Strain Fitness in Sphingobium sp. HT1-2 around GFF1802

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,823,121	+				-1.6
1,823,125	+				-1.7
1,823,133	-				+0.9
1,823,133	-				-0.4
1,823,142	+				+1.2
1,823,193	+				-0.8
1,823,193	+				-1.7
1,823,193	+				-1.7
1,823,193	+				-1.3
1,823,193	+				+1.0
1,823,193	+				-0.4
1,823,193	+				+0.5
1,823,201	-				-0.9
1,823,201	-				-0.1
1,823,201	-				-0.8
1,823,201	-				-1.1
1,823,201	-				+1.0
1,823,201	-				-0.5
1,823,232	+				-1.5
1,823,232	-				-0.5
1,823,250	-				+1.1
1,823,260	-				+0.3
1,823,260	-				-0.8
1,823,273	+				-3.0
1,823,273	+				+1.1
1,823,335	+				-0.1
1,823,335	+				-2.3
1,823,335	+				-1.8
1,823,335	+				-0.6
1,823,335	+				-0.4
1,823,343	-				+0.9
1,823,346	+				+1.2
1,823,349	-				-0.2
1,823,363	+		GFF1801	0.16	+0.6
1,823,371	-		GFF1801	0.19	+0.5
1,823,376	+		GFF1801	0.21	+0.8
1,823,376	+		GFF1801	0.21	-0.1
1,823,383	+		GFF1801	0.24	-1.0
1,823,383	-		GFF1801	0.24	-2.1
1,823,395	+		GFF1801	0.30	+0.6
1,823,405	+		GFF1801	0.34	-0.1
1,823,405	+		GFF1801	0.34	-0.9
1,823,418	-		GFF1801	0.40	+0.1
1,823,423	-		GFF1801	0.42	-0.6
1,823,430	+		GFF1801	0.45	-1.4
1,823,435	+		GFF1801	0.48	-0.3
1,823,435	+		GFF1801	0.48	+0.6
1,823,438	-		GFF1801	0.49	-1.2
1,823,438	-		GFF1801	0.49	-1.7
1,823,438	-		GFF1801	0.49	+0.8
1,823,448	-		GFF1801	0.53	-0.3
1,823,448	-		GFF1801	0.53	+0.6
1,823,453	-		GFF1801	0.56	-0.6
1,823,453	-		GFF1801	0.56	-0.1
1,823,453	-		GFF1801	0.56	-0.5
1,823,453	-		GFF1801	0.56	+1.9
1,823,455	+		GFF1801	0.56	-1.8
1,823,455	+		GFF1801	0.56	-0.8
1,823,455	+		GFF1801	0.56	+0.1
1,823,455	+		GFF1801	0.56	+0.1
1,823,455	+		GFF1801	0.56	-1.1
1,823,455	+		GFF1801	0.56	-0.9
1,823,455	+		GFF1801	0.56	+0.2
1,823,455	+		GFF1801	0.56	-1.2
1,823,455	+		GFF1801	0.56	-0.2
1,823,455	+		GFF1801	0.56	+1.1
1,823,455	+		GFF1801	0.56	-0.7
1,823,455	+		GFF1801	0.56	-0.6
1,823,455	+		GFF1801	0.56	+0.6
1,823,455	+		GFF1801	0.56	+1.2
1,823,462	+		GFF1801	0.60	-1.0
1,823,463	-		GFF1801	0.60	+1.2
1,823,463	-		GFF1801	0.60	-2.3
1,823,463	-		GFF1801	0.60	+0.4
1,823,463	-		GFF1801	0.60	-0.8
1,823,463	-		GFF1801	0.60	-0.7
1,823,463	-		GFF1801	0.60	-0.3
1,823,463	-		GFF1801	0.60	+0.0
1,823,485	+		GFF1801	0.70	-0.3
1,823,498	-		GFF1801	0.76	-0.8
1,823,498	-		GFF1801	0.76	+1.0
1,823,515	+		GFF1801	0.83	+1.1
1,823,515	+		GFF1801	0.83	-1.0
1,823,515	+		GFF1801	0.83	-0.2
1,823,515	+		GFF1801	0.83	-1.8
1,823,515	+		GFF1801	0.83	+0.3
1,823,523	-		GFF1801	0.87	+0.2
1,823,523	-		GFF1801	0.87	+0.8
1,823,523	-		GFF1801	0.87	-0.6
1,823,523	-		GFF1801	0.87	+1.4
1,823,523	-		GFF1801	0.87	-0.1
1,823,523	-		GFF1801	0.87	+0.5
1,823,556	+				+0.5
1,823,556	+				+0.5
1,823,562	-				+0.6
1,823,562	-				+0.4
1,823,564	+				+0.0
