Strain Fitness in Sphingobium sp. HT1-2 around GFF1857

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,885,957	+		GFF1855	0.81	-0.8
1,885,982	+		GFF1855	0.83	-1.8
1,885,990	-		GFF1855	0.84	-1.8
1,885,990	-		GFF1855	0.84	+0.3
1,885,992	+		GFF1855	0.84	-1.1
1,885,997	+		GFF1855	0.84	+1.0
1,886,013	+		GFF1855	0.86	-0.6
1,886,061	-				-1.5
1,886,063	-				-1.7
1,886,097	+				-0.8
1,886,097	+				-2.3
1,886,104	+				-1.5
1,886,112	-				-2.4
1,886,112	-				-1.3
1,886,112	-				-1.5
1,886,145	-				-0.2
1,886,177	-				-1.5
1,886,199	+				+1.1
1,886,216	+				-1.7
1,886,224	-				+0.5
1,886,224	-				+0.1
1,886,241	-				+1.1
1,886,241	-				-0.8
1,886,259	+				-0.3
1,886,259	-				-2.0
1,886,273	-				+0.2
1,886,294	-				+0.0
1,886,312	+		GFF1856	0.12	-1.3
1,886,312	+		GFF1856	0.12	-0.6
1,886,312	+		GFF1856	0.12	-1.7
1,886,312	+		GFF1856	0.12	-1.6
1,886,312	+		GFF1856	0.12	-0.6
1,886,320	-		GFF1856	0.13	-0.6
1,886,320	-		GFF1856	0.13	-1.0
1,886,348	+		GFF1856	0.16	-1.6
1,886,353	+		GFF1856	0.17	-2.2
1,886,353	+		GFF1856	0.17	-1.7
1,886,353	+		GFF1856	0.17	-1.4
1,886,353	+		GFF1856	0.17	-0.6
1,886,353	+		GFF1856	0.17	-1.3
1,886,353	+		GFF1856	0.17	-1.7
1,886,353	+		GFF1856	0.17	+1.2
1,886,353	+		GFF1856	0.17	-1.1
1,886,353	+		GFF1856	0.17	-0.6
1,886,353	+		GFF1856	0.17	-1.3
1,886,353	+		GFF1856	0.17	-1.8
1,886,356	-		GFF1856	0.17	+0.4
1,886,361	-		GFF1856	0.18	-2.1
1,886,361	-		GFF1856	0.18	+0.4
1,886,361	-		GFF1856	0.18	-0.6
1,886,361	-		GFF1856	0.18	+0.4
1,886,361	-		GFF1856	0.18	-1.3
1,886,361	-		GFF1856	0.18	-2.7
1,886,361	-		GFF1856	0.18	-1.3
1,886,361	-		GFF1856	0.18	-1.5
1,886,361	-		GFF1856	0.18	+0.8
1,886,368	+		GFF1856	0.19	-0.9
1,886,434	+		GFF1856	0.27	-0.8
1,886,439	+		GFF1856	0.28	-0.9
1,886,447	-		GFF1856	0.29	+0.7
1,886,516	+		GFF1856	0.38	+0.3
1,886,516	+		GFF1856	0.38	-1.0
1,886,516	+		GFF1856	0.38	-1.3
1,886,519	-		GFF1856	0.38	-2.1
1,886,521	+		GFF1856	0.39	-0.7
1,886,524	-		GFF1856	0.39	+0.8
1,886,524	-		GFF1856	0.39	-1.3
1,886,524	-		GFF1856	0.39	-1.0
1,886,524	-		GFF1856	0.39	-1.2
1,886,524	-		GFF1856	0.39	-0.5
1,886,531	-		GFF1856	0.40	-1.3
1,886,533	+		GFF1856	0.40	-1.2
1,886,541	-		GFF1856	0.41	-1.1
1,886,572	+		GFF1856	0.45	-2.0
1,886,575	-		GFF1856	0.46	-1.9
1,886,575	-		GFF1856	0.46	-0.2
1,886,629	-		GFF1856	0.53	-1.2
1,886,653	-		GFF1856	0.56	-1.3
1,886,711	+		GFF1856	0.63	-1.8
1,886,724	-		GFF1856	0.65	-0.3
1,886,727	+		GFF1856	0.65	-1.2
1,886,735	-		GFF1856	0.66	+0.2
1,886,735	-		GFF1856	0.66	-1.5
1,886,772	+		GFF1856	0.71	-1.2
1,886,772	+		GFF1856	0.71	-1.1
1,886,780	-		GFF1856	0.72	+1.4
1,886,780	-		GFF1856	0.72	-2.8
1,886,780	-		GFF1856	0.72	-1.6
1,886,848	+		GFF1856	0.81	+0.0
1,886,848	+		GFF1856	0.81	-0.1
1,886,854	-		GFF1856	0.82	-1.7
1,886,856	-		GFF1856	0.82	-0.5
1,886,865	+		GFF1856	0.83	-1.8
1,886,865	+		GFF1856	0.83	+0.7
1,886,865	+		GFF1856	0.83	-1.3
1,886,865	+		GFF1856	0.83	-2.3
1,886,865	+		GFF1856	0.83	+0.3
1,886,869	+		GFF1856	0.84	-0.9
1,886,873	-		GFF1856	0.84	-0.5
1,886,873	-		GFF1856	0.84	-0.6
1,886,929	+				-2.1
1,886,931	+				-1.5
1,886,939	+				-1.3
1,886,947	-				-0.5
1,886,965	-				-0.7
1,886,970	+				-0.3
