Strain Fitness in Sphingobium sp. HT1-2 around GFF1425

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,453,591	+		GFF1424	0.49	-2.1
1,453,591	+		GFF1424	0.49	-1.6
1,453,598	+		GFF1424	0.50	-2.7
1,453,602	+		GFF1424	0.50	-3.5
1,453,602	+		GFF1424	0.50	-1.8
1,453,610	-		GFF1424	0.50	-3.5
1,453,612	+		GFF1424	0.50	-1.3
1,453,612	+		GFF1424	0.50	-2.3
1,453,612	+		GFF1424	0.50	-0.4
1,453,612	+		GFF1424	0.50	-0.5
1,453,612	+		GFF1424	0.50	-3.0
1,453,620	-		GFF1424	0.51	-0.6
1,453,620	-		GFF1424	0.51	-2.0
1,453,620	-		GFF1424	0.51	-2.3
1,453,632	+		GFF1424	0.51	-1.6
1,453,636	+		GFF1424	0.52	+0.0
1,453,640	-		GFF1424	0.52	-1.7
1,453,667	+		GFF1424	0.53	+0.2
1,453,687	+		GFF1424	0.54	-1.8
1,453,693	+		GFF1424	0.55	-0.7
1,453,706	+		GFF1424	0.55	-1.8
1,453,711	+		GFF1424	0.56	-1.2
1,453,719	-		GFF1424	0.56	-3.1
1,453,723	+		GFF1424	0.56	-2.6
1,453,724	-		GFF1424	0.56	-1.4
1,453,765	+		GFF1424	0.59	-1.2
1,453,797	-		GFF1424	0.60	-1.9
1,453,797	-		GFF1424	0.60	-0.9
1,453,810	+		GFF1424	0.61	-1.2
1,453,818	-		GFF1424	0.61	-1.6
1,453,841	+		GFF1424	0.63	-1.8
1,453,841	+		GFF1424	0.63	-2.7
1,453,841	+		GFF1424	0.63	+0.8
1,453,841	+		GFF1424	0.63	-1.7
1,453,849	-		GFF1424	0.63	-1.2
1,453,874	+		GFF1424	0.64	+0.3
1,453,874	+		GFF1424	0.64	-1.1
1,453,916	+		GFF1424	0.67	-2.1
1,453,916	+		GFF1424	0.67	-3.4
1,453,948	-		GFF1424	0.68	-2.7
1,453,954	-		GFF1424	0.69	-2.0
1,453,954	-		GFF1424	0.69	-3.9
1,453,975	+		GFF1424	0.70	-2.7
1,453,978	-		GFF1424	0.70	-2.2
1,453,983	-		GFF1424	0.70	-1.8
1,453,992	-		GFF1424	0.71	-1.9
1,454,003	+		GFF1424	0.71	-1.3
1,454,008	-		GFF1424	0.72	-2.1
1,454,012	+		GFF1424	0.72	-2.4
1,454,012	+		GFF1424	0.72	-1.0
1,454,012	+		GFF1424	0.72	-0.7
1,454,020	-		GFF1424	0.72	-2.0
1,454,020	-		GFF1424	0.72	-2.0
1,454,041	-		GFF1424	0.73	-1.5
1,454,041	-		GFF1424	0.73	-1.2
1,454,081	+		GFF1424	0.76	-2.4
1,454,087	-		GFF1424	0.76	-1.6
1,454,123	+		GFF1424	0.78	-3.3
1,454,123	+		GFF1424	0.78	-1.2
1,454,123	-		GFF1424	0.78	-2.0
1,454,125	+		GFF1424	0.78	-1.9
1,454,131	-		GFF1424	0.78	-1.4
1,454,133	-		GFF1424	0.78	-2.3
1,454,133	-		GFF1424	0.78	-2.2
1,454,133	-		GFF1424	0.78	-1.2
1,454,133	-		GFF1424	0.78	-1.5
1,454,133	-		GFF1424	0.78	-1.0
1,454,136	+		GFF1424	0.79	-1.4
1,454,144	-		GFF1424	0.79	-1.0
1,454,149	+		GFF1424	0.79	-1.6
1,454,191	+		GFF1424	0.81	+0.6
1,454,191	+		GFF1424	0.81	-2.4
1,454,191	+		GFF1424	0.81	-2.6
1,454,192	+		GFF1424	0.82	-0.6
1,454,194	-		GFF1424	0.82	-1.4
1,454,196	+		GFF1424	0.82	-3.4
1,454,197	+		GFF1424	0.82	-2.4
1,454,199	-		GFF1424	0.82	-2.6
1,454,199	-		GFF1424	0.82	-2.4
1,454,199	-		GFF1424	0.82	-1.1
1,454,200	-		GFF1424	0.82	-2.5
1,454,200	-		GFF1424	0.82	-1.1
1,454,200	-		GFF1424	0.82	-2.7