1,823,564	+				-2.5
1,823,572	-				-0.1
1,823,595	+				-1.7
1,823,620	+				-0.2
1,823,623	+				+0.5
1,823,624	+				-1.0
1,823,631	+				-0.5
1,823,631	+				-0.4
1,823,631	+				-0.6
1,823,631	+				+0.7
1,823,631	+				-0.2
1,823,632	-				-1.0
1,823,632	-				-0.1
1,823,639	-				-0.8
1,823,639	-				+0.3
1,823,643	+				-2.5
1,823,650	+				-0.4
1,823,650	+				+0.9
1,823,651	-				-1.6
1,823,658	-				+1.4
1,823,668	+				-3.1
1,823,676	-				+0.6
1,823,678	+				+0.8
1,823,678	+				+1.0
1,823,678	+				-0.2
1,823,678	+				+0.8
1,823,685	+				-1.6
1,823,686	-				-1.2
1,823,686	-				-1.5
1,823,686	-				-0.3
1,823,686	-				+0.7
1,823,693	+				+0.3
1,823,693	-				-1.2
1,823,693	-				+1.0
1,823,700	+				+0.8
1,823,748	-				+0.4
1,823,770	+				+0.2
1,823,780	+				-0.8
1,823,808	-				-0.7
1,823,831	-				+0.7
1,823,833	-				+0.1
1,823,833	-				+0.7
1,823,833	-				+0.6
1,823,833	-				+1.8
1,823,833	-				+0.6
1,823,910	+				-0.3
1,823,910	+				-0.1
1,823,910	+				-1.9
1,823,910	+				-0.7
1,823,910	+				+1.1
1,823,921	+				-2.2
1,823,921	+				-0.2
1,823,921	+				-2.2
1,823,921	+				+0.4
1,823,934	+				-0.9
1,823,966	+				-0.2
1,823,966	+				-1.0
1,823,966	+				+1.1
1,823,966	+				-0.7
1,823,971	+				+1.1
1,823,974	-				+0.2
1,823,974	-				-0.5
1,824,035	-				+0.4
1,824,056	+				+1.1
1,824,080	+				-1.2
1,824,086	-				+0.6
1,824,092	+				-2.5
1,824,094	+				+0.5
1,824,102	+				-0.9
1,824,102	+				+0.7
1,824,102	+				-1.6
1,824,102	+				-1.2
1,824,102	+				-1.1
1,824,102	+				+0.2
1,824,102	+				-1.3
1,824,102	+				-0.2
1,824,102	+				-1.7
1,824,102	+				-0.0
1,824,102	+				-1.7
1,824,102	+				-0.1
1,824,102	+				-1.0
1,824,102	+				-0.3
1,824,102	+				-0.5
1,824,102	+				-1.0
1,824,102	+				-2.1
1,824,102	-				-0.1
1,824,110	-				+0.0
1,824,110	-				-1.3
1,824,110	-				-0.6
1,824,110	-				-2.1
1,824,110	-				+0.3
1,824,110	-				-1.0
1,824,110	-				-0.1
1,824,110	-				-0.5
1,824,110	-				+0.4
1,824,110	-				+0.2
1,824,110	-				-1.0
1,824,110	-				-1.6
1,824,110	-				-1.1
1,824,110	-				-1.7
1,824,110	-				-2.4
1,824,110	-				-2.0
1,824,110	-				+0.0
1,824,114	+				-1.5
1,824,114	+				-0.9
1,824,114	+				-0.4
1,824,114	+				-0.2
1,824,120	-				-0.5
1,824,121	+				+0.7
1,824,139	-				-1.8
1,824,143	+				+0.5
1,824,149	-				+1.5
1,824,149	-				-2.2
1,824,151	-				-2.4
1,824,153	+				-0.8
1,824,156	-				-2.1
1,824,192	+				-1.1
1,824,196	+				-0.8
1,824,267	+		GFF1802	0.17	-0.2
1,824,286	+		GFF1802	0.19	-0.2
1,824,286	+		GFF1802	0.19	+1.2
1,824,293	+		GFF1802	0.20	-3.1
1,824,293	+		GFF1802	0.20	+0.6
1,824,293	+		GFF1802	0.20	-1.9
1,824,293	+		GFF1802	0.20	-0.7
1,824,294	-		GFF1802	0.20	+1.4
1,824,301	-		GFF1802	0.21	+0.9
1,824,301	-		GFF1802	0.21	-0.0
1,824,303	+		GFF1802	0.21	-0.5
