Strain Fitness in Sphingobium sp. HT1-2 around GFF1702

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,727,404	+		GFF1700	0.47	-0.5
1,727,404	+		GFF1700	0.47	-0.7
1,727,404	+		GFF1700	0.47	-0.3
1,727,412	-		GFF1700	0.48	+1.2
1,727,412	-		GFF1700	0.48	+0.2
1,727,414	+		GFF1700	0.48	+0.1
1,727,414	+		GFF1700	0.48	-0.5
1,727,414	+		GFF1700	0.48	+0.7
1,727,414	+		GFF1700	0.48	-2.1
1,727,419	+		GFF1700	0.49	+0.8
1,727,422	-		GFF1700	0.49	-1.3
1,727,427	-		GFF1700	0.49	+1.2
1,727,429	+		GFF1700	0.50	-0.7
1,727,429	+		GFF1700	0.50	-1.5
1,727,429	+		GFF1700	0.50	-2.1
1,727,429	+		GFF1700	0.50	-1.7
1,727,429	+		GFF1700	0.50	-0.2
1,727,437	+		GFF1700	0.50	-0.1
1,727,437	-		GFF1700	0.50	-0.8
1,727,437	-		GFF1700	0.50	-0.3
1,727,437	-		GFF1700	0.50	-0.1
1,727,437	-		GFF1700	0.50	+0.2
1,727,437	-		GFF1700	0.50	-0.1
1,727,437	-		GFF1700	0.50	+1.1
1,727,442	-		GFF1700	0.51	-0.8
1,727,445	-		GFF1700	0.51	-0.2
1,727,445	-		GFF1700	0.51	-0.2
1,727,445	-		GFF1700	0.51	+0.4
1,727,447	-		GFF1700	0.51	+0.2
1,727,478	-		GFF1700	0.54	+0.8
1,727,490	+		GFF1700	0.55	+1.1
1,727,498	+		GFF1700	0.55	-1.5
1,727,498	+		GFF1700	0.55	+0.5
1,727,498	+		GFF1700	0.55	+0.2
1,727,498	+		GFF1700	0.55	-0.5
1,727,498	-		GFF1700	0.55	-0.3
1,727,506	-		GFF1700	0.56	+1.1
1,727,506	-		GFF1700	0.56	+0.9
1,727,506	-		GFF1700	0.56	+1.2
1,727,506	-		GFF1700	0.56	-0.6
1,727,506	-		GFF1700	0.56	-1.3
1,727,520	+		GFF1700	0.57	+0.8
1,727,520	+		GFF1700	0.57	-2.1
1,727,520	+		GFF1700	0.57	-0.1
1,727,528	-		GFF1700	0.58	+0.3
1,727,528	-		GFF1700	0.58	-0.6
1,727,528	-		GFF1700	0.58	+0.7
1,727,528	-		GFF1700	0.58	+0.0
1,727,528	-		GFF1700	0.58	+0.8
1,727,542	+		GFF1700	0.59	+1.0
1,727,542	+		GFF1700	0.59	+0.7
1,727,542	+		GFF1700	0.59	-1.8
1,727,550	-		GFF1700	0.60	+0.3
1,727,567	-		GFF1700	0.61	-0.3
1,727,578	+		GFF1700	0.62	-0.8
1,727,586	-		GFF1700	0.63	-0.5
1,727,587	-		GFF1700	0.63	-1.3
1,727,602	+		GFF1700	0.64	+0.2
1,727,602	+		GFF1700	0.64	+0.3
1,727,604	+		GFF1700	0.64	-0.6
1,727,610	-		GFF1700	0.65	-0.2
1,727,610	-		GFF1700	0.65	-0.6
1,727,622	-		GFF1700	0.66	-0.6
1,727,622	-		GFF1700	0.66	-0.5
1,727,658	+		GFF1700	0.69	+1.1
1,727,668	-		GFF1700	0.70	-1.1
1,727,675	-		GFF1700	0.70	-0.6
1,727,690	-		GFF1700	0.72	-1.0
1,727,698	+		GFF1700	0.72	-0.2
1,727,700	-		GFF1700	0.72	-1.6
1,727,700	-		GFF1700	0.72	-2.7
1,727,701	-		GFF1700	0.72	-0.4
1,727,754	+		GFF1700	0.77	-0.1
