Strain Fitness in Sphingobium sp. HT1-2 around GFF1735

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,760,546	-				-0.9
1,760,551	+				-0.6
1,760,557	-				+0.1
1,760,583	-				-2.2
1,760,627	+				-0.2
1,760,627	+				-0.9
1,760,627	-				-0.1
1,760,635	-				+0.1
1,760,723	-				-0.1
1,760,729	+				+0.1
1,760,729	+				-0.1
1,760,729	+				+1.0
1,760,735	+		GFF1734	0.10	-1.0
1,760,737	-		GFF1734	0.11	-1.1
1,760,737	-		GFF1734	0.11	-0.7
1,760,737	-		GFF1734	0.11	+0.8
1,760,737	-		GFF1734	0.11	-0.3
1,760,737	-		GFF1734	0.11	+1.4
1,760,740	+		GFF1734	0.11	+0.4
1,760,747	-		GFF1734	0.12	-1.7
1,760,748	-		GFF1734	0.12	-1.0
1,760,752	-		GFF1734	0.12	-0.7
1,760,752	-		GFF1734	0.12	-0.1
1,760,775	+		GFF1734	0.15	+1.7
1,760,783	+		GFF1734	0.16	+0.2
1,760,791	-		GFF1734	0.17	-0.2
1,760,793	+		GFF1734	0.18	+0.7
1,760,802	+		GFF1734	0.19	-2.2
1,760,866	+		GFF1734	0.27	+0.6
1,760,879	-		GFF1734	0.28	+0.4
1,760,884	-		GFF1734	0.29	-1.7
1,760,897	+		GFF1734	0.31	+0.8
1,760,897	+		GFF1734	0.31	-1.4
1,760,897	+		GFF1734	0.31	-0.1
1,760,897	+		GFF1734	0.31	-1.6
1,760,897	+		GFF1734	0.31	+0.4
1,760,897	+		GFF1734	0.31	+0.1
1,760,897	+		GFF1734	0.31	-1.1
1,760,897	+		GFF1734	0.31	-1.4
1,760,897	+		GFF1734	0.31	-0.0
1,760,897	+		GFF1734	0.31	+0.9
1,760,897	+		GFF1734	0.31	-2.6
1,760,905	-		GFF1734	0.32	-0.6
1,760,905	-		GFF1734	0.32	+0.9
1,760,905	-		GFF1734	0.32	-0.4
1,760,905	-		GFF1734	0.32	+0.2
1,760,905	-		GFF1734	0.32	+1.1
1,760,917	-		GFF1734	0.33	-1.1
1,760,923	+		GFF1734	0.34	-1.1
1,760,923	+		GFF1734	0.34	-0.2
1,760,926	-		GFF1734	0.34	-0.1
1,760,931	-		GFF1734	0.35	-2.6
1,760,935	+		GFF1734	0.35	+0.2
1,760,936	-		GFF1734	0.35	-0.9
1,760,940	+		GFF1734	0.36	-0.2
1,760,948	-		GFF1734	0.37	+0.7
1,760,952	+		GFF1734	0.37	-0.7
1,760,998	+		GFF1734	0.43	-1.3
1,760,998	+		GFF1734	0.43	+0.0
1,760,998	+		GFF1734	0.43	-0.6
1,760,998	+		GFF1734	0.43	+0.4
1,760,998	+		GFF1734	0.43	+0.1
1,760,998	+		GFF1734	0.43	+0.4
1,760,998	+		GFF1734	0.43	+0.7
1,760,998	+		GFF1734	0.43	-0.8
1,760,998	+		GFF1734	0.43	+1.0
1,761,001	-		GFF1734	0.44	+0.2
1,761,003	+		GFF1734	0.44	-0.4
1,761,006	-		GFF1734	0.44	-1.5
1,761,006	-		GFF1734	0.44	-0.9
1,761,006	-		GFF1734	0.44	-2.0
1,761,006	-		GFF1734	0.44	+0.7
1,761,014	+		GFF1734	0.45	+0.6
1,761,014	+		GFF1734	0.45	+0.4
1,761,014	+		GFF1734	0.45	+1.2
1,761,016	-		GFF1734	0.45	-0.3
1,761,016	-		GFF1734	0.45	-1.0
1,761,022	-		GFF1734	0.46	-0.5
1,761,022	-		GFF1734	0.46	+0.4
1,761,022	-		GFF1734	0.46	-2.1
1,761,022	-		GFF1734	0.46	-0.7
1,761,022	-		GFF1734	0.46	+0.3
1,761,022	-		GFF1734	0.46	-0.3
1,761,022	-		GFF1734	0.46	-1.0
1,761,022	-		GFF1734	0.46	+0.4
