Strain Fitness in Sphingobium sp. HT1-2 around GFF1596

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,622,883	+		GFF1594	0.76	-0.4
1,622,883	+		GFF1594	0.76	-0.2
1,622,891	-		GFF1594	0.77	-1.2
1,622,891	-		GFF1594	0.77	+0.1
1,622,922	+		GFF1594	0.80	-0.6
1,622,930	-		GFF1594	0.81	-0.9
1,622,933	+		GFF1594	0.81	-1.5
1,622,949	+		GFF1594	0.83	-1.2
1,622,983	+		GFF1594	0.86	+2.3
1,623,009	-		GFF1594	0.89	-1.1
1,623,087	-				-1.6
1,623,087	-				-0.8
1,623,089	+				-0.4
1,623,118	+				-2.5
1,623,213	+		GFF1595	0.16	-1.8
1,623,745	+				-0.3
1,623,751	+				+0.4
1,623,753	-				-0.3
1,623,765	-				-0.3
1,623,816	+				-2.9
1,623,823	+				+0.1
1,623,824	-				-0.6
1,623,837	+				+1.8
1,623,858	+		GFF1596	0.13	+0.1
1,623,858	+		GFF1596	0.13	+0.0
1,623,858	+		GFF1596	0.13	-1.1
1,623,858	+		GFF1596	0.13	+0.4
1,623,858	+		GFF1596	0.13	-2.1
1,623,858	+		GFF1596	0.13	+0.8
1,623,858	+		GFF1596	0.13	+0.5
1,623,864	+		GFF1596	0.14	-0.0
1,623,866	-		GFF1596	0.15	-0.9
1,623,866	-		GFF1596	0.15	+1.4
1,623,886	+		GFF1596	0.19	-0.4
1,623,891	+		GFF1596	0.20	+0.5
1,623,892	-		GFF1596	0.20	+0.9
1,623,960	+		GFF1596	0.33	+1.2
1,623,960	+		GFF1596	0.33	+0.4
1,623,960	+		GFF1596	0.33	+1.3
1,623,960	+		GFF1596	0.33	-1.0
1,623,965	+		GFF1596	0.34	-1.2
1,623,968	-		GFF1596	0.34	+0.2
1,623,982	+		GFF1596	0.37	-1.1
1,623,987	+		GFF1596	0.38	+0.6
1,623,987	+		GFF1596	0.38	+0.8
1,624,016	+		GFF1596	0.43	-0.2
1,624,016	+		GFF1596	0.43	-2.4
1,624,017	+		GFF1596	0.44	-0.5
1,624,017	+		GFF1596	0.44	+0.5
1,624,017	+		GFF1596	0.44	-0.6
1,624,017	+		GFF1596	0.44	+0.4
1,624,017	+		GFF1596	0.44	+0.4
1,624,017	+		GFF1596	0.44	-0.6
1,624,017	+		GFF1596	0.44	-0.7
1,624,017	+		GFF1596	0.44	-0.6
1,624,017	+		GFF1596	0.44	-0.4
1,624,017	+		GFF1596	0.44	-0.7
1,624,017	+		GFF1596	0.44	+0.7
1,624,017	+		GFF1596	0.44	-0.6
1,624,017	+		GFF1596	0.44	-0.7
1,624,023	-		GFF1596	0.45	-2.3
1,624,024	-		GFF1596	0.45	+0.8
1,624,024	-		GFF1596	0.45	-0.2
1,624,024	-		GFF1596	0.45	+0.0
1,624,025	-		GFF1596	0.45	+0.4
1,624,025	-		GFF1596	0.45	-1.8
1,624,025	-		GFF1596	0.45	+0.3
1,624,025	-		GFF1596	0.45	+0.1
1,624,025	-		GFF1596	0.45	-0.2
1,624,025	-		GFF1596	0.45	-0.1
1,624,025	-		GFF1596	0.45	+1.1
1,624,025	-		GFF1596	0.45	+0.1
1,624,025	-		GFF1596	0.45	+0.2
1,624,025	-		GFF1596	0.45	+0.7
1,624,025	-		GFF1596	0.45	-0.4
