Strain Fitness in Sphingobium sp. HT1-2 around GFF1890

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,913,183	+		GFF1888	0.63	-0.4
1,913,191	-		GFF1888	0.64	+1.8
1,913,205	+		GFF1888	0.67	-0.3
1,913,206	-		GFF1888	0.67	-2.0
1,913,207	+		GFF1888	0.67	-0.6
1,913,213	-		GFF1888	0.69	+0.3
1,913,215	-		GFF1888	0.69	-0.3
1,913,217	+		GFF1888	0.69	-0.5
1,913,229	+		GFF1888	0.72	+1.2
1,913,237	-		GFF1888	0.73	+2.2
1,913,279	+		GFF1888	0.81	+0.1
1,913,280	+		GFF1888	0.81	-0.8
1,913,289	+		GFF1888	0.83	-0.3
1,913,293	-		GFF1888	0.84	+0.9
1,913,311	+		GFF1888	0.87	-1.8
1,913,311	+		GFF1888	0.87	-0.5
1,913,319	-		GFF1888	0.89	+1.2
1,913,319	-		GFF1888	0.89	-0.6
1,913,339	+				+0.6
1,913,339	+				-0.8
1,913,339	+				+0.1
1,913,339	+				-0.1
1,913,339	+				-0.1
1,913,347	-				-1.0
1,913,361	+				-0.1
1,913,363	-				+1.5
1,913,366	+				-1.6
1,913,366	+				-1.1
1,913,366	+				-1.9
1,913,369	-				-1.1
1,913,374	-				-0.9
1,913,374	-				-0.5
1,913,374	-				-0.5
1,913,382	-				+0.2
1,913,392	-				+0.1
1,913,399	+				+2.0
1,913,409	+				-0.6
1,913,417	-				+0.5
1,913,426	-				+0.9
1,913,426	-				-1.3
1,913,426	-				-1.1
1,913,430	+				-1.5
1,913,430	+				+1.4
1,913,430	+				+0.2
1,913,430	+				+0.7
1,913,430	+				-0.3
1,913,430	+				+0.5
1,913,430	+				-0.7
1,913,430	+				+0.4
1,913,430	+				-1.1
1,913,438	-				-1.4
1,913,438	-				+1.2
1,913,438	-				+0.3
1,913,438	-				+0.0
1,913,438	-				+1.1
1,913,438	-				-0.3
1,913,438	-				-0.5
1,913,438	-				-1.2
1,913,444	-				-1.1
1,913,455	+				-2.1
1,913,455	+				-0.0
1,913,455	+				-0.9
1,913,455	+				+0.2
1,913,458	-				-1.7
1,913,487	+				+0.7
1,913,489	+				-0.3
1,913,504	+		GFF1889	0.10	-0.0
1,913,510	-		GFF1889	0.11	-1.9
1,913,514	+		GFF1889	0.12	+1.3
1,913,545	+		GFF1889	0.16	+0.4
1,913,566	-		GFF1889	0.20	-0.6
1,913,569	+		GFF1889	0.20	+0.1
1,913,570	+		GFF1889	0.20	-1.0
1,913,578	+		GFF1889	0.21	-0.3
1,913,611	+		GFF1889	0.26	+0.9
1,913,619	-		GFF1889	0.27	-0.9
1,913,620	+		GFF1889	0.27	+0.9
1,913,628	-		GFF1889	0.29	+0.3
1,913,723	-		GFF1889	0.43	-1.9
1,913,725	-		GFF1889	0.43	-0.5
1,913,730	-		GFF1889	0.44	-0.9
1,913,735	-		GFF1889	0.44	+0.8
1,913,756	-		GFF1889	0.47	+1.5
1,913,770	+		GFF1889	0.49	-0.6
1,913,802	+		GFF1889	0.54	-0.9
1,913,807	+		GFF1889	0.55	-0.2
