Strain Fitness in Sphingobium sp. HT1-2 around GFF1981

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,002,907	+		GFF1979	0.80	-0.8
2,002,912	+		GFF1979	0.80	+0.5
2,002,912	-		GFF1979	0.80	-1.5
2,002,920	-		GFF1979	0.81	-2.0
2,002,920	-		GFF1979	0.81	+1.3
2,002,951	+		GFF1979	0.82	-2.5
2,002,953	-		GFF1979	0.83	-0.8
2,002,969	-		GFF1979	0.84	-0.6
2,002,971	+		GFF1979	0.84	-0.8
2,002,979	-		GFF1979	0.84	-0.9
2,002,985	+		GFF1979	0.85	-0.1
2,002,999	-		GFF1979	0.86	-0.4
2,003,005	-		GFF1979	0.86	-0.9
2,003,006	-		GFF1979	0.86	-0.7
2,003,015	+		GFF1979	0.87	+0.6
2,003,015	+		GFF1979	0.87	+0.2
2,003,015	+		GFF1979	0.87	-0.8
2,003,023	-		GFF1979	0.87	-0.2
2,003,026	+		GFF1979	0.87	-0.2
2,003,026	+		GFF1979	0.87	+0.5
2,003,030	+		GFF1979	0.88	-0.1
2,003,030	+		GFF1979	0.88	-1.6
2,003,031	+		GFF1979	0.88	-1.9
2,003,038	+		GFF1979	0.88	-2.7
2,003,038	-		GFF1979	0.88	+0.9
2,003,039	-		GFF1979	0.88	+0.8
2,003,046	-		GFF1979	0.89	-0.0
2,003,046	-		GFF1979	0.89	-1.6
2,003,049	+		GFF1979	0.89	-1.2
2,003,049	+		GFF1979	0.89	-0.2
2,003,073	-				-0.2
2,003,075	+				+0.5
2,003,082	+				-0.5
2,003,082	+				-0.6
2,003,083	-				+0.2
2,003,134	+				+0.9
2,003,135	-				-1.0
2,003,140	-				+0.1
2,003,160	-				-0.2
2,003,189	+				-0.2
2,003,210	-				-0.1
2,003,236	-				-1.0
2,003,242	+				-1.1
2,003,242	+				-0.1
2,003,243	+				-0.1
2,003,249	-				+0.5
2,003,250	-				-1.9
2,003,251	-				+0.6
2,003,261	-				-0.9
2,003,261	-				-0.0
2,003,279	+				+0.3
2,003,279	+				+1.0
2,003,279	+				-0.1
2,003,287	-				-0.5
2,003,306	-		GFF1980	0.10	-0.7
2,003,310	+		GFF1980	0.11	+0.3
2,003,345	+		GFF1980	0.16	-0.3
2,003,348	-		GFF1980	0.17	-0.8
2,003,359	+		GFF1980	0.18	-2.1
2,003,367	-		GFF1980	0.20	-1.0
2,003,367	-		GFF1980	0.20	-0.8
2,003,367	-		GFF1980	0.20	-0.5
2,003,367	-		GFF1980	0.20	-0.9
2,003,373	+		GFF1980	0.20	-0.4
2,003,374	+		GFF1980	0.21	-1.2
2,003,381	+		GFF1980	0.22	+0.4
2,003,381	+		GFF1980	0.22	+0.2
2,003,381	-		GFF1980	0.22	-0.4
2,003,389	+		GFF1980	0.23	+0.5
2,003,409	+		GFF1980	0.26	+1.0
2,003,415	-		GFF1980	0.27	-0.2
2,003,418	+		GFF1980	0.27	-0.4
2,003,423	+		GFF1980	0.28	+0.2
2,003,440	+		GFF1980	0.31	-0.8