1,454,200	-		GFF1424	0.82	-1.9
1,454,200	-		GFF1424	0.82	-0.4
1,454,205	-		GFF1424	0.82	-1.6
1,454,217	-		GFF1424	0.83	-1.9
1,454,217	-		GFF1424	0.83	-2.0
1,454,217	-		GFF1424	0.83	-1.4
1,454,243	+		GFF1424	0.84	-2.0
1,454,246	-		GFF1424	0.84	+0.3
1,454,256	-		GFF1424	0.85	-2.2
1,454,259	-		GFF1424	0.85	-2.2
1,454,268	-		GFF1424	0.86	-2.6
1,454,271	+		GFF1424	0.86	-0.8
1,454,273	-		GFF1424	0.86	-2.8
1,454,307	-		GFF1424	0.88	-2.1
1,454,307	-		GFF1424	0.88	-2.7
1,454,313	+		GFF1424	0.88	-1.6
1,454,343	+		GFF1424	0.90	-2.3
1,454,364	+				-2.0
1,454,364	+				-1.9
1,454,369	+				-1.0
1,454,372	-				-2.6
1,454,372	-				-1.5
1,454,372	-				-1.6
1,454,372	-				-2.0
1,454,374	+				-0.4
1,454,387	-				-2.2
1,454,397	-				-0.4
1,454,463	+				-1.2
1,454,471	-				-1.4
1,454,471	-				-1.7
1,454,487	-				-3.1
1,454,508	+				+0.4
1,454,509	-				+0.3
1,454,516	-				-0.5
1,454,552	+				-0.5
1,454,583	+				+1.1
1,454,615	+				+0.2
1,454,623	-				-0.4
1,454,655	-				+0.1
1,454,657	+				-1.2
1,454,657	+				-0.4
1,454,657	+				+0.0
1,454,657	+				-0.8
1,454,657	+				+1.1
1,454,657	+				+0.3
1,454,657	+				-0.9
1,454,657	+				-0.3
1,454,657	+				+0.3
1,454,657	+				-0.3
1,454,657	+				-0.6
1,454,657	+				+2.2
1,454,657	+				+0.5
1,454,657	+				-0.1
1,454,657	+				+0.3
1,454,657	+				+0.5
1,454,657	+				+1.3
1,454,657	+				+1.1
1,454,657	+				+0.6
1,454,657	+				-0.5
1,454,657	+				-2.6
1,454,657	+				+0.7
1,454,657	+				-1.0
1,454,657	+				+1.6
1,454,657	+				-0.3
1,454,657	+				-0.0
1,454,657	+				+0.4
1,454,657	+				-1.6
1,454,660	-				+0.8
1,454,665	-				-2.8
1,454,665	-				-0.2
1,454,665	-				+0.1
1,454,665	-				-0.4
1,454,665	-				-1.2
1,454,665	-				-0.8
1,454,665	-				-1.2
1,454,665	-				-0.0
1,454,665	-				+0.8
1,454,665	-				-0.5
1,454,665	-				-0.3
1,454,665	-				+0.8
1,454,665	-				+0.7
1,454,665	-				+0.7
1,454,665	-				+0.6
1,454,665	-				+0.2
1,454,665	-				-2.0
1,454,665	-				+1.0
1,454,665	-				-0.2
1,454,665	-				-0.6
1,454,665	-				-0.8
1,454,665	-				-0.2
1,454,685	-				+0.1
1,454,696	-				-0.1
1,454,716	+				+0.6
1,454,716	+				-0.8
1,454,716	-				-0.0
1,454,724	-				+0.2
1,454,746	+				+0.6
1,454,746	-				+1.1
1,454,754	-				+1.4
1,454,754	-				-0.4
1,454,756	+				+0.5
1,454,764	-				-0.8
1,454,789	-				-0.1
1,454,837	+		GFF1425	0.12	-0.3
1,454,838	+		GFF1425	0.12	-0.0
1,454,838	+		GFF1425	0.12	+0.1
1,454,841	-		GFF1425	0.12	-0.4
1,454,843	+		GFF1425	0.12	+0.6
1,454,843	+		GFF1425	0.12	-0.3
1,454,845	-		GFF1425	0.12	+0.0
1,454,845	-		GFF1425	0.12	-0.3
1,454,845	-		GFF1425	0.12	-1.0
1,454,856	-		GFF1425	0.13	-0.8
1,454,863	+		GFF1425	0.13	-1.1
1,454,869	+		GFF1425	0.13	-0.8
1,454,870	-		GFF1425	0.13	-0.2
1,454,877	-		GFF1425	0.14	+0.3
