052,211	-		GFF2024	0.88	-1.7
2,052,211	-		GFF2024	0.88	-0.7
2,052,254	+		GFF2024	0.90	-0.4
2,052,256	+				-2.0
2,052,262	+				+0.8
2,052,267	-				-0.8
2,052,270	-				+1.0
2,052,270	-				-0.8
2,052,270	-				-1.7
2,052,305	+				-1.4
2,052,309	-				-0.8
2,052,313	-				+0.4
2,052,313	-				-1.5
2,052,313	-				+0.2
2,052,314	-				-0.3
2,052,317	-				+0.5
2,052,324	+				-1.8
2,052,346	+				-0.6
2,052,359	+				-1.4
2,052,368	-				-0.9
2,052,375	+				-1.9
2,052,375	+				-0.0
2,052,386	+				-0.2
2,052,393	-				-0.4
2,052,410	+				-1.1
2,052,418	-				-1.1
2,052,418	-				-1.2
2,052,427	+				-0.9
2,052,435	+				+1.2
2,052,440	+				-1.6
2,052,461	-				-0.9
2,052,462	+				-0.7
2,052,462	+				+0.5
2,052,462	+				-0.2
2,052,470	-				+0.0
2,052,470	-				+0.8
2,052,470	-				+0.1
2,052,470	-				+1.1
2,052,532	+				+0.3
2,052,539	+				+1.3
2,052,585	+				-0.2
2,052,585	+				+1.8
2,052,585	+				+0.4
2,052,585	+				-2.3
2,052,585	+				+0.0
2,052,585	+				+0.8
2,052,593	-				-1.6
2,052,593	-				-0.3
2,052,593	-				-1.4
2,052,593	-				+0.9
2,052,593	-				+0.1
2,052,593	-				+0.5
2,052,593	-				+0.9
2,052,605	+				-0.3
2,052,613	-				+0.7
2,052,633	+				+1.0
2,052,633	+				+0.8
2,052,641	-				+0.7
2,052,643	+				+0.6
2,052,643	+				+0.3
2,052,643	+				-0.4
2,052,643	+				-0.8
2,052,644	+				-0.1
2,052,644	+				-0.8
2,052,644	+				+0.5
2,052,647	-				+1.4
2,052,651	-				-0.5
2,052,651	-				+0.3
2,052,652	-				+0.4
2,052,652	-				+0.0
2,052,652	-				-0.7
2,052,652	-				+0.4
2,052,656	-				-1.0
2,052,677	-				+0.5
2,052,677	-				-1.3
2,052,702	-				-0.4
2,052,704	+				+0.8
2,052,727	+				-0.5
2,052,742	-				+0.8
2,052,767	+				-0.6
2,052,780	-				-2.0
2,052,780	-				-1.2
2,052,785	-				-0.0
2,052,787	+				-1.1
2,052,790	-				+0.7
2,052,797	+				-0.8
2,052,812	-				-1.4
2,052,815	+				+1.8
2,052,819	-				-0.4
2,052,821	+				+1.5
2,052,821	+				-0.7
2,052,821	+				-0.1
2,052,821	+				-0.2
2,052,821	+				-0.0
2,052,821	+				+0.0
2,052,821	+				-1.2
2,052,821	+				+0.6
2,052,821	+				-0.6
2,052,821	+				+1.1
2,052,829	-				+1.1
2,052,829	-				-1.0
2,052,829	-				-0.5
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