2,003,454	+		GFF1980	0.33	+1.6
2,003,473	-		GFF1980	0.36	-0.6
2,003,497	-		GFF1980	0.39	+0.1
2,003,500	+		GFF1980	0.40	+0.0
2,003,500	+		GFF1980	0.40	-0.6
2,003,500	+		GFF1980	0.40	+0.7
2,003,500	+		GFF1980	0.40	+1.2
2,003,500	+		GFF1980	0.40	-0.6
2,003,504	+		GFF1980	0.41	-0.2
2,003,508	-		GFF1980	0.41	+0.3
2,003,508	-		GFF1980	0.41	+0.1
2,003,508	-		GFF1980	0.41	-1.5
2,003,508	-		GFF1980	0.41	-1.4
2,003,510	+		GFF1980	0.41	+0.3
2,003,510	+		GFF1980	0.41	-0.8
2,003,510	+		GFF1980	0.41	-0.0
2,003,512	-		GFF1980	0.42	-1.1
2,003,518	-		GFF1980	0.43	+1.8
2,003,518	-		GFF1980	0.43	-0.1
2,003,518	-		GFF1980	0.43	+0.8
2,003,518	-		GFF1980	0.43	-0.2
2,003,521	+		GFF1980	0.43	-0.4
2,003,529	-		GFF1980	0.44	+1.4
2,003,529	-		GFF1980	0.44	-0.2
2,003,566	+		GFF1980	0.50	-2.0
2,003,566	+		GFF1980	0.50	+1.0
2,003,566	+		GFF1980	0.50	+0.0
2,003,566	+		GFF1980	0.50	-0.4
2,003,566	+		GFF1980	0.50	-0.8
2,003,566	+		GFF1980	0.50	-1.2
2,003,566	+		GFF1980	0.50	-0.3
2,003,566	+		GFF1980	0.50	-0.1
2,003,574	-		GFF1980	0.51	+0.1
2,003,574	-		GFF1980	0.51	-0.7
2,003,574	-		GFF1980	0.51	+0.4
2,003,574	-		GFF1980	0.51	+0.2
2,003,584	-		GFF1980	0.53	-0.1
2,003,605	+		GFF1980	0.56	-0.5
2,003,605	+		GFF1980	0.56	+1.4
2,003,613	-		GFF1980	0.57	+1.0
2,003,613	-		GFF1980	0.57	+0.1
2,003,613	-		GFF1980	0.57	-0.2
2,003,615	+		GFF1980	0.57	+0.2
2,003,615	+		GFF1980	0.57	-0.3
2,003,628	+		GFF1980	0.59	-0.7
2,003,644	+		GFF1980	0.62	-1.1
2,003,644	+		GFF1980	0.62	+0.4
2,003,652	-		GFF1980	0.63	+0.2
2,003,652	-		GFF1980	0.63	+0.3
2,003,652	-		GFF1980	0.63	+0.6
2,003,662	-		GFF1980	0.65	+0.4
2,003,683	+		GFF1980	0.68	+0.8
2,003,690	+		GFF1980	0.69	-2.2
2,003,727	-		GFF1980	0.75	+0.6
2,003,727	-		GFF1980	0.75	-0.4
2,003,761	+		GFF1980	0.80	+0.8
2,003,778	+		GFF1980	0.82	+0.6
2,003,806	+		GFF1980	0.87	-2.6
2,003,814	-		GFF1980	0.88	-1.0
2,003,814	-		GFF1980	0.88	+1.1
2,003,814	-		GFF1980	0.88	-1.4
2,003,829	-				+0.3
2,003,835	+				+0.7
2,003,841	+				-1.4
2,003,842	+				+0.0
2,003,850	-				-0.7
2,003,850	-				-1.1
2,003,861	+				-0.2
2,003,861	+				-0.4
2,003,861	+				-0.2
2,003,869	-				+0.3
2,003,869	-				-1.8
2,003,869	-				+0.9
2,003,869	-				-0.5