1,454,878	+		GFF1425	0.14	-0.2
1,454,886	-		GFF1425	0.14	+0.5
1,454,892	+		GFF1425	0.15	-0.5
1,454,900	-		GFF1425	0.15	+0.4
1,454,905	-		GFF1425	0.15	-2.4
1,454,905	-		GFF1425	0.15	+1.3
1,454,905	-		GFF1425	0.15	-1.0
1,454,945	+		GFF1425	0.17	-1.3
1,454,953	+		GFF1425	0.17	+1.8
1,454,953	+		GFF1425	0.17	-2.3
1,454,960	-		GFF1425	0.18	+0.2
1,454,993	+		GFF1425	0.19	-0.3
1,454,993	+		GFF1425	0.19	-0.8
1,454,999	-		GFF1425	0.19	+0.6
1,455,013	+		GFF1425	0.20	+0.0
1,455,021	-		GFF1425	0.20	-0.7
1,455,021	-		GFF1425	0.20	-1.4
1,455,021	-		GFF1425	0.20	+0.5
1,455,070	-		GFF1425	0.23	+0.2
1,455,083	+		GFF1425	0.23	-0.2
1,455,140	-		GFF1425	0.26	+0.2
1,455,145	+		GFF1425	0.26	-0.8
1,455,175	+		GFF1425	0.28	-0.4
1,455,198	-		GFF1425	0.29	+0.2
1,455,200	+		GFF1425	0.29	-0.0
1,455,206	+		GFF1425	0.29	-1.3
1,455,206	+		GFF1425	0.29	-0.4
1,455,219	-		GFF1425	0.30	-2.1
1,455,224	-		GFF1425	0.30	+1.1
1,455,238	+		GFF1425	0.30	+0.1
1,455,238	-		GFF1425	0.30	+0.4
1,455,246	+		GFF1425	0.31	-0.8
1,455,260	+		GFF1425	0.31	-1.0
1,455,264	-		GFF1425	0.32	-0.2
1,455,264	-		GFF1425	0.32	-0.8
1,455,265	+		GFF1425	0.32	+0.5
1,455,265	+		GFF1425	0.32	-0.3
1,455,270	+		GFF1425	0.32	-0.1
1,455,278	-		GFF1425	0.32	-0.5
1,455,279	-		GFF1425	0.32	-0.6
1,455,288	-		GFF1425	0.33	+0.0
1,455,296	+		GFF1425	0.33	+0.9
1,455,337	-		GFF1425	0.35	-0.6
1,455,343	-		GFF1425	0.35	-0.9
1,455,374	-		GFF1425	0.37	-0.0
1,455,374	-		GFF1425	0.37	-1.6
1,455,374	-		GFF1425	0.37	-1.2
1,455,376	+		GFF1425	0.37	-0.5
1,455,380	-		GFF1425	0.37	+0.8
1,455,384	-		GFF1425	0.37	+1.1
1,455,397	+		GFF1425	0.38	+1.2
1,455,397	+		GFF1425	0.38	+0.5
1,455,400	-		GFF1425	0.38	-0.1
1,455,405	-		GFF1425	0.38	-1.8
1,455,407	+		GFF1425	0.38	+0.8
1,455,435	+		GFF1425	0.39	-0.1
1,455,443	-		GFF1425	0.40	-0.1
1,455,443	-		GFF1425	0.40	-0.3
1,455,443	-		GFF1425	0.40	+1.0
1,455,443	-		GFF1425	0.40	-0.5
1,455,443	-		GFF1425	0.40	+0.8
1,455,443	-		GFF1425	0.40	-0.3
1,455,449	-		GFF1425	0.40	-0.5
1,455,451	+		GFF1425	0.40	-1.1
1,455,527	+		GFF1425	0.44	-1.2
1,455,527	+		GFF1425	0.44	+0.9
1,455,530	-		GFF1425	0.44	+1.4
1,455,530	-		GFF1425	0.44	+0.4
1,455,532	+		GFF1425	0.44	-1.2
1,455,537	+		GFF1425	0.44	-3.4
1,455,572	+		GFF1425	0.46	-1.8
1,455,580	+		GFF1425	0.46	+0.2
1,455,588	-		GFF1425	0.46	-1.1
1,455,598	+		GFF1425	0.47	-1.2
1,455,606	-		GFF1425	0.47	+0.4
1,455,614	+		GFF1425	0.48	+1.0
1,455,619	+		GFF1425	0.48	-1.7
1,455,622	-		GFF1425	0.48	+0.3
1,455,658	+		GFF1425	0.50	-2.0
1,455,660	+		GFF1425	0.50	-0.3
1,455,664	+		GFF1425	0.50	-0.2
1,455,664	+		GFF1425	0.50	-0.1
1,455,664	+		GFF1425	0.50	-1.8
1,455,664	+		GFF1425	0.50	-0.3
1,455,664	+		GFF1425	0.50	-1.0
1,455,668	-		GFF1425	0.50	-0.2
1,455,668	-		GFF1425	0.50	+0.9