1,761,022	-		GFF1734	0.46	-0.7
1,761,024	+		GFF1734	0.46	-1.3
1,761,024	-		GFF1734	0.46	+0.7
1,761,026	+		GFF1734	0.47	-1.6
1,761,026	+		GFF1734	0.47	-0.6
1,761,026	-		GFF1734	0.47	-1.6
1,761,026	-		GFF1734	0.47	-0.1
1,761,029	-		GFF1734	0.47	-1.3
1,761,034	-		GFF1734	0.48	-1.3
1,761,036	+		GFF1734	0.48	-1.4
1,761,036	+		GFF1734	0.48	-1.2
1,761,036	+		GFF1734	0.48	+1.1
1,761,036	+		GFF1734	0.48	-0.9
1,761,036	+		GFF1734	0.48	-0.7
1,761,039	-		GFF1734	0.48	-0.1
1,761,044	-		GFF1734	0.49	-0.1
1,761,044	-		GFF1734	0.49	-0.8
1,761,044	-		GFF1734	0.49	+0.1
1,761,056	+		GFF1734	0.51	+0.6
1,761,075	+		GFF1734	0.53	-2.2
1,761,075	+		GFF1734	0.53	+0.4
1,761,077	-		GFF1734	0.53	+0.2
1,761,095	+		GFF1734	0.55	-0.1
1,761,101	+		GFF1734	0.56	-0.5
1,761,106	+		GFF1734	0.57	+0.1
1,761,139	+		GFF1734	0.61	+0.2
1,761,140	-		GFF1734	0.61	-0.3
1,761,142	+		GFF1734	0.61	-1.3
1,761,150	-		GFF1734	0.62	+0.4
1,761,150	-		GFF1734	0.62	-0.3
1,761,160	+		GFF1734	0.64	-0.9
1,761,170	+		GFF1734	0.65	+0.2
1,761,170	+		GFF1734	0.65	-0.4
1,761,175	+		GFF1734	0.65	+0.7
1,761,175	+		GFF1734	0.65	-0.0
1,761,175	+		GFF1734	0.65	-2.3
1,761,178	-		GFF1734	0.66	-0.2
1,761,183	-		GFF1734	0.66	-1.3
1,761,183	-		GFF1734	0.66	-2.7
1,761,183	-		GFF1734	0.66	-1.7
1,761,184	-		GFF1734	0.67	-1.1
1,761,193	+		GFF1734	0.68	+0.9
1,761,205	-		GFF1734	0.69	-1.2
1,761,205	-		GFF1734	0.69	+0.7
1,761,209	+		GFF1734	0.70	-0.8
1,761,263	-		GFF1734	0.76	+0.3
1,761,264	+		GFF1734	0.77	+0.2
1,761,264	+		GFF1734	0.77	-1.0
1,761,264	+		GFF1734	0.77	-1.7
1,761,272	-		GFF1734	0.78	-0.7
1,761,277	-		GFF1734	0.78	-0.6
1,761,308	+		GFF1734	0.82	+0.6
1,761,308	+		GFF1734	0.82	-1.3
1,761,308	+		GFF1734	0.82	-1.2
1,761,308	+		GFF1734	0.82	-1.5
1,761,308	+		GFF1734	0.82	-1.2
1,761,308	+		GFF1734	0.82	-0.7
1,761,308	+		GFF1734	0.82	+1.5
1,761,308	+		GFF1734	0.82	-1.2
1,761,308	+		GFF1734	0.82	-0.7
1,761,308	+		GFF1734	0.82	-0.3
1,761,308	+		GFF1734	0.82	+0.1
1,761,308	+		GFF1734	0.82	-0.6
1,761,314	+		GFF1734	0.83	+0.3
1,761,314	+		GFF1734	0.83	+0.3
1,761,316	-		GFF1734	0.83	-2.3
1,761,316	-		GFF1734	0.83	-1.6
1,761,316	-		GFF1734	0.83	+0.3
1,761,316	-		GFF1734	0.83	+0.3
1,761,316	-		GFF1734	0.83	+0.8
1,761,316	-		GFF1734	0.83	-0.8
1,761,316	-		GFF1734	0.83	-0.3
1,761,316	-		GFF1734	0.83	+0.4
1,761,322	-		GFF1734	0.84	+0.2
1,761,322	-		GFF1734	0.84	+1.1
1,761,333	+		GFF1734	0.85	-1.2
1,761,341	-		GFF1734	0.86	+0.4
1,761,346	+		GFF1734	0.87	+0.8
1,761,359	+		GFF1734	0.88	-1.6
1,761,359	+		GFF1734	0.88	+0.9
1,761,359	+		GFF1734	0.88	+0.3
1,761,384	-				+0.3
1,761,403	+				+0.8
1,761,404	-				+1.3
1,761,404	-				-1.0
1,761,404	-				-1.3