2,003,869	-				+0.2
2,003,869	-				+1.1
2,003,882	-				-1.0
2,003,882	-				-0.1
2,003,893	+				-0.5
2,003,893	+				-1.1
2,003,901	-				-0.3
2,003,904	+				-1.7
2,003,919	+				+0.3
2,003,929	+				+0.3
2,003,932	-				+1.2
2,003,937	-				+1.1
2,003,937	-				-2.2
2,003,945	+				-0.0
2,003,946	-				-0.3
2,003,960	+				-0.0
2,003,968	-				+0.6
2,003,975	-				-0.2
2,003,980	-				-0.9
2,003,991	+				-1.4
2,004,001	+				+1.4
2,004,018	+				-0.3
2,004,027	-		GFF1981	0.10	+0.3
2,004,027	-		GFF1981	0.10	-0.1
2,004,042	+		GFF1981	0.11	-0.1
2,004,044	+		GFF1981	0.12	-0.0
2,004,047	+		GFF1981	0.12	-0.9
2,004,047	+		GFF1981	0.12	-2.2
2,004,047	+		GFF1981	0.12	-0.7
2,004,047	+		GFF1981	0.12	+0.2
2,004,047	+		GFF1981	0.12	-2.0
2,004,047	+		GFF1981	0.12	-0.8
2,004,047	+		GFF1981	0.12	-0.9
2,004,047	+		GFF1981	0.12	-0.4
2,004,047	+		GFF1981	0.12	-1.0
2,004,047	+		GFF1981	0.12	-1.2
2,004,047	+		GFF1981	0.12	+0.8
2,004,047	+		GFF1981	0.12	+0.0
2,004,047	+		GFF1981	0.12	+2.0
2,004,047	+		GFF1981	0.12	-1.5
2,004,047	+		GFF1981	0.12	+0.9
2,004,055	-		GFF1981	0.12	+0.3
2,004,055	-		GFF1981	0.12	-0.9
2,004,055	-		GFF1981	0.12	-0.4
2,004,055	-		GFF1981	0.12	+0.6
2,004,055	-		GFF1981	0.12	+0.4
2,004,055	-		GFF1981	0.12	-1.5
2,004,055	-		GFF1981	0.12	-1.2
2,004,055	-		GFF1981	0.12	-0.0
2,004,055	-		GFF1981	0.12	+0.0
2,004,055	-		GFF1981	0.12	+0.6
2,004,055	-		GFF1981	0.12	-0.7
2,004,055	-		GFF1981	0.12	+0.5
2,004,055	-		GFF1981	0.12	-1.9
2,004,055	-		GFF1981	0.12	+0.1
2,004,055	-		GFF1981	0.12	-1.5
2,004,055	-		GFF1981	0.12	-0.8
2,004,066	+		GFF1981	0.13	-2.4
2,004,074	-		GFF1981	0.14	-0.1
2,004,087	-		GFF1981	0.15	-0.7
2,004,113	-		GFF1981	0.17	+0.4
2,004,122	+		GFF1981	0.18	+0.1
2,004,132	-		GFF1981	0.18	+0.7
2,004,145	+		GFF1981	0.19	+0.2
2,004,156	+		GFF1981	0.20	+0.7
2,004,181	+		GFF1981	0.22	+0.5
2,004,181	+		GFF1981	0.22	+0.6
2,004,181	+		GFF1981	0.22	+0.5
2,004,181	+		GFF1981	0.22	-1.5
2,004,181	+		GFF1981	0.22	-0.4
2,004,181	+		GFF1981	0.22	+0.4
2,004,181	+		GFF1981	0.22	+0.7
2,004,181	+		GFF1981	0.22	-0.2
2,004,181	+		GFF1981	0.22	-0.4
2,004,189	-		GFF1981	0.23	-1.6
2,004,189	-		GFF1981	0.23	-0.3
2,004,189	-		GFF1981	0.23	-0.8