1,824,306	-		GFF1802	0.21	-1.3
1,824,313	+		GFF1802	0.22	-1.7
1,824,314	+		GFF1802	0.22	-0.0
1,824,321	-		GFF1802	0.23	+0.0
1,824,375	-		GFF1802	0.29	-1.5
1,824,406	-		GFF1802	0.32	+1.1
1,824,409	+		GFF1802	0.32	-1.2
1,824,414	+		GFF1802	0.33	-0.0
1,824,448	-		GFF1802	0.37	-1.3
1,824,456	-		GFF1802	0.38	+0.2
1,824,461	-		GFF1802	0.38	+0.7
1,824,473	-		GFF1802	0.39	-1.9
1,824,485	-		GFF1802	0.41	-0.7
1,824,520	+		GFF1802	0.44	+0.2
1,824,520	+		GFF1802	0.44	-0.8
1,824,520	+		GFF1802	0.44	-1.9
1,824,528	-		GFF1802	0.45	+1.2
1,824,528	-		GFF1802	0.45	-0.2
1,824,528	-		GFF1802	0.45	-0.5
1,824,532	-		GFF1802	0.46	-0.8
1,824,553	-		GFF1802	0.48	+0.1
1,824,555	+		GFF1802	0.48	-0.6
1,824,567	+		GFF1802	0.49	-1.5
1,824,604	+		GFF1802	0.53	-0.4
1,824,607	-		GFF1802	0.54	-1.0
1,824,619	+		GFF1802	0.55	-2.0
1,824,631	-		GFF1802	0.56	-0.2
1,824,635	+		GFF1802	0.57	-0.3
1,824,635	+		GFF1802	0.57	+0.8
1,824,639	+		GFF1802	0.57	+0.4
1,824,639	+		GFF1802	0.57	+0.7
1,824,639	+		GFF1802	0.57	+0.3
1,824,642	-		GFF1802	0.57	-0.4
1,824,647	-		GFF1802	0.58	-0.2
1,824,647	-		GFF1802	0.58	-0.2
1,824,647	-		GFF1802	0.58	+0.4
1,824,668	+		GFF1802	0.60	-2.5
1,824,676	+		GFF1802	0.61	-0.1
1,824,689	+		GFF1802	0.62	+0.8
1,824,689	+		GFF1802	0.62	-2.7
1,824,697	-		GFF1802	0.63	+0.2
1,824,697	-		GFF1802	0.63	-1.3
1,824,697	-		GFF1802	0.63	-1.3
1,824,697	-		GFF1802	0.63	-0.8
1,824,699	+		GFF1802	0.64	-0.4
1,824,699	+		GFF1802	0.64	-0.7
1,824,703	+		GFF1802	0.64	+0.4
1,824,707	-		GFF1802	0.64	+0.4
1,824,707	-		GFF1802	0.64	-0.7
1,824,707	-		GFF1802	0.64	-1.2
1,824,707	-		GFF1802	0.64	-0.4
1,824,729	+		GFF1802	0.67	-1.5
1,824,729	+		GFF1802	0.67	+1.9
1,824,737	-		GFF1802	0.68	-0.2
1,824,737	-		GFF1802	0.68	-1.0
1,824,761	+		GFF1802	0.70	+0.0
1,824,770	+		GFF1802	0.71	+1.2
1,824,798	+		GFF1802	0.74	-2.4
1,824,814	+		GFF1802	0.76	-2.9
1,824,814	+		GFF1802	0.76	-2.0
1,824,822	-		GFF1802	0.77	-0.3
1,824,822	-		GFF1802	0.77	-0.7
1,824,829	-		GFF1802	0.77	+0.1
1,824,834	+		GFF1802	0.78	+1.1
1,824,839	+		GFF1802	0.79	-0.2
1,824,845	+		GFF1802	0.79	-0.5
1,824,845	+		GFF1802	0.79	-0.5
1,824,845	+		GFF1802	0.79	+0.2
1,824,845	+		GFF1802	0.79	-2.1
1,824,845	+		GFF1802	0.79	+0.1
1,824,845	+		GFF1802	0.79	-1.3
1,824,845	+		GFF1802	0.79	-1.3
1,824,848	-		GFF1802	0.80	-0.0
1,824,853	-		GFF1802	0.80	-0.3
1,824,853	-		GFF1802	0.80	-1.2
1,824,853	-		GFF1802	0.80	-0.1
1,824,853	-		GFF1802	0.80	-0.2
1,824,853	-		GFF1802	0.80	-0.8
1,824,853	-		GFF1802	0.80	-0.5
1,824,853	-		GFF1802	0.80	+0.7
1,824,853	-		GFF1802	0.80	-0.1
1,824,853	-		GFF1802	0.80	-0.2
1,824,853	-		GFF1802	0.80	-1.3
1,824,889	-		GFF1802	0.84	-0.3
1,824,891	+		GFF1802	0.84	-1.1
1,824,914	+		GFF1802	0.87	+0.7
