Strain Fitness in Sphingobium sp. HT1-2 around GFF1382

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,405,224	+		GFF1381	0.21	-0.6
1,405,224	+		GFF1381	0.21	-0.5
1,405,234	+		GFF1381	0.22	-1.5
1,405,236	-		GFF1381	0.22	-0.3
1,405,242	-		GFF1381	0.23	-0.5
1,405,242	-		GFF1381	0.23	-0.0
1,405,287	+		GFF1381	0.27	-0.1
1,405,313	-		GFF1381	0.29	+0.3
1,405,329	+		GFF1381	0.30	+0.1
1,405,337	-		GFF1381	0.31	+0.2
1,405,348	+		GFF1381	0.32	+0.4
1,405,356	-		GFF1381	0.33	-0.8
1,405,356	-		GFF1381	0.33	-0.4
1,405,356	-		GFF1381	0.33	-1.2
1,405,379	-		GFF1381	0.35	-1.0
1,405,415	+		GFF1381	0.38	+0.3
1,405,434	+		GFF1381	0.39	+0.4
1,405,445	-		GFF1381	0.40	-0.9
1,405,475	-		GFF1381	0.43	+0.2
1,405,513	+		GFF1381	0.46	+0.2
1,405,517	-		GFF1381	0.46	+0.2
1,405,568	+		GFF1381	0.51	+0.0
1,405,613	-		GFF1381	0.54	+0.0
1,405,630	+		GFF1381	0.56	-0.7
1,405,640	+		GFF1381	0.57	-1.1
1,405,648	-		GFF1381	0.57	-2.0
1,405,709	-		GFF1381	0.63	-1.0
1,405,721	-		GFF1381	0.64	+0.1
1,405,734	+		GFF1381	0.65	-0.3
1,405,735	+		GFF1381	0.65	-1.7
1,405,741	+		GFF1381	0.65	-1.0
1,405,742	-		GFF1381	0.65	+0.7
1,405,742	-		GFF1381	0.65	+0.2
1,405,756	+		GFF1381	0.67	+0.2
1,405,760	+		GFF1381	0.67	+0.7
1,405,760	+		GFF1381	0.67	-0.0
1,405,761	+		GFF1381	0.67	+0.8
1,405,761	+		GFF1381	0.67	-2.3
1,405,761	+		GFF1381	0.67	+1.2
1,405,761	+		GFF1381	0.67	+0.5
1,405,761	+		GFF1381	0.67	-0.2
1,405,761	+		GFF1381	0.67	-1.3
1,405,761	+		GFF1381	0.67	-0.6
1,405,761	+		GFF1381	0.67	-0.1
1,405,766	+		GFF1381	0.68	-0.5
1,405,766	+		GFF1381	0.68	+0.2
1,405,769	-		GFF1381	0.68	-1.9
1,405,769	-		GFF1381	0.68	-1.7
1,405,769	-		GFF1381	0.68	+0.0
1,405,769	-		GFF1381	0.68	+0.3
1,405,769	-		GFF1381	0.68	+0.1
1,405,769	-		GFF1381	0.68	+0.0
1,405,769	-		GFF1381	0.68	+0.5
1,405,769	-		GFF1381	0.68	-0.4
1,405,769	-		GFF1381	0.68	-1.5
1,405,769	-		GFF1381	0.68	-0.8
1,405,769	-		GFF1381	0.68	-0.4
1,405,769	-		GFF1381	0.68	-2.2
1,405,779	-		GFF1381	0.69	-1.3
1,405,785	+		GFF1381	0.69	+0.5
1,405,788	+		GFF1381	0.69	+0.6
1,405,793	+		GFF1381	0.70	-0.2
1,405,793	+		GFF1381	0.70	-2.1
1,405,793	+		GFF1381	0.70	-1.0
1,405,795	-		GFF1381	0.70	-0.3
1,405,801	-		GFF1381	0.71	-1.1
1,405,804	-		GFF1381	0.71	+1.5
1,405,806	+		GFF1381	0.71	-0.5
1,405,820	+		GFF1381	0.72	-0.7
1,405,820	+		GFF1381	0.72	+0.2
1,405,820	+		GFF1381	0.72	-0.0
1,405,820	+		GFF1381	0.72	-0.6
1,405,820	+		GFF1381	0.72	+0.4
1,405,823	+		GFF1381	0.72	+1.1
1,405,828	-		GFF1381	0.73	+0.9
1,405,828	-		GFF1381	0.73	-0.8
1,405,828	-		GFF1381	0.73	-1.4
1,405,828	-		GFF1381	0.73	+0.3
1,405,828	-		GFF1381	0.73	-2.0
1,405,828	-		GFF1381	0.73	-0.3