2,004,189	-		GFF1981	0.23	-1.0
2,004,189	-		GFF1981	0.23	-0.3
2,004,189	-		GFF1981	0.23	-0.8
2,004,189	-		GFF1981	0.23	-0.2
2,004,189	-		GFF1981	0.23	+0.4
2,004,189	-		GFF1981	0.23	-0.9
2,004,189	-		GFF1981	0.23	+0.1
2,004,196	+		GFF1981	0.23	+0.2
2,004,196	+		GFF1981	0.23	+0.0
2,004,196	+		GFF1981	0.23	+0.3
2,004,196	+		GFF1981	0.23	-2.5
2,004,201	+		GFF1981	0.24	-0.9
2,004,201	+		GFF1981	0.24	+2.7
2,004,201	+		GFF1981	0.24	-0.4
2,004,204	-		GFF1981	0.24	-0.8
2,004,209	-		GFF1981	0.24	+1.0
2,004,209	-		GFF1981	0.24	-0.9
2,004,209	-		GFF1981	0.24	+0.8
2,004,224	+		GFF1981	0.25	+0.9
2,004,224	+		GFF1981	0.25	-1.0
2,004,232	-		GFF1981	0.26	-2.7
2,004,232	-		GFF1981	0.26	+0.2
2,004,232	-		GFF1981	0.26	+0.6
2,004,232	-		GFF1981	0.26	-0.4
2,004,232	-		GFF1981	0.26	-1.7
2,004,232	-		GFF1981	0.26	-1.2
2,004,232	-		GFF1981	0.26	-0.3
2,004,232	-		GFF1981	0.26	+1.0
2,004,238	+		GFF1981	0.27	+0.5
2,004,238	+		GFF1981	0.27	-1.0
2,004,238	+		GFF1981	0.27	-1.2
2,004,238	+		GFF1981	0.27	+0.1
2,004,238	+		GFF1981	0.27	+1.2
2,004,246	-		GFF1981	0.27	-2.0
2,004,246	-		GFF1981	0.27	+0.6
2,004,246	-		GFF1981	0.27	+0.1
2,004,247	+		GFF1981	0.27	-0.9
2,004,255	-		GFF1981	0.28	+0.7
2,004,255	-		GFF1981	0.28	+0.6
2,004,255	-		GFF1981	0.28	-0.1
2,004,257	+		GFF1981	0.28	-2.7
2,004,257	+		GFF1981	0.28	+0.3
2,004,257	+		GFF1981	0.28	-0.3
2,004,257	+		GFF1981	0.28	-0.3
2,004,259	+		GFF1981	0.28	+0.2
2,004,260	-		GFF1981	0.28	-1.7
2,004,265	-		GFF1981	0.29	-0.1
2,004,267	+		GFF1981	0.29	+0.5
2,004,277	+		GFF1981	0.30	-1.2
2,004,278	+		GFF1981	0.30	-0.5
2,004,280	-		GFF1981	0.30	+0.1
2,004,283	+		GFF1981	0.30	+1.6
2,004,283	+		GFF1981	0.30	-1.6
2,004,283	+		GFF1981	0.30	-0.8
2,004,285	-		GFF1981	0.30	-1.0
2,004,285	-		GFF1981	0.30	-0.5
2,004,285	-		GFF1981	0.30	-0.9
2,004,285	-		GFF1981	0.30	-0.7
2,004,286	-		GFF1981	0.30	-0.8
2,004,291	-		GFF1981	0.31	+0.0
2,004,291	-		GFF1981	0.31	-0.2
2,004,291	-		GFF1981	0.31	+0.1
2,004,319	+		GFF1981	0.33	-0.6
2,004,325	-		GFF1981	0.33	-0.6
2,004,334	+		GFF1981	0.34	+0.6
2,004,397	+		GFF1981	0.39	-0.1
2,004,399	+		GFF1981	0.39	-1.1
2,004,399	+		GFF1981	0.39	-0.1
2,004,407	-		GFF1981	0.40	-0.1