1,886,996	-				-0.1
1,886,996	-				-0.2
1,886,997	+				+1.3
1,886,998	-				-1.7
1,887,000	-				-0.2
1,887,011	-				-1.6
1,887,028	+				-1.7
1,887,028	+				-1.2
1,887,036	-		GFF1857	0.10	+0.0
1,887,036	-		GFF1857	0.10	+0.8
1,887,056	-		GFF1857	0.13	-0.8
1,887,072	+		GFF1857	0.15	-1.5
1,887,080	-		GFF1857	0.16	-2.7
1,887,090	-		GFF1857	0.17	+1.5
1,887,136	+		GFF1857	0.23	-0.6
1,887,161	+		GFF1857	0.26	+0.8
1,887,180	+		GFF1857	0.29	-1.3
1,887,201	-		GFF1857	0.31	-1.3
1,887,201	-		GFF1857	0.31	+0.1
1,887,226	-		GFF1857	0.34	+0.4
1,887,229	+		GFF1857	0.35	-1.7
1,887,237	-		GFF1857	0.36	-0.7
1,887,237	-		GFF1857	0.36	-0.7
1,887,295	-		GFF1857	0.43	-1.0
1,887,327	+		GFF1857	0.47	-1.2
1,887,388	-		GFF1857	0.55	-0.5
1,887,418	+		GFF1857	0.59	+0.4
1,887,437	+		GFF1857	0.61	-0.2
1,887,437	+		GFF1857	0.61	-1.5
1,887,437	+		GFF1857	0.61	-0.2
1,887,437	+		GFF1857	0.61	-2.1
1,887,437	+		GFF1857	0.61	+0.9
1,887,437	+		GFF1857	0.61	-0.5
1,887,445	-		GFF1857	0.62	-1.1
1,887,445	-		GFF1857	0.62	-1.3
1,887,445	-		GFF1857	0.62	-2.1
1,887,455	-		GFF1857	0.64	-0.2
1,887,498	+		GFF1857	0.69	-0.3
1,887,513	-		GFF1857	0.71	-1.7
1,887,536	+		GFF1857	0.74	-0.2
1,887,541	+		GFF1857	0.75	+0.0
1,887,541	+		GFF1857	0.75	+0.2
1,887,541	+		GFF1857	0.75	+0.6
1,887,541	+		GFF1857	0.75	-0.6
1,887,546	+		GFF1857	0.75	-1.3
1,887,549	-		GFF1857	0.76	-1.0
1,887,549	-		GFF1857	0.76	-0.6
1,887,549	-		GFF1857	0.76	+0.3
1,887,549	-		GFF1857	0.76	+0.1
1,887,587	-		GFF1857	0.81	-1.5
1,887,589	-		GFF1857	0.81	+1.5
1,887,605	+		GFF1857	0.83	+0.8
1,887,613	-		GFF1857	0.84	+0.8
1,887,624	-		GFF1857	0.85	-0.6
1,887,635	+		GFF1857	0.87	-0.6
1,887,658	-		GFF1857	0.90	-0.8
1,887,658	-		GFF1857	0.90	-1.2
1,887,667	+				-1.1
1,887,707	+				+0.4
1,887,724	-				+0.3
1,887,733	+				-2.0
1,887,735	-				-1.8
1,887,754	+				-0.5
1,887,781	+				-1.8
1,887,782	+				-1.7
1,887,789	+				+0.2
1,887,789	-				-1.5
1,887,790	-				-2.1
1,887,790	-				-1.3
1,887,821	+		GFF1858	0.12	+0.7
1,887,821	+		GFF1858	0.12	+0.8
1,887,821	+		GFF1858	0.12	-0.3
1,887,829	-		GFF1858	0.13	-0.5
1,887,896	-		GFF1858	0.22	-0.9
1,887,954	+		GFF1858	0.30	-1.3
1,887,965	-		GFF1858	0.32	+0.7
1,887,990	+		GFF1858	0.35	+1.1
1,887,990	+		GFF1858	0.35	-1.3
1,887,998	-		GFF1858	0.36	-1.9
1,888,031	+		GFF1858	0.41	+0.8
1,888,065	+		GFF1858	0.46	-1.6
1,888,076	-		GFF1858	0.47	+0.4
1,888,083	-		GFF1858	0.48	+0.8
1,888,101	+		GFF1858	0.51	-1.8
1,888,101	+		GFF1858	0.51	-1.3
1,888,138	+		GFF1858	0.56	-2.3
1,888,146	+		GFF1858	0.57	-0.3
1,888,146	+		GFF1858	0.57	-0.6
1,888,154	-		GFF1858	0.58	-0.3
1,888,157	+		GFF1858	0.58	+0.1
1,888,185	+		GFF1858	0.62	-1.3
1,888,204	+		GFF1858	0.65	-0.5
1,888,212	-		GFF1858	0.66	-0.8
1,888,308	+		GFF1858	0.79	-1.6
1,888,311	-		GFF1858	0.80	-2.0
1,888,316	-		GFF1858	0.80	-2.0
1,888,430	+				-1.8
1,888,447	+				-1.8
1,888,511	-				-1.5
1,888,559	-		GFF1859	0.17	-0.8
1,888,571	-		GFF1859	0.19	-0.1
1,888,628	+		GFF1859	0.28	-1.5
1,888,636	-		GFF1859	0.29	+0.2
1,888,653	+		GFF1859	0.32	-1.7
1,888,661	-		GFF1859	0.33	+0.2
1,888,663	-		GFF1859	0.33	-2.1
1,888,676	-		GFF1859	0.35	+0.5
1,888,708	-		GFF1859	0.40	+0.3