Strain Fitness in Sphingobium sp. HT1-2 around GFF1374

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,396,580	-		GFF1373	0.20	-0.3
1,396,610	+		GFF1373	0.22	+0.2
1,396,630	+		GFF1373	0.24	+0.9
1,396,630	+		GFF1373	0.24	+0.3
1,396,637	+		GFF1373	0.25	-0.9
1,396,645	-		GFF1373	0.25	+0.1
1,396,647	+		GFF1373	0.26	+0.3
1,396,647	+		GFF1373	0.26	-0.2
1,396,651	-		GFF1373	0.26	-0.3
1,396,655	+		GFF1373	0.26	-1.4
1,396,655	-		GFF1373	0.26	-1.1
1,396,655	-		GFF1373	0.26	-0.3
1,396,655	-		GFF1373	0.26	-0.5
1,396,663	-		GFF1373	0.27	+0.1
1,396,691	+		GFF1373	0.29	+0.5
1,396,697	-		GFF1373	0.30	+0.3
1,396,699	-		GFF1373	0.30	-0.4
1,396,707	+		GFF1373	0.31	-0.9
1,396,707	+		GFF1373	0.31	-1.3
1,396,707	+		GFF1373	0.31	-0.3
1,396,715	-		GFF1373	0.31	+0.3
1,396,758	+		GFF1373	0.35	-0.2
1,396,800	-		GFF1373	0.39	-0.7
1,396,815	+		GFF1373	0.40	-0.9
1,396,815	-		GFF1373	0.40	+0.4
1,396,827	+		GFF1373	0.41	+0.2
1,396,827	+		GFF1373	0.41	-0.3
1,396,835	-		GFF1373	0.42	+0.8
1,396,836	+		GFF1373	0.42	-0.6
1,396,842	+		GFF1373	0.42	-0.7
1,396,844	-		GFF1373	0.43	+0.1
1,396,844	-		GFF1373	0.43	-1.6
1,396,849	+		GFF1373	0.43	+0.9
1,396,850	+		GFF1373	0.43	-1.4
1,396,888	-		GFF1373	0.46	+0.6
1,396,888	-		GFF1373	0.46	+0.7
1,396,888	-		GFF1373	0.46	-2.3
1,396,893	+		GFF1373	0.47	+0.1
1,396,893	+		GFF1373	0.47	+1.2
1,396,901	-		GFF1373	0.48	-1.0
1,396,921	-		GFF1373	0.49	-0.4
1,396,927	-		GFF1373	0.50	-0.3
1,396,952	+		GFF1373	0.52	-0.2
1,396,960	-		GFF1373	0.53	+0.9
1,396,966	+		GFF1373	0.53	-1.4
1,396,969	-		GFF1373	0.53	+0.3
1,396,971	+		GFF1373	0.54	-0.6
1,396,971	+		GFF1373	0.54	+0.6
1,396,974	-		GFF1373	0.54	+0.6
1,396,979	-		GFF1373	0.54	-0.6
1,396,982	+		GFF1373	0.55	+0.5
1,396,982	+		GFF1373	0.55	-1.1
1,397,025	+		GFF1373	0.58	-0.5
1,397,025	+		GFF1373	0.58	+0.6
1,397,041	+		GFF1373	0.60	+1.0
1,397,049	-		GFF1373	0.60	-1.3
1,397,068	-		GFF1373	0.62	-0.2
1,397,101	+		GFF1373	0.65	-0.6
1,397,103	+		GFF1373	0.65	-1.0
1,397,103	+		GFF1373	0.65	-1.7
1,397,103	+		GFF1373	0.65	+0.4
1,397,103	+		GFF1373	0.65	-1.8
1,397,111	-		GFF1373	0.66	+0.7
1,397,111	-		GFF1373	0.66	-0.1
1,397,111	-		GFF1373	0.66	+0.0
1,397,117	-		GFF1373	0.66	-2.5
1,397,124	+		GFF1373	0.67	+1.8