1,824,923	-		GFF1802	0.88	-0.3
1,824,924	+		GFF1802	0.88	-1.2
1,824,955	-				+0.7
1,824,955	-				+0.0
1,824,957	+				-0.2
1,824,962	+				-0.3
1,824,962	+				+1.0
1,824,965	-				-0.0
1,824,990	-				-0.3
1,825,027	+				-0.6
1,825,027	+				+0.0
1,825,027	+				-0.5
1,825,027	+				-0.6
1,825,027	+				-1.7
1,825,039	+				-0.3
1,825,045	-				-1.3
1,825,079	+				+0.5
1,825,084	+				-1.6
1,825,107	+				-1.3
1,825,107	+				-0.4
1,825,107	+				-2.5
1,825,115	-				-1.2
1,825,117	-				+0.8
1,825,125	+				+1.2
1,825,138	+				+0.2
1,825,146	-				+0.2
1,825,188	+				+0.6
1,825,235	+				-0.2
1,825,235	+				-1.1
1,825,240	+				-1.5
1,825,243	-				-0.8
1,825,245	+				-0.2
1,825,245	+				+0.7
1,825,245	+				-0.2
1,825,246	+				+0.0
1,825,253	-				-1.1
1,825,253	-				-1.3
1,825,254	-				-0.2
1,825,279	+				-0.7
1,825,287	-				-1.3
1,825,310	-				+0.3
1,825,320	+				-0.8
1,825,328	-				+0.2
1,825,349	+				-2.5
1,825,354	+				+1.3
1,825,354	+				+0.3
1,825,362	-				-0.5
1,825,362	-				-1.5
1,825,395	-				-1.6
1,825,419	+				-0.3
1,825,429	-				+1.6
1,825,439	+				+0.7
1,825,441	+				+0.0
1,825,449	-				-1.1
1,825,449	-				-1.7
1,825,483	+				-0.6
1,825,483	+				-0.7
1,825,483	+				+0.0
1,825,483	+				-1.3
1,825,491	-				-0.8
1,825,491	-				-1.8
1,825,491	-				+0.5
1,825,491	-				-0.2
1,825,518	-				+0.8
1,825,518	-				-0.5
1,825,520	-				+0.5
1,825,534	+				-1.7
1,825,534	+				-0.3
1,825,577	-				-0.8
1,825,619	+		GFF1803	0.14	-0.6
1,825,619	+		GFF1803	0.14	+0.4
1,825,619	+		GFF1803	0.14	+0.1
1,825,619	+		GFF1803	0.14	-1.3
1,825,619	+		GFF1803	0.14	+0.4
1,825,624	+		GFF1803	0.16	+0.1
1,825,624	+		GFF1803	0.16	+0.5
1,825,624	+		GFF1803	0.16	-0.0
1,825,624	+		GFF1803	0.16	-0.0
1,825,624	+		GFF1803	0.16	-0.3
1,825,624	+		GFF1803	0.16	+0.7
1,825,624	+		GFF1803	0.16	+0.0
1,825,624	+		GFF1803	0.16	-1.3
1,825,627	-		GFF1803	0.17	-0.4
1,825,627	-		GFF1803	0.17	+0.1
1,825,632	-		GFF1803	0.19	+0.2
1,825,654	-		GFF1803	0.26	-0.5
1,825,677	+		GFF1803	0.34	+0.8
1,825,742	+		GFF1803	0.57	+0.3
1,825,742	+		GFF1803	0.57	+0.2
1,825,742	+		GFF1803	0.57	-0.9
1,825,742	+		GFF1803	0.57	-1.6
1,825,750	-		GFF1803	0.59	+0.5
1,825,750	-		GFF1803	0.59	-0.5
1,825,750	-		GFF1803	0.59	-0.5
1,825,822	-		GFF1803	0.84	-1.7
1,825,851	+				-1.3
1,825,851	-				+0.3
1,825,856	+				-1.6
1,825,856	+				-0.4
1,825,859	-				-1.8
1,825,861	+				+1.1
1,825,869	-				-0.6
1,825,882	+				+0.4
1,825,882	+				-1.8
1,825,882	+				-1.1
1,825,896	-				-1.8
1,825,901	-				-0.1
1,825,907	+				-1.6
1,825,909	-				-0.5
1,825,912	+				-0.3
1,825,915	-				+0.6
1,825,915	-				+0.2
1,825,915	-				+1.4
1,825,945	-				-1.1
1,825,981	-				-0.6
1,825,998	-				+0.6
1,826,001	+				-0.4
1,826,012	-				-0.5
1,826,030	-				+0.1
1,826,031	+				-0.5