1,761,405	+				-0.1
1,761,405	+				+0.8
1,761,410	+				-0.3
1,761,410	+				-3.1
1,761,410	+				+0.6
1,761,410	+				-2.6
1,761,410	+				-1.2
1,761,413	-				-0.2
1,761,413	-				-0.5
1,761,413	-				-0.3
1,761,413	-				-1.6
1,761,418	-				-1.4
1,761,418	-				-0.1
1,761,418	-				+0.9
1,761,418	-				-0.5
1,761,418	-				+0.9
1,761,454	+				+0.8
1,761,455	+				+1.0
1,761,461	+				+0.0
1,761,475	-				-3.0
1,761,484	+				+0.6
1,761,501	+				+1.6
1,761,504	-				-0.2
1,761,506	+				-0.2
1,761,506	+				-0.0
1,761,506	+				-0.8
1,761,506	+				+0.4
1,761,506	+				-0.6
1,761,509	-				-1.3
1,761,509	-				-1.9
1,761,509	-				-0.4
1,761,514	-				-0.1
1,761,533	-				-0.6
1,761,547	+				+0.4
1,761,550	-				-0.2
1,761,555	-				-1.2
1,761,598	+				+0.2
1,761,606	-				+0.5
1,761,671	-		GFF1735	0.15	+1.0
1,761,689	+		GFF1735	0.16	-0.2
1,761,703	-		GFF1735	0.17	-1.4
1,761,723	+		GFF1735	0.19	-1.2
1,761,723	+		GFF1735	0.19	-1.3
1,761,728	+		GFF1735	0.19	+0.7
1,761,728	+		GFF1735	0.19	+0.8
1,761,733	+		GFF1735	0.20	+0.4
1,761,733	+		GFF1735	0.20	+1.6
1,761,733	+		GFF1735	0.20	+0.7
1,761,733	+		GFF1735	0.20	+0.8
1,761,733	+		GFF1735	0.20	-2.1
1,761,733	+		GFF1735	0.20	+0.1
1,761,733	+		GFF1735	0.20	+1.8
1,761,733	+		GFF1735	0.20	-0.7
1,761,733	+		GFF1735	0.20	-0.5
1,761,733	+		GFF1735	0.20	+0.3
1,761,733	+		GFF1735	0.20	-1.3
1,761,734	+		GFF1735	0.20	-0.7
1,761,734	+		GFF1735	0.20	-0.9
1,761,736	-		GFF1735	0.20	+1.5
1,761,741	-		GFF1735	0.20	-0.8
1,761,741	-		GFF1735	0.20	+0.5
1,761,741	-		GFF1735	0.20	-2.0
1,761,741	-		GFF1735	0.20	-0.9
1,761,741	-		GFF1735	0.20	+0.6
1,761,741	-		GFF1735	0.20	-0.7
1,761,741	-		GFF1735	0.20	+0.7
1,761,741	-		GFF1735	0.20	+0.7
1,761,741	-		GFF1735	0.20	+0.1
1,761,741	-		GFF1735	0.20	-2.3
1,761,741	-		GFF1735	0.20	-0.6
1,761,741	-		GFF1735	0.20	-1.2
1,761,746	-		GFF1735	0.21	-2.0
1,761,754	+		GFF1735	0.21	-1.4
1,761,754	+		GFF1735	0.21	-0.1
1,761,754	+		GFF1735	0.21	-0.2
1,761,763	-		GFF1735	0.22	+0.6
1,761,763	-		GFF1735	0.22	+0.7
1,761,763	-		GFF1735	0.22	-1.8
1,761,795	+		GFF1735	0.24	+0.5
1,761,795	+		GFF1735	0.24	-0.9
1,761,818	-		GFF1735	0.26	+1.3
1,761,824	+		GFF1735	0.27	+0.2
1,761,824	+		GFF1735	0.27	-0.2
1,761,824	+		GFF1735	0.27	-0.4
1,761,827	-		GFF1735	0.27	-0.2
1,761,875	+		GFF1735	0.31	-1.6
1,761,904	-		GFF1735	0.33	+1.0
1,761,919	+		GFF1735	0.34	-0.6
1,761,919	+		GFF1735	0.34	-0.3
1,761,919	+		GFF1735	0.34	-0.1
1,761,922	-		GFF1735	0.34	+0.5
1,761,927	-		GFF1735	0.35	+1.8
1,761,927	-		GFF1735	0.35	-0.1
1,761,927	-		GFF1735	0.35	-1.6
1,761,927	-		GFF1735	0.35	+0.9
1,761,927	-		GFF1735	0.35	+0.7
1,761,927	-		GFF1735	0.35	+0.3
1,761,927	-		GFF1735	0.35	+0.5