1,624,025	-		GFF1596	0.45	-1.4
1,624,025	-		GFF1596	0.45	+1.9
1,624,025	-		GFF1596	0.45	-0.9
1,624,046	-		GFF1596	0.49	+0.1
1,624,065	+		GFF1596	0.53	-2.2
1,624,070	+		GFF1596	0.54	+0.6
1,624,140	+		GFF1596	0.67	-0.3
1,624,151	+		GFF1596	0.69	-0.6
1,624,183	-		GFF1596	0.75	-0.6
1,624,200	+		GFF1596	0.79	+0.3
1,624,213	-		GFF1596	0.81	+0.1
1,624,247	+		GFF1596	0.88	-0.2
1,624,255	-		GFF1596	0.89	+0.0
1,624,298	+				+0.6
1,624,299	+				-1.0
1,624,299	+				-0.5
1,624,299	+				+1.4
1,624,299	+				+0.9
1,624,299	+				-0.5
1,624,299	+				+0.1
1,624,299	+				-0.4
1,624,304	+				-0.7
1,624,304	+				-0.6
1,624,304	+				+0.6
1,624,304	+				-1.4
1,624,307	-				-0.3
1,624,307	-				-1.9
1,624,307	-				-0.0
1,624,341	+				+0.4
1,624,378	+				-1.3
1,624,386	-		GFF1597	0.11	-0.6
1,624,428	-		GFF1597	0.21	-1.5
1,624,438	+		GFF1597	0.24	-1.2
1,624,438	+		GFF1597	0.24	-0.4
1,624,438	+		GFF1597	0.24	+0.5
1,624,446	-		GFF1597	0.26	-0.2
1,624,446	-		GFF1597	0.26	-1.9
1,624,446	-		GFF1597	0.26	-0.7
1,624,446	-		GFF1597	0.26	+0.8
1,624,448	+		GFF1597	0.26	+1.7
1,624,451	-		GFF1597	0.27	+0.2
1,624,451	-		GFF1597	0.27	-0.0
1,624,456	-		GFF1597	0.28	-1.6
1,624,456	-		GFF1597	0.28	+0.5
1,624,468	+		GFF1597	0.31	+0.8
1,624,468	+		GFF1597	0.31	-1.2
1,624,473	+		GFF1597	0.32	+0.3
1,624,473	+		GFF1597	0.32	-0.4
1,624,476	-		GFF1597	0.33	-2.8
1,624,476	-		GFF1597	0.33	+0.1
1,624,481	-		GFF1597	0.34	-1.4
1,624,516	+		GFF1597	0.42	-0.7
1,624,521	+		GFF1597	0.44	-2.2
1,624,532	+		GFF1597	0.46	-1.4
1,624,534	+		GFF1597	0.47	+0.2
1,624,539	+		GFF1597	0.48	-0.2
1,624,540	-		GFF1597	0.48	+0.8
1,624,542	-		GFF1597	0.49	-0.7
1,624,545	-		GFF1597	0.49	+1.8
1,624,547	+		GFF1597	0.50	-0.2
1,624,561	-		GFF1597	0.53	-0.4
1,624,572	+		GFF1597	0.56	+0.0
1,624,580	-		GFF1597	0.58	-0.2
1,624,580	-		GFF1597	0.58	-1.2
1,624,580	-		GFF1597	0.58	+0.4
1,624,588	-		GFF1597	0.60	-0.6
1,624,588	-		GFF1597	0.60	-1.9
1,624,597	+		GFF1597	0.62	-0.1
1,624,600	-		GFF1597	0.62	+0.4
1,624,604	+		GFF1597	0.63	-0.5
1,624,610	-		GFF1597	0.65	-0.9
1,624,619	+		GFF1597	0.67	+0.0
1,624,630	+		GFF1597	0.70	-0.2
1,624,630	+		GFF1597	0.70	+0.9
1,624,630	+		GFF1597	0.70	+1.2
1,624,630	+		GFF1597	0.70	-0.3
1,624,630	+		GFF1597	0.70	+0.8
1,624,635	+		GFF1597	0.71	+1.5
1,624,638	-		GFF1597	0.71	+0.4
1,624,638	-		GFF1597	0.71	-1.1
1,624,643	+		GFF1597	0.73	-0.2
