Strain Fitness in Sphingobium sp. HT1-2 around GFF1871

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,897,121	+		GFF1870	0.23	-0.9
1,897,126	+		GFF1870	0.23	-0.4
1,897,129	-		GFF1870	0.23	+0.4
1,897,131	+		GFF1870	0.24	-1.8
1,897,134	-		GFF1870	0.24	-0.8
1,897,134	-		GFF1870	0.24	-2.7
1,897,136	+		GFF1870	0.24	+1.4
1,897,136	+		GFF1870	0.24	+2.0
1,897,142	+		GFF1870	0.24	+1.2
1,897,144	-		GFF1870	0.25	+0.5
1,897,144	-		GFF1870	0.25	+0.1
1,897,144	-		GFF1870	0.25	-0.1
1,897,147	+		GFF1870	0.25	+0.5
1,897,147	+		GFF1870	0.25	+0.5
1,897,147	+		GFF1870	0.25	+0.5
1,897,152	+		GFF1870	0.25	-1.0
1,897,152	+		GFF1870	0.25	-0.7
1,897,159	+		GFF1870	0.26	-0.7
1,897,159	+		GFF1870	0.26	-1.2
1,897,159	+		GFF1870	0.26	+1.2
1,897,160	-		GFF1870	0.26	+0.5
1,897,167	-		GFF1870	0.26	-1.6
1,897,167	-		GFF1870	0.26	+0.0
1,897,169	+		GFF1870	0.27	-2.0
1,897,217	+		GFF1870	0.30	+0.5
1,897,223	+		GFF1870	0.31	-2.5
1,897,226	-		GFF1870	0.31	-0.2
1,897,229	+		GFF1870	0.31	-2.0
1,897,231	-		GFF1870	0.32	+0.4
1,897,231	-		GFF1870	0.32	-1.6
1,897,231	-		GFF1870	0.32	-1.0
1,897,231	-		GFF1870	0.32	-0.4
1,897,231	-		GFF1870	0.32	-1.3
1,897,262	+		GFF1870	0.34	-0.8
1,897,278	+		GFF1870	0.35	+0.0
1,897,278	+		GFF1870	0.35	-2.1
1,897,320	+		GFF1870	0.39	-1.8
1,897,325	+		GFF1870	0.39	+0.2
1,897,325	+		GFF1870	0.39	+0.2
1,897,333	-		GFF1870	0.40	-1.0
1,897,342	+		GFF1870	0.40	-0.2
1,897,352	+		GFF1870	0.41	+0.3
1,897,352	+		GFF1870	0.41	+0.7
1,897,360	-		GFF1870	0.42	+0.4
1,897,379	-		GFF1870	0.43	+0.9
1,897,379	-		GFF1870	0.43	-0.1
1,897,379	-		GFF1870	0.43	-0.4
1,897,384	-		GFF1870	0.44	+0.6
1,897,384	-		GFF1870	0.44	-0.1
1,897,384	-		GFF1870	0.44	+0.4
1,897,384	-		GFF1870	0.44	-0.1
1,897,384	-		GFF1870	0.44	-1.0
1,897,405	-		GFF1870	0.45	-0.9
1,897,493	-		GFF1870	0.52	-1.2
1,897,495	+		GFF1870	0.53	+1.2
1,897,503	-		GFF1870	0.53	-1.6
1,897,503	-		GFF1870	0.53	-1.4
1,897,509	-		GFF1870	0.54	-2.4
1,897,511	+		GFF1870	0.54	-1.1
1,897,550	+		GFF1870	0.57	-0.6
1,897,550	+		GFF1870	0.57	-0.7
1,897,556	+		GFF1870	0.57	+0.8
1,897,622	+		GFF1870	0.63	-0.3
1,897,622	+		GFF1870	0.63	-0.6
1,897,622	+		GFF1870	0.63	+0.4
1,897,623	+		GFF1870	0.63	+0.2
1,897,623	+		GFF1870	0.63	+0.0
1,897,624	+		GFF1870	0.63	-0.5
1,897,624	+		GFF1870	0.63	-1.3
1,897,624	+		GFF1870	0.63	+0.9
1,897,624	-		GFF1870	0.63	-2.1
1,897,634	+		GFF1870	0.64	-1.2
1,897,642	-		GFF1870	0.64	-0.4
1,897,642	-		GFF1870	0.64	-0.2
1,897,654	-		GFF1870	0.65	-0.3
1,897,665	+		GFF1870	0.66	-0.1
1,897,673	-		GFF1870	0.67	-0.7
1,897,678	-		GFF1870	0.67	+1.1
1,897,678	-		GFF1870	0.67	-0.9
1,897,688	-		GFF1870	0.68	-2.6