2,004,407	-		GFF1981	0.40	-0.7
2,004,437	-		GFF1981	0.42	-0.0
2,004,447	-		GFF1981	0.43	+0.9
2,004,478	-		GFF1981	0.45	-0.0
2,004,495	+		GFF1981	0.46	+0.6
2,004,495	+		GFF1981	0.46	-1.1
2,004,500	+		GFF1981	0.47	-0.3
2,004,508	-		GFF1981	0.47	-0.8
2,004,563	+		GFF1981	0.52	-0.7
2,004,619	+		GFF1981	0.56	+0.6
2,004,639	+		GFF1981	0.57	-0.7
2,004,653	+		GFF1981	0.59	+0.4
2,004,669	-		GFF1981	0.60	-0.2
2,004,684	+		GFF1981	0.61	-0.8
2,004,727	+		GFF1981	0.64	-1.4
2,004,727	+		GFF1981	0.64	+0.4
2,004,735	-		GFF1981	0.65	+0.4
2,004,747	-		GFF1981	0.66	-0.0
2,004,750	+		GFF1981	0.66	-0.3
2,004,754	+		GFF1981	0.66	+0.3
2,004,754	+		GFF1981	0.66	+0.3
2,004,773	-		GFF1981	0.68	+0.9
2,004,805	+		GFF1981	0.70	-2.6
2,004,805	+		GFF1981	0.70	+0.9
2,004,805	+		GFF1981	0.70	-1.0
2,004,813	-		GFF1981	0.71	-1.0
2,004,834	+		GFF1981	0.73	-1.1
2,004,835	-		GFF1981	0.73	-1.2
2,004,835	-		GFF1981	0.73	-0.7
2,004,914	+		GFF1981	0.79	+0.5
2,004,916	-		GFF1981	0.79	-1.2
2,004,928	-		GFF1981	0.80	-1.2
2,004,936	+		GFF1981	0.80	-0.4
2,004,936	+		GFF1981	0.80	-0.6
2,004,936	-		GFF1981	0.80	+1.2
2,004,944	-		GFF1981	0.81	-0.4
2,004,959	-		GFF1981	0.82	+1.3
2,004,963	+		GFF1981	0.82	+0.3
2,004,969	+		GFF1981	0.83	-1.5
2,005,000	+		GFF1981	0.85	-0.5
2,005,000	+		GFF1981	0.85	+0.5
2,005,008	-		GFF1981	0.86	+0.6
2,005,008	-		GFF1981	0.86	+0.4
2,005,008	-		GFF1981	0.86	-0.0
2,005,017	-		GFF1981	0.87	-0.4
2,005,036	-		GFF1981	0.88	-0.0
2,005,043	+		GFF1981	0.89	-0.8
2,005,043	+		GFF1981	0.89	-0.6
2,005,043	+		GFF1981	0.89	-0.0
2,005,043	+		GFF1981	0.89	-0.1
2,005,043	+		GFF1981	0.89	-2.4
2,005,051	-		GFF1981	0.89	-0.7
2,005,051	-		GFF1981	0.89	+1.8
2,005,102	-				-0.3
2,005,103	+				-1.0
2,005,148	-				+0.4
2,005,162	+				+0.6
2,005,162	+				-2.5
2,005,162	+				+1.1
2,005,162	+				-1.7
2,005,170	-				-0.5
2,005,200	+				-0.7
2,005,201	+				+0.6
2,005,201	+				-0.2
2,005,201	+				-0.1
2,005,201	+				-3.0
2,005,201	+				+0.3
2,005,201	+				+0.1
2,005,204	-				+0.1
2,005,209	-				+0.9
2,005,209	-				-0.8
2,005,209	-				-0.4
2,005,209	-				-2.2
2,005,209	-				+0.3
2,005,209	-				+0.2
2,005,209	-				-1.9
2,005,211	+				+0.3
2,005,211	+				+0.2
2,005,211	+				+0.6