1,405,911	+		GFF1381	0.80	-0.0
1,405,912	-		GFF1381	0.80	-0.3
1,405,918	-		GFF1381	0.80	-0.1
1,405,923	+		GFF1381	0.81	-1.2
1,405,928	+		GFF1381	0.81	+0.2
1,405,931	-		GFF1381	0.82	+0.8
1,405,936	-		GFF1381	0.82	+0.5
1,405,936	-		GFF1381	0.82	+1.5
1,405,936	-		GFF1381	0.82	-1.2
1,405,936	-		GFF1381	0.82	+1.1
1,405,952	+		GFF1381	0.83	-0.6
1,405,952	+		GFF1381	0.83	-0.7
1,405,960	-		GFF1381	0.84	-0.5
1,405,982	-		GFF1381	0.86	-1.9
1,405,985	+		GFF1381	0.86	-2.5
1,405,988	+		GFF1381	0.86	-1.0
1,405,988	-		GFF1381	0.86	+0.3
1,406,014	+		GFF1381	0.89	+0.3
1,406,014	+		GFF1381	0.89	+0.3
1,406,037	+				-0.5
1,406,038	-				-0.5
1,406,047	+				-0.8
1,406,057	+				-2.4
1,406,057	+				+0.8
1,406,060	-				-0.7
1,406,065	-				-0.7
1,406,084	-				+0.2
1,406,104	+				-1.3
1,406,130	+				+0.4
1,406,130	+				-0.5
1,406,138	-				-1.3
1,406,138	-				+0.1
1,406,138	-				-1.3
1,406,138	-				-0.2
1,406,138	-				-0.8
1,406,138	-				-2.1
1,406,143	+				-0.5
1,406,189	+				+1.2
1,406,198	-				+0.3
1,406,247	+				+0.9
1,406,257	+				-0.2
1,406,265	-				-1.0
1,406,301	-		GFF1382	0.14	+0.3
1,406,307	-		GFF1382	0.15	-0.2
1,406,358	-		GFF1382	0.24	-0.0
1,406,371	+		GFF1382	0.26	-1.0
1,406,373	-		GFF1382	0.27	+0.1
1,406,378	-		GFF1382	0.27	-0.7
1,406,392	-		GFF1382	0.30	-0.1
1,406,397	+		GFF1382	0.31	+0.4
1,406,402	+		GFF1382	0.32	-2.5
1,406,407	+		GFF1382	0.32	-0.9
1,406,439	-		GFF1382	0.38	+0.2
1,406,439	-		GFF1382	0.38	+1.1
1,406,444	+		GFF1382	0.39	-0.7
1,406,447	+		GFF1382	0.39	+0.2
1,406,452	-		GFF1382	0.40	-0.3
1,406,452	-		GFF1382	0.40	-0.1
1,406,472	-		GFF1382	0.44	-0.8
1,406,481	+		GFF1382	0.45	+0.1
1,406,501	+		GFF1382	0.49	+0.5
1,406,501	+		GFF1382	0.49	-0.1
1,406,501	+		GFF1382	0.49	-1.5
1,406,501	+		GFF1382	0.49	+1.3
1,406,509	-		GFF1382	0.50	-0.6
1,406,541	-		GFF1382	0.56	+0.1
1,406,566	+		GFF1382	0.60	+1.2
1,406,576	+		GFF1382	0.62	-1.6
1,406,576	+		GFF1382	0.62	-0.2
1,406,576	+		GFF1382	0.62	-1.0
1,406,581	+		GFF1382	0.63	-0.5
1,406,581	+		GFF1382	0.63	-0.1
1,406,589	-		GFF1382	0.64	+0.3
1,406,589	-		GFF1382	0.64	+1.2
1,406,594	-		GFF1382	0.65	-0.7
1,406,617	+		GFF1382	0.69	-0.3
1,406,617	+		GFF1382	0.69	+0.2
1,406,617	+		GFF1382	0.69	+0.4
1,406,617	+		GFF1382	0.69	-0.0
1,406,625	-		GFF1382	0.70	+1.0
1,406,625	-		GFF1382	0.70	-0.8
1,406,625	-		GFF1382	0.70	-0.4
1,406,625	-		GFF1382	0.70	+0.4
1,406,685	+		GFF1382	0.80	-2.2
1,406,702	+		GFF1382	0.83	-0.5
1,406,707	+		GFF1382	0.84	-0.9
1,406,707	+		GFF1382	0.84	+0.0
1,406,710	-		GFF1382	0.85	-0.7
1,406,710	-		GFF1382	0.85	-0.1
1,406,710	-		GFF1382	0.85	+0.7
1,406,726	+		GFF1382	0.88	-2.9