1,761,954	-		GFF1735	0.37	-0.3
1,761,955	-		GFF1735	0.37	-1.7
1,762,003	-		GFF1735	0.41	+0.9
1,762,030	+		GFF1735	0.43	+0.4
1,762,039	-		GFF1735	0.44	-0.7
1,762,102	-		GFF1735	0.49	+0.8
1,762,112	-		GFF1735	0.49	+0.3
1,762,112	-		GFF1735	0.49	-2.7
1,762,115	-		GFF1735	0.50	+0.5
1,762,120	-		GFF1735	0.50	-0.6
1,762,122	+		GFF1735	0.50	+0.7
1,762,125	-		GFF1735	0.50	-0.8
1,762,130	-		GFF1735	0.51	-0.5
1,762,175	+		GFF1735	0.54	+0.9
1,762,183	-		GFF1735	0.55	+0.2
1,762,183	-		GFF1735	0.55	-2.4
1,762,208	+		GFF1735	0.57	+0.4
1,762,208	+		GFF1735	0.57	-0.4
1,762,216	-		GFF1735	0.57	-2.2
1,762,222	-		GFF1735	0.58	-1.3
1,762,248	+		GFF1735	0.60	+1.1
1,762,256	-		GFF1735	0.61	-0.5
1,762,265	+		GFF1735	0.61	-1.6
1,762,265	+		GFF1735	0.61	-0.3
1,762,266	+		GFF1735	0.61	-1.6
1,762,266	+		GFF1735	0.61	+0.3
1,762,268	-		GFF1735	0.62	-1.6
1,762,273	-		GFF1735	0.62	-0.4
1,762,273	-		GFF1735	0.62	-0.2
1,762,274	+		GFF1735	0.62	-1.3
1,762,274	-		GFF1735	0.62	-1.4
1,762,274	-		GFF1735	0.62	-1.3
1,762,274	-		GFF1735	0.62	-0.4
1,762,276	+		GFF1735	0.62	+0.1
1,762,281	+		GFF1735	0.63	+1.0
1,762,284	-		GFF1735	0.63	-2.4
1,762,302	+		GFF1735	0.64	+1.6
1,762,319	+		GFF1735	0.65	-0.3
1,762,319	+		GFF1735	0.65	+0.3
1,762,319	+		GFF1735	0.65	+0.5
1,762,319	+		GFF1735	0.65	-0.0
1,762,319	+		GFF1735	0.65	-0.9
1,762,321	+		GFF1735	0.66	-1.7
1,762,322	-		GFF1735	0.66	-0.9
1,762,322	-		GFF1735	0.66	+0.2
1,762,324	+		GFF1735	0.66	-1.2
1,762,327	-		GFF1735	0.66	+0.1
1,762,327	-		GFF1735	0.66	+1.7
1,762,327	-		GFF1735	0.66	-0.2
1,762,327	-		GFF1735	0.66	+0.4
1,762,327	-		GFF1735	0.66	+0.3
1,762,329	-		GFF1735	0.66	-1.3
1,762,332	-		GFF1735	0.67	-0.8
1,762,360	+		GFF1735	0.69	+0.1
1,762,360	+		GFF1735	0.69	+1.1
1,762,367	+		GFF1735	0.69	+0.2
1,762,368	-		GFF1735	0.69	-0.2
1,762,368	-		GFF1735	0.69	-1.6
1,762,368	-		GFF1735	0.69	-0.2
1,762,371	+		GFF1735	0.70	-0.7
1,762,386	-		GFF1735	0.71	+0.7
1,762,386	-		GFF1735	0.71	+0.1
1,762,399	+		GFF1735	0.72	-0.2
1,762,408	+		GFF1735	0.72	+1.4
1,762,408	+		GFF1735	0.72	+0.2
1,762,411	-		GFF1735	0.73	-0.3
1,762,411	-		GFF1735	0.73	-0.6
1,762,413	+		GFF1735	0.73	-1.3
1,762,416	-		GFF1735	0.73	+0.2
1,762,432	+		GFF1735	0.74	-0.8
1,762,437	+		GFF1735	0.75	-0.4
1,762,437	+		GFF1735	0.75	-0.6
1,762,462	+		GFF1735	0.77	-0.9
1,762,467	+		GFF1735	0.77	-0.2
1,762,510	-		GFF1735	0.80	+1.7
1,762,510	-		GFF1735	0.80	-1.5
1,762,522	+		GFF1735	0.81	+1.9
1,762,522	+		GFF1735	0.81	-0.7
1,762,522	+		GFF1735	0.81	+0.8
1,762,522	+		GFF1735	0.81	+0.8
1,762,522	+		GFF1735	0.81	+0.5
1,762,522	+		GFF1735	0.81	-1.3
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