1,897,688	-		GFF1870	0.68	+0.9
1,897,709	+		GFF1870	0.70	-1.0
1,897,714	+		GFF1870	0.70	-1.5
1,897,715	+		GFF1870	0.70	-1.9
1,897,723	-		GFF1870	0.71	-2.2
1,897,739	+		GFF1870	0.72	+0.2
1,897,739	+		GFF1870	0.72	-1.2
1,897,739	+		GFF1870	0.72	+0.3
1,897,739	+		GFF1870	0.72	-0.1
1,897,739	+		GFF1870	0.72	-0.8
1,897,747	-		GFF1870	0.73	-0.4
1,897,747	-		GFF1870	0.73	+0.4
1,897,747	-		GFF1870	0.73	+0.4
1,897,747	-		GFF1870	0.73	-1.4
1,897,747	-		GFF1870	0.73	+0.2
1,897,747	-		GFF1870	0.73	-0.7
1,897,747	-		GFF1870	0.73	-1.5
1,897,757	+		GFF1870	0.74	-0.3
1,897,767	+		GFF1870	0.74	-0.9
1,897,767	-		GFF1870	0.74	+1.8
1,897,792	-		GFF1870	0.76	+0.5
1,897,792	-		GFF1870	0.76	+0.2
1,897,809	+		GFF1870	0.78	-0.8
1,897,809	+		GFF1870	0.78	-0.4
1,897,809	+		GFF1870	0.78	+1.7
1,897,809	+		GFF1870	0.78	+0.5
1,897,817	-		GFF1870	0.78	-1.7
1,897,817	-		GFF1870	0.78	-1.0
1,897,820	+		GFF1870	0.79	-0.9
1,897,831	-		GFF1870	0.79	-1.8
1,897,848	+		GFF1870	0.81	-0.7
1,897,858	+		GFF1870	0.82	+0.7
1,897,897	-		GFF1870	0.85	-1.8
1,897,898	+		GFF1870	0.85	-0.3
1,897,908	+		GFF1870	0.86	-2.3
1,897,926	+		GFF1870	0.87	-0.1
1,897,934	+		GFF1870	0.88	-0.5
1,897,934	+		GFF1870	0.88	-1.0
1,897,934	-		GFF1870	0.88	-0.6
1,897,942	-		GFF1870	0.88	-1.1
1,898,025	-				-1.6
1,898,040	+				-0.2
1,898,042	+				-1.6
1,898,042	+				+0.9
1,898,042	+				+0.6
1,898,042	+				+0.1
1,898,042	+				+0.2
1,898,048	-				-1.0
1,898,050	-				+0.4
1,898,050	-				-1.3
1,898,067	+				+0.9
1,898,075	-				+1.0
1,898,075	-				-1.7
1,898,075	-				-2.0
1,898,075	-				+1.7
1,898,075	-				+0.4
1,898,106	+				+1.7
1,898,106	+				-1.1
1,898,106	+				+0.8
1,898,114	-				-1.3
1,898,116	-				-0.8
1,898,116	-				+0.5
1,898,116	-				-0.9
1,898,116	-				-0.8
1,898,116	-				-0.3
1,898,118	+				-2.0
1,898,121	-				-0.7
1,898,125	+				+0.1
1,898,126	-				-0.1
1,898,133	-				-0.7
1,898,152	+				+0.4
1,898,160	-				-0.3
1,898,161	+				-0.9
1,898,175	-				+1.0
1,898,180	+				-1.5
1,898,193	+				-0.8
1,898,195	+				+1.1
1,898,195	+				-1.5
1,898,201	-				+0.6
1,898,203	-				-1.4
1,898,205	+				+0.7
1,898,205	+				-0.4
1,898,207	+				-0.0
1,898,210	+				+0.9
1,898,211	-				+0.0
1,898,213	-				-1.8
1,898,220	-				+0.2
1,898,220	-				-1.7
1,898,220	-				+0.1
1,898,227	+				+0.1
1,898,227	+				-0.2
1,898,227	+				+0.5
1,898,227	+				+0.2
1,898,235	-				+0.0
1,898,237	+				-0.8
1,898,245	-				-0.8
1,898,288	+		GFF1871	0.11	-2.5
1,898,302	-		GFF1871	0.12	-0.0
1,898,302	-		GFF1871	0.12	+0.4
1,898,304	+		GFF1871	0.12	-0.6
1,898,309	+		GFF1871	0.12	-0.6
1,898,309	+		GFF1871	0.12	-0.6
1,898,317	-		GFF1871	0.12	-0.9
1,898,335	-		GFF1871	0.14	-0.8