1,913,807	+		GFF1889	0.55	+0.3
1,913,807	+		GFF1889	0.55	-1.1
1,913,807	+		GFF1889	0.55	-1.3
1,913,807	+		GFF1889	0.55	+0.0
1,913,812	+		GFF1889	0.56	+0.7
1,913,815	-		GFF1889	0.56	+0.6
1,913,820	-		GFF1889	0.57	-0.9
1,913,820	-		GFF1889	0.57	+0.3
1,913,835	+		GFF1889	0.59	+0.3
1,913,856	-		GFF1889	0.62	-1.7
1,913,877	+		GFF1889	0.65	-0.1
1,913,901	-		GFF1889	0.69	-0.8
1,913,915	+		GFF1889	0.71	-0.6
1,913,915	+		GFF1889	0.71	-1.1
1,913,916	+		GFF1889	0.71	+0.0
1,913,923	-		GFF1889	0.72	-0.7
1,913,933	-		GFF1889	0.73	-0.5
1,913,944	+		GFF1889	0.75	-0.2
1,913,948	+		GFF1889	0.76	-0.0
1,913,948	+		GFF1889	0.76	-0.3
1,913,950	-		GFF1889	0.76	+0.2
1,913,992	+		GFF1889	0.82	-0.6
1,913,992	+		GFF1889	0.82	-0.1
1,913,992	+		GFF1889	0.82	+1.2
1,913,997	+		GFF1889	0.83	+0.2
1,914,000	-		GFF1889	0.83	-1.4
1,914,000	-		GFF1889	0.83	+0.3
1,914,000	-		GFF1889	0.83	+0.0
1,914,000	-		GFF1889	0.83	+1.7
1,914,000	-		GFF1889	0.83	-0.9
1,914,047	+				-1.3
1,914,059	+				-0.0
1,914,059	+				+0.7
1,914,059	+				+1.8
1,915,148	+				-0.3
1,915,148	+				-0.8
1,915,148	+				-1.5
1,915,148	+				-0.0
1,915,156	-				+1.1
1,915,156	-				+0.4
1,915,156	-				+0.2
1,915,198	-				-1.3
1,915,258	-				-1.1
1,915,259	-				-0.3
1,915,273	-				-2.6
1,915,275	+				-0.0
1,915,275	+				-2.0
1,915,275	+				-0.4
1,915,275	+				-1.8
1,915,275	+				-1.0
1,915,275	+				+1.1
1,915,275	+				+0.1
1,915,275	+				-0.6
1,915,283	-				-0.3
1,915,283	-				-0.3
1,915,283	-				+0.2
1,915,283	-				+0.1
1,915,283	-				-2.7
1,915,283	-				-1.3
1,915,294	+				-1.1
1,915,294	+				-0.7
1,915,294	+				+0.5
1,915,302	-				-0.1
1,915,302	-				-1.7
1,915,305	+				+0.3
1,915,310	+				+0.8
1,915,310	+				-0.4
1,915,310	+				+0.2
1,915,318	-				+0.7
1,915,318	-				-0.3
1,915,318	-				-1.5
1,915,318	-				+0.5
1,915,318	-				+0.5
1,915,318	-				-0.7
1,915,318	-				-1.2
1,915,318	-				-1.3
1,915,341	+				+0.9
1,915,341	+				+0.9
1,915,349	-				-2.4
1,915,354	-				+0.7
1,915,383	+				+1.2
1,915,393	+				-1.3
1,915,393	+				-1.3
1,915,399	+				-1.8
1,915,399	+				-1.5
1,915,404	+				-2.1
1,915,404	+				-1.5
1,915,412	-				-3.4
1,915,412	-				-2.2
1,915,425	-				-0.4
1,915,484	+				-2.6
1,915,533	-		GFF1891	0.14	-0.8
1,915,540	-		GFF1891	0.15	-2.2
1,915,576	+		GFF1891	0.18	-2.4
1,915,584	+		GFF1891	0.19	-1.6