1,406,726	+		GFF1382	0.88	+0.6
1,406,742	+				-0.3
1,406,747	+				-0.8
1,406,748	+				+1.3
1,406,748	+				+2.1
1,406,748	+				-0.5
1,406,748	+				-0.6
1,406,756	-				-0.3
1,406,756	-				-1.2
1,406,756	-				-0.2
1,406,756	-				-1.2
1,406,756	-				-0.8
1,406,758	+				-0.0
1,406,758	+				-0.6
1,406,765	+				-0.2
1,406,766	-				+0.5
1,406,766	-				+1.2
1,406,773	-				-1.8
1,406,781	+				-0.9
1,406,809	+				-0.1
1,406,842	+				-0.2
1,406,851	-				+0.3
1,406,867	-				+0.4
1,406,878	+				-0.2
1,406,880	+				-1.3
1,406,880	+				-0.6
1,406,895	+		GFF1383	0.11	-1.7
1,406,895	+		GFF1383	0.11	+0.2
1,406,898	-		GFF1383	0.11	-0.2
1,406,903	-		GFF1383	0.12	-0.4
1,406,907	+		GFF1383	0.12	+0.5
1,406,909	-		GFF1383	0.12	-0.5
1,406,912	+		GFF1383	0.13	+0.2
1,406,912	+		GFF1383	0.13	-0.5
1,406,912	+		GFF1383	0.13	-0.4
1,406,912	+		GFF1383	0.13	-1.4
1,406,912	+		GFF1383	0.13	+1.6
1,406,912	+		GFF1383	0.13	+0.7
1,406,917	+		GFF1383	0.13	+0.7
1,406,920	-		GFF1383	0.13	+0.2
1,406,920	-		GFF1383	0.13	-0.5
1,406,920	-		GFF1383	0.13	-1.3
1,406,920	-		GFF1383	0.13	+0.4
1,406,920	-		GFF1383	0.13	+1.2
1,406,920	-		GFF1383	0.13	-0.9
1,406,920	-		GFF1383	0.13	-0.9
1,406,920	-		GFF1383	0.13	-1.3
1,406,920	-		GFF1383	0.13	-1.0
1,406,920	-		GFF1383	0.13	-0.3
1,406,920	-		GFF1383	0.13	+0.0
1,406,925	+		GFF1383	0.14	+0.9
1,406,925	-		GFF1383	0.14	-1.5
1,406,925	-		GFF1383	0.14	-1.0
1,406,940	+		GFF1383	0.15	-0.0
1,406,948	-		GFF1383	0.16	-0.4
1,407,000	+		GFF1383	0.22	+0.2
1,407,000	+		GFF1383	0.22	-0.8
1,407,000	+		GFF1383	0.22	-0.0
1,407,011	+		GFF1383	0.23	+0.3
1,407,011	+		GFF1383	0.23	+1.1
1,407,014	-		GFF1383	0.23	-0.6
1,407,031	+		GFF1383	0.25	-0.0
1,407,032	+		GFF1383	0.25	-1.0
1,407,066	-		GFF1383	0.29	-0.9
1,407,066	-		GFF1383	0.29	-1.5
1,407,090	+		GFF1383	0.31	+0.5
1,407,093	+		GFF1383	0.32	-1.1
1,407,103	+		GFF1383	0.33	-2.1
1,407,103	+		GFF1383	0.33	-0.5
1,407,123	+		GFF1383	0.35	-0.9
1,407,131	-		GFF1383	0.36	-0.0
1,407,154	-		GFF1383	0.38	-1.3
1,407,164	-		GFF1383	0.39	-0.8
1,407,164	-		GFF1383	0.39	-1.7
1,407,168	-		GFF1383	0.40	+0.7
1,407,187	+		GFF1383	0.42	+0.6
1,407,190	-		GFF1383	0.42	-0.4
1,407,190	-		GFF1383	0.42	-0.3
1,407,209	+		GFF1383	0.44	+0.1
1,407,217	-		GFF1383	0.45	-0.7
1,407,233	-		GFF1383	0.47	-1.1
1,407,239	+		GFF1383	0.47	-0.6
1,407,248	+		GFF1383	0.48	-2.6
1,407,248	+		GFF1383	0.48	-1.4
1,407,307	-		GFF1383	0.54	+0.0
1,407,309	+		GFF1383	0.55	-2.4
1,407,309	+		GFF1383	0.55	-0.4
1,407,309	+		GFF1383	0.55	-0.1
1,407,309	+		GFF1383	0.55	-1.4
1,407,309	+		GFF1383	0.55	-1.2
1,407,314	+		GFF1383	0.55	+0.6
1,407,317	-		GFF1383	0.56	-1.2
1,407,317	-		GFF1383	0.56	-2.1
