Strain Fitness in Sphingobium sp. HT1-2 around GFF1722

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,745,235	+		GFF1721	0.62	-0.1
1,745,250	+		GFF1721	0.63	-2.7
1,745,263	+		GFF1721	0.63	-1.5
1,745,268	+		GFF1721	0.64	-0.3
1,745,268	+		GFF1721	0.64	-0.3
1,745,268	+		GFF1721	0.64	+1.5
1,745,268	+		GFF1721	0.64	+0.2
1,745,268	+		GFF1721	0.64	-2.7
1,745,268	+		GFF1721	0.64	+0.6
1,745,268	+		GFF1721	0.64	+0.7
1,745,268	+		GFF1721	0.64	-1.8
1,745,268	+		GFF1721	0.64	-1.8
1,745,268	+		GFF1721	0.64	-0.9
1,745,268	+		GFF1721	0.64	+0.4
1,745,268	+		GFF1721	0.64	-1.1
1,745,271	-		GFF1721	0.64	-0.8
1,745,276	-		GFF1721	0.64	-0.7
1,745,276	-		GFF1721	0.64	+0.4
1,745,276	-		GFF1721	0.64	+0.1
1,745,276	-		GFF1721	0.64	-0.6
1,745,276	-		GFF1721	0.64	-0.9
1,745,276	-		GFF1721	0.64	-0.3
1,745,276	-		GFF1721	0.64	+0.2
1,745,276	-		GFF1721	0.64	-1.5
1,745,276	-		GFF1721	0.64	-0.6
1,745,276	-		GFF1721	0.64	-2.5
1,745,276	-		GFF1721	0.64	+0.3
1,745,276	-		GFF1721	0.64	+0.7
1,745,283	+		GFF1721	0.65	+0.4
1,745,326	+		GFF1721	0.67	+0.8
1,745,328	+		GFF1721	0.67	+0.0
1,745,331	-		GFF1721	0.68	-1.8
1,745,339	-		GFF1721	0.68	-0.2
1,745,349	-		GFF1721	0.69	+0.5
1,745,388	+		GFF1721	0.71	+0.2
1,745,389	+		GFF1721	0.71	-0.6
1,745,396	-		GFF1721	0.72	+0.2
1,745,396	-		GFF1721	0.72	-2.5
1,745,402	+		GFF1721	0.72	-0.1
1,745,404	-		GFF1721	0.72	+0.5
1,745,410	-		GFF1721	0.73	+0.3
1,745,436	-		GFF1721	0.74	+0.7
1,745,438	-		GFF1721	0.74	+0.1
1,745,440	-		GFF1721	0.74	-0.3
1,745,441	-		GFF1721	0.74	+0.8
1,745,465	-		GFF1721	0.76	-0.2
1,745,522	+		GFF1721	0.80	-1.3
1,745,522	+		GFF1721	0.80	-0.1
1,745,530	-		GFF1721	0.80	+0.5
1,745,530	-		GFF1721	0.80	-0.8
1,745,547	+		GFF1721	0.81	-1.5
1,745,547	+		GFF1721	0.81	+0.2
1,745,547	-		GFF1721	0.81	+0.2
1,745,553	-		GFF1721	0.81	-1.9
1,745,555	-		GFF1721	0.82	-2.3
1,745,560	-		GFF1721	0.82	+0.0
1,745,565	-		GFF1721	0.82	-0.6
1,745,569	+		GFF1721	0.82	-0.7
1,745,577	-		GFF1721	0.83	-1.4
1,745,578	-		GFF1721	0.83	+0.1
1,745,582	-		GFF1721	0.83	+0.7
1,745,588	-		GFF1721	0.84	-2.1
1,745,641	+		GFF1721	0.87	-0.5
1,745,680	+		GFF1721	0.89	+0.8
1,745,716	+				-1.0
1,745,716	-				+1.2
1,745,717	+				-0.5
1,745,737	-				-0.3
1,745,751	-				-2.2
1,745,755	+				+1.1
1,745,771	+				-0.1
1,745,778	+				+0.5
1,745,779	-				-1.1
1,745,779	-				+0.3
1,745,779	-				-1.8
1,745,783	+				+1.5
1,745,793	+				-0.4
1,745,809	+				-0.6
1,745,809	+				+0.4
1,745,817	+				-0.7
1,745,830	-				+0.4
1,745,853	-				-0.1
1,745,878	-				+0.1
1,745,886	+				+0.9
1,745,896	-				+0.7
1,745,896	-				-0.4