2,005,219	-				-0.8
2,005,221	+				-0.0
2,005,221	+				-0.4
2,005,221	+				+0.5
2,005,227	-				-2.5
2,005,229	-				-0.4
2,005,229	-				+0.2
2,005,233	+				-0.2
2,005,243	-				-0.7
2,005,245	-				-1.4
2,005,245	-				+0.2
2,005,267	+				-0.1
2,005,275	-				-0.3
2,005,282	-				+0.7
2,005,284	+				+0.3
2,005,284	+				-0.2
2,005,284	+				+0.4
2,005,295	+				+0.6
2,005,295	+				-1.9
2,005,303	-				-0.9
2,005,303	-				-0.6
2,005,303	-				+0.6
2,005,303	-				+0.0
2,005,303	-				+0.3
2,005,305	+				+1.0
2,005,313	-				-0.4
2,005,313	-				-1.1
2,005,314	-				+1.3
2,005,360	+		GFF1982	0.11	-0.3
2,005,360	+		GFF1982	0.11	-1.0
2,005,360	+		GFF1982	0.11	+0.2
2,005,363	-		GFF1982	0.11	-0.2
2,005,368	-		GFF1982	0.12	+0.3
2,005,368	-		GFF1982	0.12	+2.0
2,005,383	+		GFF1982	0.13	+2.2
2,005,388	+		GFF1982	0.14	+0.1
2,005,416	+		GFF1982	0.16	+0.5
2,005,424	-		GFF1982	0.17	-0.5
2,005,430	+		GFF1982	0.18	+1.0
2,005,430	+		GFF1982	0.18	-1.1
2,005,430	-		GFF1982	0.18	-0.6
2,005,458	+		GFF1982	0.21	+0.1
2,005,475	+		GFF1982	0.22	-2.4
2,005,539	+		GFF1982	0.29	+1.7
2,005,549	-		GFF1982	0.30	-0.6
2,005,558	-		GFF1982	0.31	-0.7
2,005,570	-		GFF1982	0.32	-0.2
2,005,576	+		GFF1982	0.32	+1.7
2,005,577	+		GFF1982	0.33	+1.6
2,005,581	+		GFF1982	0.33	+0.5
2,005,585	-		GFF1982	0.33	+1.6
2,005,585	-		GFF1982	0.33	+0.3
2,005,589	-		GFF1982	0.34	-0.3
2,005,628	+		GFF1982	0.38	-0.4
2,005,647	-		GFF1982	0.40	+1.1
2,005,648	-		GFF1982	0.40	-1.3
2,005,656	+		GFF1982	0.40	-1.2
2,005,707	+		GFF1982	0.46	-0.3
2,005,726	+		GFF1982	0.47	-0.0
2,005,726	-		GFF1982	0.47	-2.1
2,005,734	-		GFF1982	0.48	+1.1
2,005,741	-		GFF1982	0.49	+0.2
2,005,768	+		GFF1982	0.52	-0.2
2,005,771	-		GFF1982	0.52	-0.1
2,005,829	-		GFF1982	0.58	-0.2
2,005,861	-		GFF1982	0.61	+0.8
2,005,865	-		GFF1982	0.61	-0.4
2,005,866	-		GFF1982	0.61	-1.7
2,005,867	+		GFF1982	0.62	-1.6
2,005,869	+		GFF1982	0.62	-0.5
2,005,926	+		GFF1982	0.67	-1.1
2,005,964	-		GFF1982	0.71	+0.5
2,005,966	+		GFF1982	0.71	-0.1
2,005,974	-		GFF1982	0.72	+0.2
2,005,982	+		GFF1982	0.73	-1.4
2,005,987	-		GFF1982	0.74	-0.1
2,006,019	-		GFF1982	0.77	-0.4
2,006,168	-				+0.6
2,006,180	+				-0.3
2,006,188	-				+0.4