1,407,322	-		GFF1383	0.56	-1.4
1,407,358	+		GFF1383	0.60	-0.1
1,407,376	-		GFF1383	0.62	-0.0
1,407,376	-		GFF1383	0.62	+1.0
1,407,378	-		GFF1383	0.62	-0.6
1,407,391	-		GFF1383	0.63	-1.5
1,407,398	+		GFF1383	0.64	-0.6
1,407,398	+		GFF1383	0.64	-1.7
1,407,398	+		GFF1383	0.64	-0.1
1,407,406	+		GFF1383	0.65	+0.5
1,407,406	-		GFF1383	0.65	+0.6
1,407,406	-		GFF1383	0.65	-1.8
1,407,406	-		GFF1383	0.65	-1.5
1,407,406	-		GFF1383	0.65	-1.1
1,407,406	-		GFF1383	0.65	+0.1
1,407,414	-		GFF1383	0.66	-1.7
1,407,414	-		GFF1383	0.66	-0.6
1,407,423	+		GFF1383	0.67	-1.0
1,407,428	+		GFF1383	0.67	+0.3
1,407,429	-		GFF1383	0.67	-2.0
1,407,431	-		GFF1383	0.68	+0.5
1,407,436	+		GFF1383	0.68	+0.6
1,407,436	-		GFF1383	0.68	-0.3
1,407,436	-		GFF1383	0.68	-2.3
1,407,438	+		GFF1383	0.68	-1.5
1,407,438	+		GFF1383	0.68	-0.7
1,407,438	+		GFF1383	0.68	+0.7
1,407,438	+		GFF1383	0.68	-0.0
1,407,438	+		GFF1383	0.68	-2.5
1,407,439	-		GFF1383	0.68	-0.6
1,407,441	-		GFF1383	0.69	+0.7
1,407,446	-		GFF1383	0.69	-1.5
1,407,446	-		GFF1383	0.69	+0.8
1,407,446	-		GFF1383	0.69	-2.7
1,407,446	-		GFF1383	0.69	+0.3
1,407,446	-		GFF1383	0.69	-0.4
1,407,446	-		GFF1383	0.69	+1.1
1,407,462	-		GFF1383	0.71	+0.6
1,407,470	-		GFF1383	0.72	-1.3
1,407,476	-		GFF1383	0.72	-0.1
1,407,476	-		GFF1383	0.72	+1.1
1,407,476	-		GFF1383	0.72	-1.0
1,407,516	-		GFF1383	0.77	-1.3
1,407,522	-		GFF1383	0.77	-0.5
1,407,534	+		GFF1383	0.79	+1.2
1,407,536	+		GFF1383	0.79	-0.4
1,407,536	+		GFF1383	0.79	+0.8
1,407,541	+		GFF1383	0.79	-0.1
1,407,544	-		GFF1383	0.80	+0.1
1,407,544	-		GFF1383	0.80	-0.2
1,407,553	+		GFF1383	0.81	+0.8
1,407,559	-		GFF1383	0.81	-0.8
1,407,586	+		GFF1383	0.84	+0.9
1,407,609	+		GFF1383	0.87	+0.5
1,407,609	+		GFF1383	0.87	-1.1
1,407,610	+		GFF1383	0.87	+0.8
1,407,627	-		GFF1383	0.88	-1.3
1,407,637	-		GFF1383	0.89	+0.1
1,407,642	+				-0.7
1,407,644	+				-0.4
1,407,644	+				-0.3
1,407,650	-				+0.1
1,407,652	-				+0.9
1,407,652	-				-0.4
1,407,657	-				-0.5
1,407,671	+				-0.1
1,407,676	+				-0.4
1,407,679	-				-1.0
1,407,679	-				+0.3
1,407,689	-				-0.2
1,407,693	+				-1.0
1,407,701	-				-0.2
1,407,710	+				+0.3
1,407,710	+				-0.6
1,407,710	+				+0.3
1,407,718	-				+1.6
1,407,718	-				+0.8
1,407,723	-				+0.0
1,407,724	-				+0.9
1,407,728	-				+0.4
1,407,733	+				+0.4
1,407,733	+				-1.1
1,407,741	-				+0.1
1,407,741	-				+0.4
1,407,741	-				+0.5
1,407,741	-				+0.5
1,407,741	-				-1.0
1,407,741	-				-0.3
1,407,741	-				+0.7
1,407,741	-				-1.6
1,407,757	+				-0.8
1,407,783	-				-0.7
1,407,785	+				+1.0
1,407,788	-				-0.1
1,407,789	-				-1.9
1,407,795	-				-1.0
1,407,797	+				+0.3