1,745,907	+				-0.3
1,745,933	-				+0.9
1,745,947	+				+0.5
1,745,955	-				-0.9
1,745,985	+				+0.0
1,745,985	+				-1.0
1,745,993	-				-1.8
1,746,020	-				-0.8
1,746,031	-				+0.2
1,746,062	-				-2.6
1,746,067	-				+0.5
1,746,076	+				+0.8
1,746,086	+				+0.2
1,746,092	+				-0.9
1,746,092	+				-0.4
1,746,100	-				+0.0
1,746,100	-				-1.1
1,746,102	+				-0.6
1,746,110	-				+0.8
1,746,110	-				+0.1
1,746,141	+				-0.9
1,746,223	+				-0.6
1,746,223	+				+1.1
1,746,223	+				+0.2
1,746,231	-				-0.3
1,746,237	-				-1.9
1,746,253	-				-1.8
1,746,263	+				-2.3
1,746,265	+				-1.2
1,746,296	+				-0.3
1,746,296	+				+1.4
1,746,309	+				-0.3
1,746,338	-				-1.7
1,746,338	-				-0.1
1,746,346	-				-1.3
1,746,346	-				-1.0
1,746,353	+				+0.7
1,746,363	+				+0.5
1,746,382	+		GFF1722	0.10	-1.7
1,746,399	+		GFF1722	0.12	-1.6
1,746,404	+		GFF1722	0.12	-1.2
1,746,409	+		GFF1722	0.12	-1.1
1,746,433	+		GFF1722	0.14	+0.8
1,746,455	-		GFF1722	0.15	-1.9
1,746,456	+		GFF1722	0.15	-3.3
1,746,456	+		GFF1722	0.15	-0.9
1,746,456	+		GFF1722	0.15	-0.3
1,746,464	-		GFF1722	0.16	-0.6
1,746,469	-		GFF1722	0.16	+0.3
1,746,474	+		GFF1722	0.17	-1.7
1,746,491	-		GFF1722	0.18	+0.4
1,746,494	+		GFF1722	0.18	-0.4
1,746,499	+		GFF1722	0.18	+0.1
1,746,499	+		GFF1722	0.18	-1.8
1,746,501	-		GFF1722	0.18	+1.6
1,746,502	-		GFF1722	0.18	-0.8
1,746,502	-		GFF1722	0.18	-1.3
1,746,512	-		GFF1722	0.19	-0.7
1,746,516	+		GFF1722	0.19	+0.2
1,746,516	+		GFF1722	0.19	+0.8
1,746,516	+		GFF1722	0.19	-2.1
1,746,524	-		GFF1722	0.20	+1.2
1,746,524	-		GFF1722	0.20	-0.2
1,746,524	-		GFF1722	0.20	+0.4
1,746,524	-		GFF1722	0.20	-1.5
1,746,536	+		GFF1722	0.21	+0.4
1,746,549	+		GFF1722	0.22	-0.9
1,746,551	+		GFF1722	0.22	-0.2
1,746,551	+		GFF1722	0.22	-2.2
1,746,551	+		GFF1722	0.22	-0.5
1,746,551	+		GFF1722	0.22	+0.5
1,746,551	+		GFF1722	0.22	-0.6
1,746,551	+		GFF1722	0.22	-0.1
1,746,551	+		GFF1722	0.22	-0.7
1,746,559	-		GFF1722	0.22	-0.8
1,746,559	-		GFF1722	0.22	+0.1
1,746,559	-		GFF1722	0.22	-1.1
1,746,559	-		GFF1722	0.22	-1.6
1,746,559	-		GFF1722	0.22	+0.0
1,746,559	-		GFF1722	0.22	-0.4
1,746,559	-		GFF1722	0.22	-0.3
1,746,559	-		GFF1722	0.22	+0.5
1,746,559	-		GFF1722	0.22	+0.9
1,746,559	-		GFF1722	0.22	-0.9
1,746,578	+		GFF1722	0.24	-2.6
1,746,578	+		GFF1722	0.24	-1.0
1,746,586	-		GFF1722	0.24	+0.4
1,746,586	-		GFF1722	0.24	+0.3
1,746,629	-		GFF1722	0.27	-1.7
1,746,649	+		GFF1722	0.28	-0.5
1,746,650	-		GFF1722	0.28	-1.9
1,746,657	+		GFF1722	0.29	+0.1
1,746,657	+		GFF1722	0.29	-0.5
1,746,657	-		GFF1722	0.29	+0.4
1,746,665	-		GFF1722	0.29	-0.0
1,746,665	-		GFF1722	0.29	-0.7