1,455,670	+		GFF1425	0.50	-1.5
1,455,672	-		GFF1425	0.50	-1.6
1,455,672	-		GFF1425	0.50	+0.1
1,455,672	-		GFF1425	0.50	-1.2
1,455,672	-		GFF1425	0.50	-1.7
1,455,672	-		GFF1425	0.50	+0.4
1,455,672	-		GFF1425	0.50	-1.6
1,455,678	-		GFF1425	0.51	-2.5
1,455,680	+		GFF1425	0.51	-0.7
1,455,691	+		GFF1425	0.51	-1.2
1,455,691	+		GFF1425	0.51	-1.6
1,455,691	+		GFF1425	0.51	-1.2
1,455,694	-		GFF1425	0.51	+1.3
1,455,694	-		GFF1425	0.51	-1.2
1,455,698	+		GFF1425	0.52	-1.0
1,455,698	+		GFF1425	0.52	-0.1
1,455,698	+		GFF1425	0.52	+0.6
1,455,698	+		GFF1425	0.52	-0.2
1,455,699	-		GFF1425	0.52	-0.5
1,455,699	-		GFF1425	0.52	+0.9
1,455,699	-		GFF1425	0.52	+0.9
1,455,701	-		GFF1425	0.52	+0.3
1,455,701	-		GFF1425	0.52	+0.0
1,455,706	-		GFF1425	0.52	+1.0
1,455,706	-		GFF1425	0.52	-0.5
1,455,707	-		GFF1425	0.52	+0.1
1,455,723	+		GFF1425	0.53	-1.8
1,455,725	+		GFF1425	0.53	+0.4
1,455,725	+		GFF1425	0.53	-0.3
1,455,731	-		GFF1425	0.53	-0.2
1,455,733	-		GFF1425	0.53	+0.1
1,455,733	-		GFF1425	0.53	+0.2
1,455,779	-		GFF1425	0.55	-0.2
1,455,781	+		GFF1425	0.55	-0.3
1,455,782	+		GFF1425	0.55	-1.9
1,455,782	+		GFF1425	0.55	-1.3
1,455,782	+		GFF1425	0.55	-0.3
1,455,782	+		GFF1425	0.55	-0.2
1,455,782	+		GFF1425	0.55	-1.2
1,455,782	+		GFF1425	0.55	-0.5
1,455,790	+		GFF1425	0.56	+0.3
1,455,790	-		GFF1425	0.56	-1.2
1,455,790	-		GFF1425	0.56	-0.7
1,455,790	-		GFF1425	0.56	-1.7
1,455,790	-		GFF1425	0.56	-0.4
1,455,790	-		GFF1425	0.56	+0.5
1,455,790	-		GFF1425	0.56	+0.7
1,455,790	-		GFF1425	0.56	+1.6
1,455,792	+		GFF1425	0.56	-0.0
1,455,798	-		GFF1425	0.56	-1.9
1,455,800	-		GFF1425	0.56	+0.9
1,455,837	+		GFF1425	0.58	+0.0
1,455,851	-		GFF1425	0.59	-0.3
1,455,863	+		GFF1425	0.59	-1.4
1,455,873	+		GFF1425	0.60	-0.1
1,455,876	-		GFF1425	0.60	-2.1
1,455,886	-		GFF1425	0.60	-0.9
1,455,893	+		GFF1425	0.60	-1.1
1,455,897	-		GFF1425	0.61	+0.1
1,455,907	+		GFF1425	0.61	-1.0
1,455,909	+		GFF1425	0.61	-0.8
1,455,935	+		GFF1425	0.62	-2.0
1,455,935	+		GFF1425	0.62	+0.1
1,455,935	+		GFF1425	0.62	+0.3
1,455,935	+		GFF1425	0.62	-2.1
1,455,935	+		GFF1425	0.62	+0.3
1,455,935	+		GFF1425	0.62	+1.3
1,455,943	-		GFF1425	0.63	+0.4
1,455,943	-		GFF1425	0.63	+0.5
1,455,969	+		GFF1425	0.64	-0.6
1,455,995	+		GFF1425	0.65	-0.5
1,455,996	+		GFF1425	0.65	-0.7
1,455,996	+		GFF1425	0.65	+0.9
1,456,014	-		GFF1425	0.66	-0.4
1,456,023	+		GFF1425	0.66	-0.8
1,456,028	+		GFF1425	0.67	-0.4
1,456,028	+		GFF1425	0.67	+0.5
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1,456,232	-		GFF1425	0.76	-1.5
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1,456,512	+		GFF1425	0.89	+0.3
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1,456,520	-		GFF1425	0.89	-1.9
1,456,520	-		GFF1425	0.89	-1.9
