Strain Fitness in Sphingobium sp. HT1-2 around GFF1965

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,988,854	-				-0.5
1,988,909	-		GFF1963	0.18	+0.1
1,988,916	-		GFF1963	0.20	+1.1
1,988,961	-		GFF1963	0.30	+0.1
1,989,028	-		GFF1963	0.44	-1.0
1,989,296	-				+0.5
1,989,306	-				+1.2
1,989,314	-				+0.4
1,989,567	-				+0.5
1,989,582	-				+0.5
1,989,615	+				-1.2
1,989,623	-				+1.2
1,989,623	-				-1.2
1,989,648	+		GFF1965	0.12	-0.4
1,989,661	-		GFF1965	0.14	+2.1
1,989,682	+		GFF1965	0.18	+0.2
1,989,695	-		GFF1965	0.20	+1.0
1,989,723	+		GFF1965	0.25	-2.9
1,989,730	-		GFF1965	0.26	-1.6
1,989,744	-		GFF1965	0.28	-0.6
1,989,753	+		GFF1965	0.30	+0.1
1,989,753	+		GFF1965	0.30	-0.6
1,989,781	-		GFF1965	0.35	-0.1
1,989,787	+		GFF1965	0.36	-1.8
1,989,791	-		GFF1965	0.36	-1.1
1,989,801	-		GFF1965	0.38	-0.2
1,989,806	+		GFF1965	0.39	-2.6
1,989,811	+		GFF1965	0.40	-1.2
1,989,814	-		GFF1965	0.40	+1.1
1,989,819	-		GFF1965	0.41	-1.3
1,989,825	-		GFF1965	0.42	-0.2
1,989,825	-		GFF1965	0.42	+1.2
1,989,825	-		GFF1965	0.42	+0.6
1,989,827	+		GFF1965	0.42	-0.7
1,989,827	+		GFF1965	0.42	-0.1
1,989,833	-		GFF1965	0.43	-1.9
1,989,835	-		GFF1965	0.44	-0.5
1,989,854	+		GFF1965	0.47	-0.0
1,989,894	+		GFF1965	0.54	+1.4
1,989,919	-		GFF1965	0.58	-0.9
1,989,934	+		GFF1965	0.60	-1.1
1,989,993	-		GFF1965	0.70	+0.2
1,990,012	-		GFF1965	0.73	-0.1
1,990,021	+		GFF1965	0.75	-1.2
1,990,021	+		GFF1965	0.75	-1.7
1,990,021	+		GFF1965	0.75	+0.6
1,990,021	+		GFF1965	0.75	-0.9
1,990,029	-		GFF1965	0.76	-0.9
1,990,029	-		GFF1965	0.76	+0.2
1,990,029	-		GFF1965	0.76	-0.1
1,990,029	-		GFF1965	0.76	+0.5
1,990,029	-		GFF1965	0.76	-1.0
1,990,029	-		GFF1965	0.76	-0.9
1,990,029	-		GFF1965	0.76	-2.7
1,990,029	-		GFF1965	0.76	+1.1
1,990,044	-		GFF1965	0.79	-1.2
1,990,044	-		GFF1965	0.79	+0.5
1,990,058	+		GFF1965	0.81	-0.6
1,990,058	+		GFF1965	0.81	+0.2
1,990,058	+		GFF1965	0.81	-2.6
1,990,061	-		GFF1965	0.82	+0.2
1,990,061	-		GFF1965	0.82	-1.6
1,990,066	-		GFF1965	0.82	+0.1
1,990,066	-		GFF1965	0.82	-0.3
1,990,109	+		GFF1965	0.90	+0.7
1,990,119	+				-1.1
1,990,159	+				-0.0
1,990,159	+				+0.6
1,990,177	+				-2.1
1,990,177	+				+1.0
1,990,188	+				+1.0
1,990,196	-				-0.1
1,990,237	+				-0.3
1,990,237	+				-1.2
1,990,237	+				-0.2
1,990,237	+				-0.5
1,990,237	+				-1.0
1,990,237	+				+0.2
1,990,237	+				-0.6
1,990,245	-		GFF1966	0.10	+0.1
1,990,245	-		GFF1966	0.10	-1.7
1,990,253	+		GFF1966	0.11	-2.2
1,990,256	-		GFF1966	0.11	-1.7
1,990,265	-		GFF1966	0.13	-1.3
1,990,265	-		GFF1966	0.13	+0.5
1,990,265	-		GFF1966	0.13	-1.4
1,990,265	-		GFF1966	0.13	-1.2
1,990,265	-		GFF1966	0.13	-0.3
1,990,287	+		GFF1966	0.15	-1.4
1,990,287	-		GFF1966	0.15	+1.1
1,990,292	+		GFF1966	0.16	-0.4
1,990,295	-		GFF1966	0.16	+0.9