1,397,127	-		GFF1373	0.67	+0.5
1,397,137	-		GFF1373	0.68	-3.3
1,397,139	+		GFF1373	0.68	-1.0
1,397,162	+		GFF1373	0.70	-1.7
1,397,170	-		GFF1373	0.71	-1.0
1,397,189	+		GFF1373	0.72	+0.3
1,397,189	+		GFF1373	0.72	+0.7
1,397,196	-		GFF1373	0.73	+0.0
1,397,201	-		GFF1373	0.74	+0.2
1,397,209	+		GFF1373	0.74	+0.7
1,397,217	-		GFF1373	0.75	+0.6
1,397,224	+		GFF1373	0.75	-0.7
1,397,263	+		GFF1373	0.79	-0.6
1,397,271	-		GFF1373	0.80	-0.2
1,397,271	-		GFF1373	0.80	-2.0
1,397,276	-		GFF1373	0.80	-0.4
1,397,286	+		GFF1373	0.81	-0.6
1,397,286	+		GFF1373	0.81	+0.4
1,397,286	+		GFF1373	0.81	+0.1
1,397,294	-		GFF1373	0.82	-0.9
1,397,294	-		GFF1373	0.82	-1.7
1,397,294	-		GFF1373	0.82	-0.3
1,397,298	-		GFF1373	0.82	-1.9
1,397,351	+		GFF1373	0.86	-2.0
1,397,382	-		GFF1373	0.89	-0.0
1,397,400	-				-0.6
1,397,409	-				+1.9
1,397,414	-				+0.5
1,397,438	-				-0.5
1,397,496	-				-1.1
1,397,501	+				+0.2
1,397,506	+				+0.8
1,397,516	+				+1.3
1,397,526	+				-0.5
1,397,534	-				-0.7
1,397,534	-				-0.3
1,397,566	+				+1.1
1,397,636	-				+0.0
1,397,638	-				-0.0
1,397,639	+				-2.2
1,397,640	+				+0.1
1,397,641	-				-2.3
1,397,654	+				-0.6
1,397,654	+				+0.3
1,397,654	+				+0.2
1,397,662	-		GFF1374	0.11	-1.5
1,397,662	-		GFF1374	0.11	-2.4
1,397,665	+		GFF1374	0.11	+1.1
1,397,683	-		GFF1374	0.12	-1.7
1,397,693	-		GFF1374	0.13	-1.3
1,397,695	-		GFF1374	0.13	+0.1
1,397,720	+		GFF1374	0.15	-1.1
1,397,737	+		GFF1374	0.17	+0.7
1,397,745	-		GFF1374	0.17	+0.1
1,397,747	+		GFF1374	0.18	+0.8
1,397,749	+		GFF1374	0.18	+0.3
1,397,760	+		GFF1374	0.19	+0.4
1,397,800	-		GFF1374	0.22	-0.2
1,397,800	-		GFF1374	0.22	-0.6
1,397,808	-		GFF1374	0.23	+0.8
1,397,808	-		GFF1374	0.23	-0.4
1,397,824	+		GFF1374	0.24	+0.1
1,397,829	+		GFF1374	0.24	-1.1
1,397,837	+		GFF1374	0.25	-1.4
1,397,837	-		GFF1374	0.25	-0.9
1,397,845	-		GFF1374	0.26	+0.6
1,397,853	+		GFF1374	0.27	-1.6
1,397,876	+		GFF1374	0.28	-0.4
1,397,877	+		GFF1374	0.28	+0.1
1,397,877	+		GFF1374	0.28	+0.3
1,397,884	-		GFF1374	0.29	+0.5
1,397,885	-		GFF1374	0.29	-0.1
1,397,885	-		GFF1374	0.29	-0.7
1,397,888	+		GFF1374	0.29	-0.2
1,397,918	+		GFF1374	0.32	+0.5
1,397,918	+		GFF1374	0.32	+0.9
1,397,918	+		GFF1374	0.32	-1.3
1,397,926	-		GFF1374	0.33	+1.4