1,727,761	+		GFF1700	0.78	+1.5
1,727,778	+		GFF1700	0.79	+0.5
1,727,804	+		GFF1700	0.81	-2.7
1,727,810	+		GFF1700	0.82	+0.8
1,727,811	+		GFF1700	0.82	+0.7
1,727,824	+		GFF1700	0.83	+0.0
1,727,824	+		GFF1700	0.83	+0.2
1,727,824	+		GFF1700	0.83	-0.9
1,727,824	+		GFF1700	0.83	+0.1
1,727,824	+		GFF1700	0.83	-1.8
1,727,824	-		GFF1700	0.83	-1.3
1,727,832	-		GFF1700	0.84	+0.8
1,727,867	-		GFF1700	0.86	+0.0
1,727,871	+		GFF1700	0.87	-0.2
1,727,874	-		GFF1700	0.87	+0.2
1,727,879	-		GFF1700	0.88	-1.5
1,727,884	-		GFF1700	0.88	-0.8
1,727,884	-		GFF1700	0.88	-0.7
1,727,914	+				-0.6
1,727,914	+				+1.4
1,727,922	-				-1.2
1,727,955	+				-0.5
1,727,957	+				-0.4
1,728,007	+				+0.2
1,728,015	-				+0.8
1,728,032	+				-0.3
1,728,060	+				-0.7
1,728,081	+				-0.4
1,728,082	+				+0.1
1,728,103	+				+0.8
1,728,113	-				-1.9
1,728,135	+				+0.1
1,728,143	-				-0.6
1,728,149	+				-0.7
1,728,153	-				-2.3
1,728,157	-				-2.5
1,728,183	+		GFF1701	0.21	-0.3
1,728,190	-		GFF1701	0.24	+0.0
1,728,190	-		GFF1701	0.24	-0.3
1,728,190	-		GFF1701	0.24	+0.5
1,728,191	-		GFF1701	0.25	-1.5
1,728,228	+		GFF1701	0.42	+1.0
1,728,236	-		GFF1701	0.45	-0.8
1,728,251	-		GFF1701	0.52	-0.2
1,728,251	-		GFF1701	0.52	+0.6
1,728,255	+		GFF1701	0.54	-1.6
1,728,259	+		GFF1701	0.56	+1.2
1,728,263	-		GFF1701	0.58	-1.4
1,728,269	+		GFF1701	0.61	-1.7
1,728,269	+		GFF1701	0.61	-0.7
1,728,286	-		GFF1701	0.69	+0.2
1,728,286	-		GFF1701	0.69	+0.0
1,728,297	-		GFF1701	0.74	-0.2
1,728,303	-		GFF1701	0.76	-0.8
1,728,303	-		GFF1701	0.76	+0.6
1,728,303	-		GFF1701	0.76	-0.3
1,728,303	-		GFF1701	0.76	-0.2
1,728,305	+		GFF1701	0.77	+0.4
1,728,314	+		GFF1701	0.81	-1.6
1,728,365	-				+0.2
1,728,384	+				+0.4
1,728,394	+				+0.5
1,728,402	-				+0.9
1,728,404	+				+0.6
1,728,404	+				-0.8
1,728,404	+				-0.4
1,728,436	+				-1.0
1,728,436	+				-2.6
1,728,445	-				+0.2
1,728,455	+				+0.0
1,728,457	+				+0.4
1,728,486	+		GFF1702	0.13	-0.4
1,728,486	+		GFF1702	0.13	+0.1
1,728,495	+		GFF1702	0.14	+0.4
1,728,509	+		GFF1702	0.16	-1.2
1,728,520	+		GFF1702	0.18	-0.3
1,728,550	+		GFF1702	0.22	-0.8
1,728,557	-		GFF1702	0.23	-0.3
1,728,565	+		GFF1702	0.24	+0.9
1,728,588	+		GFF1702	0.28	+0.0
1,728,589	+		GFF1702	0.28	+0.3
1,728,589	+		GFF1702	0.28	-0.9
1,728,589	+		GFF1702	0.28	-2.3
1,728,589	+		GFF1702	0.28	-0.4
1,728,589	+		GFF1702	0.28	+0.8
1,728,589	+		GFF1702	0.28	+0.4