1,990,295	-		GFF1966	0.16	+0.8
1,990,322	-		GFF1966	0.20	-0.9
1,990,358	+		GFF1966	0.25	-0.8
1,990,361	-		GFF1966	0.25	+1.2
1,990,366	-		GFF1966	0.26	-1.2
1,990,366	-		GFF1966	0.26	-0.6
1,990,368	+		GFF1966	0.26	+0.1
1,990,376	-		GFF1966	0.27	+1.6
1,990,376	-		GFF1966	0.27	+0.1
1,990,388	-		GFF1966	0.28	+0.3
1,990,398	+		GFF1966	0.30	-0.2
1,990,398	+		GFF1966	0.30	-1.8
1,990,398	+		GFF1966	0.30	+1.9
1,990,409	+		GFF1966	0.31	-0.3
1,990,409	+		GFF1966	0.31	+0.1
1,990,410	+		GFF1966	0.31	-1.5
1,990,439	-		GFF1966	0.35	-0.2
1,990,444	-		GFF1966	0.36	+0.2
1,990,444	-		GFF1966	0.36	+0.1
1,990,463	+		GFF1966	0.38	-1.9
1,990,463	+		GFF1966	0.38	-1.8
1,990,463	+		GFF1966	0.38	+0.1
1,990,463	+		GFF1966	0.38	+0.5
1,990,463	+		GFF1966	0.38	+0.1
1,990,463	+		GFF1966	0.38	+0.1
1,990,471	-		GFF1966	0.39	-0.4
1,990,471	-		GFF1966	0.39	+0.5
1,990,471	-		GFF1966	0.39	-1.9
1,990,471	-		GFF1966	0.39	+0.1
1,990,476	+		GFF1966	0.40	+0.6
1,990,476	-		GFF1966	0.40	-2.4
1,990,484	-		GFF1966	0.41	-0.6
1,990,508	-		GFF1966	0.44	-1.4
1,990,508	-		GFF1966	0.44	+0.2
1,990,508	-		GFF1966	0.44	-0.8
1,990,513	-		GFF1966	0.44	+0.1
1,990,526	+		GFF1966	0.46	+1.2
1,990,526	+		GFF1966	0.46	+0.5
1,990,526	+		GFF1966	0.46	+0.0
1,990,526	+		GFF1966	0.46	-0.7
1,990,534	-		GFF1966	0.47	-0.2
1,990,534	-		GFF1966	0.47	-0.5
1,990,534	-		GFF1966	0.47	-1.4
1,990,547	-		GFF1966	0.49	-0.7
1,990,550	+		GFF1966	0.49	+0.1
1,990,558	-		GFF1966	0.50	-1.2
1,990,566	-		GFF1966	0.51	-0.0
1,990,581	+		GFF1966	0.53	-1.9
1,990,583	+		GFF1966	0.53	-0.8
1,990,591	-		GFF1966	0.54	-0.7
1,990,645	+		GFF1966	0.61	-0.4
1,990,659	+		GFF1966	0.63	+1.2
1,990,659	+		GFF1966	0.63	-2.2
1,990,662	-		GFF1966	0.63	+1.4
1,990,662	-		GFF1966	0.63	-0.9
1,990,665	+		GFF1966	0.64	+0.7
1,990,675	+		GFF1966	0.65	-0.7
1,990,688	-		GFF1966	0.67	+1.6
1,990,689	-		GFF1966	0.67	+0.5
1,990,719	-		GFF1966	0.71	+1.3
1,990,719	-		GFF1966	0.71	-0.5
1,990,732	+		GFF1966	0.72	-0.2
1,990,739	+		GFF1966	0.73	-0.6
1,990,773	+		GFF1966	0.78	-0.3
1,990,781	-		GFF1966	0.79	-0.9
1,990,782	-		GFF1966	0.79	-1.5
1,990,787	-		GFF1966	0.79	+1.9
1,990,836	-		GFF1966	0.86	-0.2
1,990,836	-		GFF1966	0.86	-0.4
1,990,836	-		GFF1966	0.86	-2.2
1,990,858	+		GFF1966	0.88	+0.2
1,990,872	-				-0.7
1,990,884	-				+0.9
1,990,898	+				-0.4
1,990,899	+				-2.7
1,990,899	+				+0.2
1,990,899	+				+0.3
1,990,899	+				-0.5
1,990,903	+				-2.1
1,990,906	-				-0.2
1,990,907	-				-0.3
1,990,907	-				+0.2
1,990,929	+				-1.0
1,990,964	+				+0.6
1,990,969	+				-0.4
1,990,977	-				-0.7
1,990,977	-				-0.4
1,991,013	-				+0.7
1,991,048	-				-0.4
1,991,063	+				-0.7
1,991,063	+				-0.8
1,991,124	-		GFF1967	0.16	-1.7
1,991,130	+		GFF1967	0.16	-0.5
1,991,143	-		GFF1967	0.18	+1.2
1,991,162	+		GFF1967	0.19	-1.5