1,746,665	-		GFF1722	0.29	+0.4
1,746,665	-		GFF1722	0.29	+0.4
1,746,665	-		GFF1722	0.29	+1.0
1,746,665	-		GFF1722	0.29	-0.8
1,746,665	-		GFF1722	0.29	-0.8
1,746,665	-		GFF1722	0.29	-0.3
1,746,665	-		GFF1722	0.29	-0.3
1,746,665	-		GFF1722	0.29	-0.2
1,746,665	-		GFF1722	0.29	-2.0
1,746,665	-		GFF1722	0.29	+0.4
1,746,671	-		GFF1722	0.30	+0.4
1,746,706	-		GFF1722	0.32	-0.6
1,746,723	+		GFF1722	0.33	+0.7
1,746,723	+		GFF1722	0.33	-1.1
1,746,723	+		GFF1722	0.33	-0.3
1,746,731	-		GFF1722	0.34	-0.7
1,746,783	+		GFF1722	0.37	-0.7
1,746,787	+		GFF1722	0.38	-0.8
1,746,794	+		GFF1722	0.38	+0.7
1,746,794	+		GFF1722	0.38	-0.6
1,746,795	-		GFF1722	0.38	-0.0
1,746,795	-		GFF1722	0.38	-1.6
1,746,807	-		GFF1722	0.39	-0.7
1,746,960	+		GFF1722	0.49	-1.5
1,746,960	+		GFF1722	0.49	+0.7
1,746,960	+		GFF1722	0.49	-0.1
1,746,960	+		GFF1722	0.49	+0.5
1,746,968	-		GFF1722	0.50	-0.1
1,746,982	+		GFF1722	0.51	-0.8
1,746,986	-		GFF1722	0.51	-1.0
1,747,000	-		GFF1722	0.52	-0.6
1,747,002	+		GFF1722	0.52	+1.1
1,747,005	-		GFF1722	0.52	+0.6
1,747,024	-		GFF1722	0.53	-0.2
1,747,024	-		GFF1722	0.53	+0.7
1,747,052	+		GFF1722	0.55	+1.2
1,747,066	-		GFF1722	0.56	+0.2
1,747,076	+		GFF1722	0.57	+0.2
1,747,080	+		GFF1722	0.57	+0.2
1,747,083	-		GFF1722	0.57	+0.2
1,747,099	+		GFF1722	0.58	+1.3
1,747,107	-		GFF1722	0.59	+0.2
1,747,107	-		GFF1722	0.59	-0.1
1,747,113	-		GFF1722	0.59	-2.2
1,747,131	+		GFF1722	0.61	+1.2
1,747,139	-		GFF1722	0.61	+0.9
1,747,139	-		GFF1722	0.61	-1.8
1,747,140	+		GFF1722	0.61	-0.5
1,747,170	+		GFF1722	0.63	+1.2
1,747,170	+		GFF1722	0.63	+0.7
1,747,170	+		GFF1722	0.63	-0.0
1,747,178	-		GFF1722	0.64	+1.7
1,747,186	-		GFF1722	0.64	-2.2
1,747,188	+		GFF1722	0.64	+0.6
1,747,188	+		GFF1722	0.64	+0.2
1,747,205	+		GFF1722	0.66	+0.6
1,747,213	-		GFF1722	0.66	-0.5
1,747,219	-		GFF1722	0.66	-0.1
1,747,223	+		GFF1722	0.67	-0.1
1,747,223	-		GFF1722	0.67	+0.1
1,747,231	-		GFF1722	0.67	-1.2
1,747,231	-		GFF1722	0.67	-0.5
1,747,233	+		GFF1722	0.67	+1.1
1,747,236	-		GFF1722	0.68	+0.1
1,747,251	-		GFF1722	0.69	-0.4
1,747,251	-		GFF1722	0.69	-3.0
1,747,258	+		GFF1722	0.69	+1.4
1,747,261	-		GFF1722	0.69	-0.8
1,747,263	+		GFF1722	0.69	-0.4
1,747,263	+		GFF1722	0.69	-1.3
1,747,263	+		GFF1722	0.69	+0.1
1,747,263	+		GFF1722	0.69	+0.1
1,747,271	-		GFF1722	0.70	+0.1
1,747,271	-		GFF1722	0.70	-1.0
1,747,271	-		GFF1722	0.70	-0.0
1,747,282	+		GFF1722	0.71	-0.5
1,747,297	+		GFF1722	0.72	-0.2
1,747,299	-		GFF1722	0.72	+1.0
1,747,300	-		GFF1722	0.72	-0.6
1,747,311	-		GFF1722	0.73	-0.6
1,747,311	-		GFF1722	0.73	-1.2
1,747,316	+		GFF1722	0.73	+0.7