1,397,926	-		GFF1374	0.33	+0.7
1,397,926	-		GFF1374	0.33	-1.4
1,397,955	-		GFF1374	0.35	-2.2
1,397,958	+		GFF1374	0.35	-2.8
1,397,958	+		GFF1374	0.35	+0.6
1,397,958	+		GFF1374	0.35	-0.0
1,397,958	+		GFF1374	0.35	-2.0
1,397,966	-		GFF1374	0.36	-0.5
1,397,966	-		GFF1374	0.36	-0.5
1,398,003	+		GFF1374	0.39	+0.6
1,398,003	+		GFF1374	0.39	+0.1
1,398,007	-		GFF1374	0.39	+0.5
1,398,011	-		GFF1374	0.40	-2.0
1,398,016	+		GFF1374	0.40	-0.5
1,398,047	+		GFF1374	0.43	-0.0
1,398,056	+		GFF1374	0.43	-0.3
1,398,069	-		GFF1374	0.45	-0.7
1,398,069	-		GFF1374	0.45	-1.1
1,398,069	-		GFF1374	0.45	-1.4
1,398,073	+		GFF1374	0.45	+0.1
1,398,104	+		GFF1374	0.47	-0.9
1,398,116	-		GFF1374	0.48	-0.0
1,398,121	-		GFF1374	0.49	+0.1
1,398,121	-		GFF1374	0.49	-0.5
1,398,150	-		GFF1374	0.51	-0.6
1,398,157	+		GFF1374	0.52	+0.8
1,398,167	+		GFF1374	0.53	+0.1
1,398,167	+		GFF1374	0.53	+0.1
1,398,167	+		GFF1374	0.53	-1.4
1,398,170	-		GFF1374	0.53	+1.0
1,398,175	-		GFF1374	0.53	-0.6
1,398,175	-		GFF1374	0.53	+0.3
1,398,185	+		GFF1374	0.54	-0.0
1,398,197	+		GFF1374	0.55	-0.8
1,398,198	+		GFF1374	0.55	-1.9
1,398,205	-		GFF1374	0.56	+0.7
1,398,205	-		GFF1374	0.56	+0.5
1,398,206	-		GFF1374	0.56	-1.8
1,398,214	-		GFF1374	0.57	+0.2
1,398,242	+		GFF1374	0.59	-1.2
1,398,242	+		GFF1374	0.59	-2.1
1,398,242	+		GFF1374	0.59	-0.4
1,398,242	+		GFF1374	0.59	-0.4
1,398,242	+		GFF1374	0.59	-0.9
1,398,242	+		GFF1374	0.59	-1.5
1,398,242	+		GFF1374	0.59	+0.8
1,398,242	+		GFF1374	0.59	+0.1
1,398,248	-		GFF1374	0.59	-0.5
1,398,250	-		GFF1374	0.60	-0.4
1,398,250	-		GFF1374	0.60	-0.4
1,398,250	-		GFF1374	0.60	-0.3
1,398,250	-		GFF1374	0.60	+1.3
1,398,250	-		GFF1374	0.60	-0.7
1,398,277	-		GFF1374	0.62	+0.5
1,398,288	+		GFF1374	0.63	-0.2
1,398,332	+		GFF1374	0.66	-0.7
1,398,340	-		GFF1374	0.67	+0.8
1,398,340	-		GFF1374	0.67	-1.4
1,398,340	-		GFF1374	0.67	+0.3
1,398,341	+		GFF1374	0.67	-1.0
1,398,353	-		GFF1374	0.68	-0.3
1,398,360	-		GFF1374	0.69	+0.3
1,398,368	-		GFF1374	0.69	+0.4
1,398,372	+		GFF1374	0.70	+0.1
1,398,372	+		GFF1374	0.70	+0.6
1,398,377	+		GFF1374	0.70	-0.5
1,398,379	+		GFF1374	0.70	+0.4
1,398,380	-		GFF1374	0.70	+1.1
1,398,387	-		GFF1374	0.71	-1.1
1,398,395	+		GFF1374	0.72	+0.0