1,898,342	+		GFF1871	0.14	-0.1
1,898,342	+		GFF1871	0.14	+1.8
1,898,348	+		GFF1871	0.14	-0.5
1,898,405	+		GFF1871	0.18	-0.5
1,898,405	+		GFF1871	0.18	-0.3
1,898,405	+		GFF1871	0.18	-0.3
1,898,405	+		GFF1871	0.18	-1.7
1,898,413	-		GFF1871	0.18	-0.3
1,898,413	-		GFF1871	0.18	-1.7
1,898,413	-		GFF1871	0.18	-1.3
1,898,437	-		GFF1871	0.20	+1.1
1,898,470	+		GFF1871	0.22	+0.8
1,898,489	+		GFF1871	0.23	-0.5
1,898,489	+		GFF1871	0.23	-0.7
1,898,489	+		GFF1871	0.23	-1.8
1,898,497	-		GFF1871	0.24	-2.7
1,898,513	+		GFF1871	0.25	-1.3
1,898,513	+		GFF1871	0.25	-0.5
1,898,513	+		GFF1871	0.25	-0.4
1,898,521	-		GFF1871	0.25	+0.8
1,898,531	-		GFF1871	0.26	+0.1
1,898,535	+		GFF1871	0.26	+0.1
1,898,563	+		GFF1871	0.28	-0.6
1,898,563	+		GFF1871	0.28	+1.0
1,898,563	+		GFF1871	0.28	-0.8
1,898,563	+		GFF1871	0.28	-1.5
1,898,568	+		GFF1871	0.28	-0.9
1,898,571	-		GFF1871	0.28	-0.9
1,898,571	-		GFF1871	0.28	+0.0
1,898,571	-		GFF1871	0.28	-0.5
1,898,571	-		GFF1871	0.28	+0.6
1,898,571	-		GFF1871	0.28	-2.2
1,898,576	-		GFF1871	0.29	-0.8
1,898,576	-		GFF1871	0.29	-1.3
1,898,618	+		GFF1871	0.31	+0.3
1,898,623	+		GFF1871	0.31	+1.8
1,898,638	+		GFF1871	0.32	-0.8
1,898,639	+		GFF1871	0.32	-1.5
1,898,639	+		GFF1871	0.32	-1.1
1,898,639	+		GFF1871	0.32	-0.1
1,898,639	+		GFF1871	0.32	-0.1
1,898,646	-		GFF1871	0.33	+0.6
1,898,646	-		GFF1871	0.33	+1.1
1,898,671	+		GFF1871	0.34	-0.2
1,898,679	+		GFF1871	0.35	+0.9
1,898,679	-		GFF1871	0.35	-1.4
1,898,700	+		GFF1871	0.36	+0.7
1,898,700	+		GFF1871	0.36	-0.7
1,898,700	+		GFF1871	0.36	-2.0
1,898,700	+		GFF1871	0.36	+0.9
1,898,708	-		GFF1871	0.37	-0.5
1,898,708	-		GFF1871	0.37	-1.7
1,898,731	-		GFF1871	0.38	+0.3
1,898,746	+		GFF1871	0.39	-0.2
1,898,748	+		GFF1871	0.39	-0.2
1,898,754	-		GFF1871	0.40	+0.7
1,898,765	+		GFF1871	0.40	-0.2
1,898,765	+		GFF1871	0.40	-0.3
1,898,773	-		GFF1871	0.41	+0.8
1,898,773	-		GFF1871	0.41	-0.0
1,898,775	-		GFF1871	0.41	-1.9
1,898,776	-		GFF1871	0.41	+0.2
1,898,784	-		GFF1871	0.41	-0.0
1,898,788	+		GFF1871	0.42	-0.1
1,898,816	+		GFF1871	0.43	-1.5
1,898,816	-		GFF1871	0.43	-1.0
1,898,819	-		GFF1871	0.44	-0.6
1,898,831	-		GFF1871	0.44	-1.5
1,898,849	+		GFF1871	0.45	-1.3
1,898,852	-		GFF1871	0.46	+0.5
1,898,853	+		GFF1871	0.46	-1.7
1,898,854	+		GFF1871	0.46	+0.2
1,898,854	+		GFF1871	0.46	-1.8
1,898,859	+		GFF1871	0.46	-0.8
1,898,859	+		GFF1871	0.46	+0.6
1,898,859	+		GFF1871	0.46	+0.2
1,898,873	-		GFF1871	0.47	+0.4
1,898,883	-		GFF1871	0.48	+0.5
1,898,908	-		GFF1871	0.49	+0.1
1,898,925	-		GFF1871	0.50	+0.5
1,898,926	-		GFF1871	0.50	-1.1
1,898,956	+		GFF1871	0.52	+0.6
1,898,959	-		GFF1871	0.52	+0.3
1,898,964	-		GFF1871	0.53	+0.3