1,915,586	+		GFF1891	0.19	-0.9
1,915,586	+		GFF1891	0.19	-1.1
1,915,586	+		GFF1891	0.19	-1.6
1,915,586	+		GFF1891	0.19	-0.1
1,915,586	+		GFF1891	0.19	-0.3
1,915,586	+		GFF1891	0.19	-1.8
1,915,586	+		GFF1891	0.19	-1.3
1,915,586	+		GFF1891	0.19	-2.6
1,915,594	-		GFF1891	0.20	-2.3
1,915,594	-		GFF1891	0.20	-1.9
1,915,594	-		GFF1891	0.20	-2.6
1,915,594	-		GFF1891	0.20	-2.7
1,915,671	-		GFF1891	0.26	-1.8
1,915,685	+		GFF1891	0.28	-1.3
1,915,685	+		GFF1891	0.28	-1.8
1,915,709	+		GFF1891	0.30	-0.1
1,915,723	+		GFF1891	0.31	-0.8
1,915,731	-		GFF1891	0.32	-1.3
1,915,754	-		GFF1891	0.34	-1.7
1,915,757	+		GFF1891	0.34	-2.3
1,915,762	+		GFF1891	0.34	-1.5
1,915,814	-		GFF1891	0.39	-0.1
1,915,835	-		GFF1891	0.41	-2.1
1,915,894	+		GFF1891	0.46	-0.6
1,915,894	+		GFF1891	0.46	-1.2
1,915,902	-		GFF1891	0.47	-1.2
1,915,904	+		GFF1891	0.47	-1.9
1,915,904	-		GFF1891	0.47	-1.2
1,915,904	-		GFF1891	0.47	-3.5
1,915,904	-		GFF1891	0.47	+0.2
1,915,912	-		GFF1891	0.48	-3.0
1,915,914	-		GFF1891	0.48	-0.9
1,915,914	-		GFF1891	0.48	-1.8
1,915,921	+		GFF1891	0.49	-1.3
1,915,922	+		GFF1891	0.49	-2.0
1,915,922	+		GFF1891	0.49	-0.6
1,915,922	+		GFF1891	0.49	-1.8
1,915,922	+		GFF1891	0.49	-2.5
1,915,930	-		GFF1891	0.49	-0.4
1,915,930	-		GFF1891	0.49	-1.8
1,915,937	+		GFF1891	0.50	-2.9
1,915,938	-		GFF1891	0.50	-0.9
1,915,945	-		GFF1891	0.51	-1.7
1,915,962	-		GFF1891	0.52	-1.5
1,915,964	+		GFF1891	0.52	-1.1
1,915,964	-		GFF1891	0.52	-3.6
1,915,969	+		GFF1891	0.53	-2.6
1,915,972	+		GFF1891	0.53	-1.6
1,915,972	+		GFF1891	0.53	-1.4
1,915,972	+		GFF1891	0.53	-0.6
1,915,972	+		GFF1891	0.53	-3.2
1,915,980	-		GFF1891	0.54	-3.5
1,915,980	-		GFF1891	0.54	-1.5
1,915,980	-		GFF1891	0.54	-2.1
1,915,980	-		GFF1891	0.54	-1.3
1,916,006	+		GFF1891	0.56	-2.8
1,916,014	-		GFF1891	0.57	-3.0
1,916,030	-		GFF1891	0.58	-3.3
1,916,034	+		GFF1891	0.58	-1.9
1,916,034	+		GFF1891	0.58	-3.5
1,916,044	+		GFF1891	0.59	-0.5
1,916,062	+		GFF1891	0.61	-2.6
1,916,065	-		GFF1891	0.61	-2.6
1,916,067	+		GFF1891	0.61	-2.7
1,916,075	-		GFF1891	0.62	-1.3
1,916,075	-		GFF1891	0.62	+0.1
1,916,117	+		GFF1891	0.66	-1.3
1,916,117	+		GFF1891	0.66	-1.3
1,916,117	+		GFF1891	0.66	-1.3
1,916,201	-		GFF1891	0.73	-1.3
1,916,207	-		GFF1891	0.74	-1.5
1,916,215	+		GFF1891	0.74	-2.1
1,916,219	-		GFF1891	0.75	-3.2