1,624,643	+		GFF1597	0.73	-0.9
1,624,651	-		GFF1597	0.75	+0.2
1,624,683	-		GFF1597	0.82	-1.2
1,624,688	-		GFF1597	0.83	-1.5
1,624,719	+				-0.6
1,624,727	-				-0.5
1,624,727	-				-0.4
1,624,727	-				-0.5
1,624,741	-				+0.4
1,624,745	+				+1.6
1,624,747	-				-1.9
1,624,752	+				-2.9
1,624,752	+				-0.0
1,624,775	+				+0.4
1,624,778	-				-0.2
1,624,778	-				+0.9
1,624,816	-		GFF1598	0.12	-1.6
1,624,856	+		GFF1598	0.20	-0.2
1,624,858	-		GFF1598	0.20	+0.2
1,624,893	+		GFF1598	0.27	-1.1
1,624,893	+		GFF1598	0.27	-1.7
1,624,898	+		GFF1598	0.28	+0.6
1,624,898	+		GFF1598	0.28	+0.3
1,624,906	-		GFF1598	0.29	-2.1
1,624,906	-		GFF1598	0.29	-0.1
1,624,911	-		GFF1598	0.30	+1.1
1,624,929	-		GFF1598	0.34	+1.7
1,624,929	-		GFF1598	0.34	+0.2
1,624,929	-		GFF1598	0.34	+0.1
1,624,929	-		GFF1598	0.34	-0.2
1,624,929	-		GFF1598	0.34	-0.8
1,624,936	-		GFF1598	0.35	-0.8
1,624,945	+		GFF1598	0.37	-0.2
1,624,947	-		GFF1598	0.37	-0.4
1,624,965	-		GFF1598	0.41	+0.8
1,624,965	-		GFF1598	0.41	-0.6
1,624,982	+		GFF1598	0.44	-0.6
1,624,994	-		GFF1598	0.47	+0.8
1,625,010	-		GFF1598	0.50	-0.4
1,625,026	-		GFF1598	0.53	-0.5
1,625,040	-		GFF1598	0.55	+0.3
1,625,042	+		GFF1598	0.56	-1.5
1,625,042	+		GFF1598	0.56	-1.7
1,625,066	-		GFF1598	0.60	-0.5
1,625,072	-		GFF1598	0.62	+1.0
1,625,088	+		GFF1598	0.65	-2.0
1,625,090	+		GFF1598	0.65	-1.5
1,625,090	+		GFF1598	0.65	-0.3
1,625,104	+		GFF1598	0.68	-0.7
1,625,112	+		GFF1598	0.69	-0.8
1,625,112	-		GFF1598	0.69	-0.1
1,625,112	-		GFF1598	0.69	+0.3
1,625,115	-		GFF1598	0.70	-1.2
1,625,141	-		GFF1598	0.75	+0.8
1,625,145	+		GFF1598	0.76	-1.1
1,625,153	-		GFF1598	0.77	+0.1
1,625,155	+		GFF1598	0.78	-0.7
1,625,176	+		GFF1598	0.82	-0.3
1,625,178	-		GFF1598	0.82	+0.3
1,625,184	+		GFF1598	0.83	+0.9
1,625,189	+		GFF1598	0.84	+0.0
1,625,192	-		GFF1598	0.85	+0.1
1,625,192	-		GFF1598	0.85	-1.8
1,625,192	-		GFF1598	0.85	-0.9
1,625,192	-		GFF1598	0.85	-0.1
1,625,194	+		GFF1598	0.85	-1.2
1,625,194	+		GFF1598	0.85	-0.4
1,625,200	+		GFF1598	0.86	-1.0
1,625,202	-		GFF1598	0.87	+1.1
1,625,202	-		GFF1598	0.87	-0.9
1,625,228	+				-1.3
1,625,233	+				-0.9
1,625,233	+				+1.6
1,625,236	-				-1.2
1,625,241	-				+0.8
1,625,241	-				-1.9
1,625,241	-				-1.3
1,625,241	-				-0.0
1,625,246	-				-0.8
1,625,272	-				-1.4
1,625,278	+				-0.8
1,625,278	+				+1.2
1,625,286	-				-0.3