1,728,596	-		GFF1702	0.29	-0.5
1,728,596	-		GFF1702	0.29	-0.8
1,728,597	-		GFF1702	0.29	-0.0
1,728,597	-		GFF1702	0.29	+0.0
1,728,597	-		GFF1702	0.29	-0.2
1,728,607	+		GFF1702	0.30	-0.1
1,728,630	+		GFF1702	0.34	+0.7
1,728,644	-		GFF1702	0.36	-0.4
1,728,711	-		GFF1702	0.46	-0.2
1,728,711	-		GFF1702	0.46	-0.4
1,728,722	+		GFF1702	0.47	-0.0
1,728,722	+		GFF1702	0.47	-0.2
1,728,730	-		GFF1702	0.49	-0.3
1,728,766	-		GFF1702	0.54	-0.1
1,728,773	-		GFF1702	0.55	-1.1
1,728,775	+		GFF1702	0.55	+0.5
1,728,775	+		GFF1702	0.55	+1.5
1,728,775	+		GFF1702	0.55	-0.3
1,728,775	+		GFF1702	0.55	-1.2
1,728,775	+		GFF1702	0.55	+0.0
1,728,775	+		GFF1702	0.55	+0.3
1,728,783	-		GFF1702	0.56	+0.2
1,728,783	-		GFF1702	0.56	+0.2
1,728,783	-		GFF1702	0.56	+0.2
1,728,783	-		GFF1702	0.56	+0.1
1,728,802	-		GFF1702	0.59	-0.6
1,728,803	-		GFF1702	0.59	-0.6
1,728,818	-		GFF1702	0.62	-0.3
1,728,819	-		GFF1702	0.62	-0.4
1,728,831	-		GFF1702	0.63	+0.5
1,728,838	+		GFF1702	0.64	-0.5
1,728,868	+		GFF1702	0.69	+0.4
1,728,868	+		GFF1702	0.69	+0.2
1,728,889	-		GFF1702	0.72	-0.1
1,728,912	-		GFF1702	0.75	-0.9
1,728,922	+		GFF1702	0.77	-0.1
1,728,930	-		GFF1702	0.78	-1.8
1,728,932	+		GFF1702	0.78	+0.6
1,728,940	-		GFF1702	0.79	+1.4
1,728,940	-		GFF1702	0.79	-0.0
1,728,940	-		GFF1702	0.79	+0.7
1,728,950	+		GFF1702	0.81	-1.7
1,728,956	+		GFF1702	0.82	+0.8
1,728,966	+		GFF1702	0.83	+0.2
1,728,966	+		GFF1702	0.83	+0.2
1,728,968	+		GFF1702	0.84	-0.4
1,728,968	+		GFF1702	0.84	+0.5
1,728,974	-		GFF1702	0.85	+0.1
1,728,974	-		GFF1702	0.85	-2.0
1,728,974	-		GFF1702	0.85	+0.8
1,728,974	-		GFF1702	0.85	+0.4
1,728,974	-		GFF1702	0.85	+1.4
1,728,974	-		GFF1702	0.85	+0.6
1,728,976	+		GFF1702	0.85	-0.1
1,728,976	-		GFF1702	0.85	-1.5
1,729,029	+				-0.6
1,729,033	-				-0.3
1,729,040	-				-0.6
1,729,052	+				+0.4
1,729,058	+				+0.3
1,729,060	-				+0.9
1,729,068	+				-0.1
1,729,087	-				+0.1
1,729,217	+		GFF1703	0.37	+0.5
1,729,217	+		GFF1703	0.37	+0.7
1,729,223	+		GFF1703	0.40	-0.3
1,729,225	-		GFF1703	0.41	+0.2
1,729,225	-		GFF1703	0.41	-0.9
1,729,225	-		GFF1703	0.41	+0.5
1,729,256	+		GFF1703	0.56	-0.6
1,729,263	+		GFF1703	0.59	+0.1
1,729,264	-		GFF1703	0.60	-1.5
1,729,269	-		GFF1703	0.62	+0.9
1,729,270	-		GFF1703	0.63	-1.1
1,729,278	+		GFF1703	0.67	+2.3
1,729,278	+		GFF1703	0.67	-0.3
1,729,278	+		GFF1703	0.67	-1.5
1,729,283	+		GFF1703	0.69	-1.0
1,729,286	-		GFF1703	0.71	-1.0