1,456,530	+		GFF1425	0.90	-0.4
1,456,551	+				+0.5
1,456,559	-				-2.6
1,456,559	-				-0.7
1,456,570	+				-0.6
1,456,571	-				+0.7
1,456,578	-				-0.4
1,456,592	+				+0.3
1,456,600	-				-1.6
1,456,627	+				-0.9
1,456,635	-				-0.8
1,456,645	-				-0.1
1,456,645	-				+1.0
1,456,645	-				-0.1
1,456,647	+				-0.5
1,456,647	+				-0.5
1,456,647	+				-1.1
1,456,650	-				-0.3
1,456,655	-				-1.2
1,456,655	-				-1.0
1,456,655	-				+0.0
1,456,655	-				-0.7
1,456,655	-				-1.7
1,456,655	-				+1.4
1,456,655	-				+0.2
1,456,655	-				+0.9
1,456,739	-				-0.3
1,456,744	+				-0.4
1,456,747	-				+0.3
1,456,747	-				-1.0
1,456,747	-				+0.3
1,456,752	-				+1.0
1,456,752	-				+0.7
1,456,763	-				-0.2
1,456,831	+				+0.5
1,456,831	-				-0.9
1,456,839	-				-2.7
1,456,839	-				+0.3
1,456,857	-				-0.0
1,456,911	+				+0.2
1,456,913	-				-1.5
1,456,921	+				-0.4
1,456,929	-				-0.1
1,456,930	-				-0.6
1,456,984	+		GFF1426	0.21	-1.0
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1,457,005	-		GFF1426	0.27	-1.0
1,457,005	-		GFF1426	0.27	-0.4
1,457,029	+		GFF1426	0.34	+0.2
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1,457,067	-		GFF1426	0.45	-1.7
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1,457,070	+		GFF1426	0.46	+0.1
1,457,070	+		GFF1426	0.46	-1.0
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1,457,080	-		GFF1426	0.49	-1.6
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1,457,082	+		GFF1426	0.49	+0.9
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1,457,109	+		GFF1426	0.57	+0.1
1,457,109	+		GFF1426	0.57	-0.2
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1,457,161	-		GFF1426	0.72	-0.1
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1,457,221	+		GFF1426	0.89	-1.2
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1,457,236	+				-0.4
1,457,252	-				-0.1
1,457,307	+				-0.2
1,457,480	+				-1.2
1,457,499	+				-0.1
1,457,509	+				-0.4
1,457,509	+				-1.8
1,457,509	+				-0.2
1,457,565	+				-1.4
1,457,573	-				+0.0
1,457,576	+				-0.0
1,457,576	+				+0.4
1,457,576	+				-1.2
1,457,576	+				-0.2
1,457,584	-				-1.1
1,457,598	-				+0.4
1,457,615	-				+1.0
1,457,625	+				-1.6
1,457,633	-				-0.0
1,457,677	+				+0.5
1,457,677	+				-2.1
1,457,677	+				-2.0
1,457,677	+				-0.2
1,457,677	+				-1.2
1,457,677	+				+0.4
1,457,677	+				+0.3
1,457,677	+				-0.5
1,457,677	+				+1.3
1,457,680	-				-0.4
1,457,682	+				-1.3
1,457,685	-				-1.2
1,457,685	-				-0.0
1,457,685	-				+0.5
1,457,685	-				-1.0
1,457,685	-				+0.3
1,457,685	-				-2.4
1,457,685	-				-0.4
1,457,685	-				-1.4
1,457,685	-				-0.4
1,457,690	-				-1.5
1,457,690	-				+1.0
1,457,690	-				+0.9
1,457,690	-				-0.2
1,457,700	+				-0.7
1,457,712	-				-2.0
1,457,730	-				-0.3