1,747,324	-		GFF1722	0.73	-0.4
1,747,324	-		GFF1722	0.73	-1.5
1,747,326	+		GFF1722	0.74	-0.7
1,747,393	+		GFF1722	0.78	-0.5
1,747,398	+		GFF1722	0.78	-1.0
1,747,406	-		GFF1722	0.79	+0.3
1,747,406	-		GFF1722	0.79	+0.7
1,747,406	-		GFF1722	0.79	+1.6
1,747,406	-		GFF1722	0.79	+0.0
1,747,406	-		GFF1722	0.79	+1.8
1,747,406	-		GFF1722	0.79	-0.3
1,747,406	-		GFF1722	0.79	+0.0
1,747,416	-		GFF1722	0.80	+0.7
1,747,416	-		GFF1722	0.80	+0.1
1,747,418	+		GFF1722	0.80	-0.8
1,747,418	+		GFF1722	0.80	+1.0
1,747,418	+		GFF1722	0.80	+1.2
1,747,426	-		GFF1722	0.80	+0.1
1,747,434	+		GFF1722	0.81	+0.7
1,747,434	+		GFF1722	0.81	-1.1
1,747,436	-		GFF1722	0.81	-0.1
1,747,436	-		GFF1722	0.81	+0.1
1,747,445	+		GFF1722	0.82	-0.1
1,747,455	+		GFF1722	0.82	-2.5
1,747,475	+		GFF1722	0.84	+1.0
1,747,488	+		GFF1722	0.84	+0.2
1,747,496	+		GFF1722	0.85	-1.7
1,747,496	-		GFF1722	0.85	-0.8
1,747,498	-		GFF1722	0.85	-0.7
1,747,504	-		GFF1722	0.86	-0.8
1,747,518	-		GFF1722	0.86	-1.1
1,747,523	-		GFF1722	0.87	+0.7
1,747,523	-		GFF1722	0.87	+0.2
1,747,525	+		GFF1722	0.87	-1.3
1,747,533	+		GFF1722	0.87	-1.5
1,747,533	+		GFF1722	0.87	+0.2
1,747,542	+		GFF1722	0.88	-0.7
1,747,550	-		GFF1722	0.89	-0.1
1,747,555	+		GFF1722	0.89	-2.9
1,747,561	-		GFF1722	0.89	+0.1
1,747,561	-		GFF1722	0.89	+0.5
1,747,569	-		GFF1722	0.90	-1.7
1,747,571	+				+0.6
1,747,589	+				-1.1
1,747,589	+				-0.7
1,747,597	-				-0.4
1,747,609	+				+1.1
1,747,615	+				-0.5
1,747,615	+				+0.4
1,747,617	-				+1.0
1,747,617	-				-0.3
1,747,617	-				-2.1
1,747,617	-				-1.2
1,747,623	-				-1.3
1,747,623	-				-1.3
1,747,633	+				-1.8
1,747,638	+				+0.5
1,747,641	-				-0.8
1,747,641	-				+0.3
1,747,641	-				+1.5
1,747,660	-				+0.2
1,747,704	-				-1.6
1,747,704	-				-1.8
1,747,704	-				+0.3
1,747,714	-				+0.7
1,747,714	-				-0.5
1,747,731	-				-0.7
1,747,762	+				-3.1
1,747,762	+				+2.0
1,747,770	-				-1.0
1,747,780	-		GFF1723	0.11	-0.1
1,747,780	-		GFF1723	0.11	+0.4
1,747,808	+		GFF1723	0.16	-0.1
1,747,809	+		GFF1723	0.16	+0.7
1,747,809	+		GFF1723	0.16	-1.0
1,747,809	+		GFF1723	0.16	+0.8
1,747,816	+		GFF1723	0.18	+0.8
1,747,817	-		GFF1723	0.18	+1.4
1,747,817	-		GFF1723	0.18	+0.3
1,747,817	-		GFF1723	0.18	-1.0
1,747,817	-		GFF1723	0.18	+0.2
1,747,818	-		GFF1723	0.18	+0.3
1,747,818	-		GFF1723	0.18	+0.3
1,747,818	-		GFF1723	0.18	-2.0
1,747,823	-		GFF1723	0.19	-0.8
1,747,823	-		GFF1723	0.19	-0.2
1,747,823	-		GFF1723	0.19	-0.3
1,747,826	+		GFF1723	0.20	-0.9
1,747,826	+		GFF1723	0.20	-1.7
1,747,862	+		GFF1723	0.26	+0.1
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