1,729,286	-		GFF1703	0.71	-0.6
1,729,288	+		GFF1703	0.71	+0.0
1,729,288	+		GFF1703	0.71	-1.5
1,729,288	+		GFF1703	0.71	+1.0
1,729,288	+		GFF1703	0.71	+0.8
1,729,296	-		GFF1703	0.75	-0.4
1,729,296	-		GFF1703	0.75	-0.5
1,729,296	-		GFF1703	0.75	-1.1
1,729,296	-		GFF1703	0.75	+0.1
1,729,296	-		GFF1703	0.75	-0.5
1,729,296	-		GFF1703	0.75	-0.3
1,729,305	+		GFF1703	0.80	-1.3
1,729,353	-				-1.0
1,729,371	+				+0.7
1,729,387	+				+2.2
1,729,402	+				+0.4
1,729,402	+				+0.1
1,729,404	+				-2.3
1,729,412	+				+1.2
1,729,487	-				-1.7
1,729,487	-				-2.3
1,729,492	+				-0.9
1,729,492	+				+0.2
1,729,500	-				-0.3
1,729,500	-				+0.2
1,729,500	-				-1.1
1,729,500	-				-0.7
1,729,514	+				-2.1
1,729,516	+				+0.7
1,729,516	+				-2.1
1,729,517	-				-0.5
1,729,521	+				-0.1
1,729,541	-				-0.4
1,729,544	-				-0.2
1,729,554	+				+0.0
1,729,610	+		GFF1704	0.22	-1.6
1,729,618	-		GFF1704	0.24	+0.4
1,729,618	-		GFF1704	0.24	-0.6
1,729,618	-		GFF1704	0.24	+1.2
1,729,692	-		GFF1704	0.43	+0.5
1,729,703	+		GFF1704	0.46	-1.9
1,729,703	+		GFF1704	0.46	+0.6
1,729,706	-		GFF1704	0.47	+1.6
1,729,708	+		GFF1704	0.47	+0.1
1,729,708	+		GFF1704	0.47	-0.1
1,729,708	+		GFF1704	0.47	-0.3
1,729,708	+		GFF1704	0.47	+0.7
1,729,708	+		GFF1704	0.47	-2.1
1,729,716	-		GFF1704	0.49	-2.1
1,729,732	+		GFF1704	0.54	+1.0
1,729,801	-		GFF1704	0.72	+1.0
1,729,819	-		GFF1704	0.76	-2.1
1,729,829	-		GFF1704	0.79	-0.3
1,729,829	-		GFF1704	0.79	+0.2
1,729,836	+		GFF1704	0.81	+1.1
1,729,836	+		GFF1704	0.81	-0.2
1,729,836	+		GFF1704	0.81	-1.3
1,729,836	+		GFF1704	0.81	-0.5
1,729,836	+		GFF1704	0.81	+0.4
1,729,839	-		GFF1704	0.82	+0.5
1,729,839	-		GFF1704	0.82	+0.3
1,729,841	+		GFF1704	0.82	+0.7
1,729,841	+		GFF1704	0.82	-0.6
1,729,844	-		GFF1704	0.83	+0.1
1,729,844	-		GFF1704	0.83	+0.6
1,729,844	-		GFF1704	0.83	-1.6
1,729,844	-		GFF1704	0.83	-1.2
1,729,849	-		GFF1704	0.84	+0.3
1,729,849	-		GFF1704	0.84	-1.5
1,729,849	-		GFF1704	0.84	+0.6
1,729,871	-				-2.1
1,729,888	+				+0.7
1,729,896	-				-1.0
1,729,927	+				+0.3
1,729,932	+				-0.6
1,729,935	-				-0.5
1,729,935	-				+0.1
1,729,940	-				+0.7
1,729,940	-				-0.3
1,729,945	+				-0.9
1,729,945	+				+0.2
1,729,982	+				-0.6
1,729,992	+				-1.3
1,729,992	-				+0.5
1,730,006	-				+0.0
1,730,008	+				-0.7
1,730,008	+				-0.1
1,730,008	+				+0.5
1,730,016	-				+0.2
1,730,021	-				-1.8
1,730,022	+				-2.0
1,730,022	+				-0.3
1,730,023	+				-0.1