1,898,964	-		GFF1871	0.53	-0.2
1,898,969	-		GFF1871	0.53	+0.5
1,898,977	+		GFF1871	0.53	-0.5
1,898,977	+		GFF1871	0.53	+0.2
1,898,982	-		GFF1871	0.54	-0.2
1,898,992	-		GFF1871	0.54	-1.4
1,899,008	+		GFF1871	0.55	-0.2
1,899,008	+		GFF1871	0.55	-1.5
1,899,013	+		GFF1871	0.56	+1.5
1,899,015	+		GFF1871	0.56	+0.5
1,899,016	-		GFF1871	0.56	-1.1
1,899,016	-		GFF1871	0.56	+0.7
1,899,016	-		GFF1871	0.56	-1.1
1,899,016	-		GFF1871	0.56	-2.3
1,899,041	+		GFF1871	0.57	-0.8
1,899,072	+		GFF1871	0.59	-1.8
1,899,072	+		GFF1871	0.59	+0.7
1,899,081	+		GFF1871	0.60	-1.0
1,899,081	+		GFF1871	0.60	-1.6
1,899,109	-		GFF1871	0.62	+0.8
1,899,121	-		GFF1871	0.62	-0.8
1,899,129	-		GFF1871	0.63	+0.7
1,899,130	+		GFF1871	0.63	+0.0
1,899,136	+		GFF1871	0.63	-1.5
1,899,144	-		GFF1871	0.64	-0.7
1,899,203	+		GFF1871	0.67	-0.5
1,899,203	+		GFF1871	0.67	+0.7
1,899,214	-		GFF1871	0.68	-1.2
1,899,218	-		GFF1871	0.68	+0.2
1,899,223	-		GFF1871	0.69	-0.4
1,899,223	-		GFF1871	0.69	+1.1
1,899,223	-		GFF1871	0.69	+0.9
1,899,235	+		GFF1871	0.69	-1.6
1,899,253	-		GFF1871	0.71	+0.3
1,899,291	-		GFF1871	0.73	+0.6
1,899,294	-		GFF1871	0.73	-2.1
1,899,303	+		GFF1871	0.74	-0.0
1,899,330	+		GFF1871	0.75	-1.8
1,899,347	+		GFF1871	0.76	-0.8
1,899,347	+		GFF1871	0.76	-0.8
1,899,347	+		GFF1871	0.76	-1.3
1,899,355	+		GFF1871	0.77	+0.4
1,899,372	-		GFF1871	0.78	-1.2
1,899,372	-		GFF1871	0.78	+0.2
1,899,379	-		GFF1871	0.78	-1.5
1,899,398	-		GFF1871	0.80	-1.3
1,899,423	+		GFF1871	0.81	-0.7
1,899,445	-		GFF1871	0.82	+1.3
1,899,447	+		GFF1871	0.83	-0.3
1,899,447	+		GFF1871	0.83	-1.8
1,899,455	-		GFF1871	0.83	+0.6
1,899,512	-		GFF1871	0.87	-1.0
1,899,538	-		GFF1871	0.88	-0.0
1,899,541	+		GFF1871	0.88	+0.6
1,899,546	+		GFF1871	0.89	-1.2
1,899,546	+		GFF1871	0.89	+0.4
1,899,546	+		GFF1871	0.89	+0.7
1,899,546	+		GFF1871	0.89	-0.9
1,899,546	+		GFF1871	0.89	+0.7
1,899,546	+		GFF1871	0.89	+0.4
1,899,549	-		GFF1871	0.89	+0.3
1,899,554	-		GFF1871	0.89	+1.2
1,899,554	-		GFF1871	0.89	+0.1
1,899,554	-		GFF1871	0.89	-0.5
1,899,554	-		GFF1871	0.89	-0.6
1,899,554	-		GFF1871	0.89	+0.3
1,899,554	-		GFF1871	0.89	-1.7
1,899,554	-		GFF1871	0.89	-1.6
1,899,554	-		GFF1871	0.89	+0.7
1,899,554	-		GFF1871	0.89	+0.5
1,899,560	+		GFF1871	0.90	-1.7
1,899,560	+		GFF1871	0.90	+0.9
1,899,565	+		GFF1871	0.90	-0.9
1,899,565	+		GFF1871	0.90	-1.8
1,899,565	+		GFF1871	0.90	-0.1
1,899,565	+		GFF1871	0.90	+0.2
1,899,565	+		GFF1871	0.90	-1.9
1,899,565	+		GFF1871	0.90	-0.8
1,899,565	+		GFF1871	0.90	+0.2
1,899,565	+		GFF1871	0.90	+0.2
1,899,565	+		GFF1871	0.90	+0.6
1,899,565	+		GFF1871	0.90	-0.8
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