1,398,415	+		GFF1374	0.73	-1.1
1,398,421	+		GFF1374	0.74	+0.1
1,398,429	-		GFF1374	0.74	-2.0
1,398,435	+		GFF1374	0.75	+0.9
1,398,436	+		GFF1374	0.75	-0.5
1,398,436	+		GFF1374	0.75	+1.1
1,398,455	+		GFF1374	0.77	-0.1
1,398,459	+		GFF1374	0.77	+0.3
1,398,459	+		GFF1374	0.77	-2.5
1,398,460	+		GFF1374	0.77	-0.4
1,398,465	+		GFF1374	0.78	+0.4
1,398,470	+		GFF1374	0.78	-0.7
1,398,473	-		GFF1374	0.78	+0.4
1,398,475	+		GFF1374	0.78	+0.5
1,398,475	+		GFF1374	0.78	-1.5
1,398,495	+		GFF1374	0.80	+1.0
1,398,502	+		GFF1374	0.81	+0.1
1,398,503	-		GFF1374	0.81	+0.2
1,398,515	+		GFF1374	0.82	-1.0
1,398,516	+		GFF1374	0.82	+1.3
1,398,516	+		GFF1374	0.82	-0.4
1,398,516	+		GFF1374	0.82	-0.9
1,398,516	+		GFF1374	0.82	+0.5
1,398,516	+		GFF1374	0.82	+1.0
1,398,523	-		GFF1374	0.82	-1.0
1,398,523	-		GFF1374	0.82	+0.6
1,398,524	-		GFF1374	0.82	-1.0
1,398,524	-		GFF1374	0.82	-0.5
1,398,524	-		GFF1374	0.82	-0.4
1,398,524	-		GFF1374	0.82	-0.9
1,398,524	-		GFF1374	0.82	+0.9
1,398,524	-		GFF1374	0.82	-1.5
1,398,526	+		GFF1374	0.83	+0.2
1,398,526	+		GFF1374	0.83	+0.1
1,398,526	+		GFF1374	0.83	-1.1
1,398,527	+		GFF1374	0.83	-0.6
1,398,529	-		GFF1374	0.83	-0.2
1,398,533	-		GFF1374	0.83	-0.7
1,398,534	+		GFF1374	0.83	+0.8
1,398,534	+		GFF1374	0.83	+1.4
1,398,534	+		GFF1374	0.83	-0.4
1,398,534	+		GFF1374	0.83	+0.1
1,398,534	+		GFF1374	0.83	+0.9
1,398,534	+		GFF1374	0.83	-0.4
1,398,534	-		GFF1374	0.83	-0.4
1,398,534	-		GFF1374	0.83	+0.6
1,398,534	-		GFF1374	0.83	+0.5
1,398,534	-		GFF1374	0.83	+1.8
1,398,542	-		GFF1374	0.84	+0.3
1,398,560	+		GFF1374	0.85	+0.8
1,398,567	-		GFF1374	0.86	-0.9
1,398,567	-		GFF1374	0.86	-0.4
1,398,567	-		GFF1374	0.86	-1.5
1,398,568	-		GFF1374	0.86	+0.0
1,398,594	+		GFF1374	0.88	-0.7
1,398,624	-				-1.8
1,398,624	-				+0.5
1,398,645	+				-0.0
1,398,679	+				-0.1
1,398,687	-				+0.9
1,398,696	+				-1.5
1,398,697	+				-0.0
1,398,704	-				-0.9
1,398,705	-				+0.8
1,398,705	-				-0.2
1,398,709	-				-0.3
1,398,709	-				-2.2
1,398,728	+				-0.3
1,398,728	+				+0.1
1,398,733	+				-1.8
1,398,736	-				+0.3
1,398,736	-				-2.5
1,398,753	+				+0.8
1,398,753	+				+0.7
1,398,753	+				-0.1
1,398,761	-				-1.9
1,398,761	-				-0.3
1,398,761	-				-0.1
1,398,761	-				+0.4
1,398,764	+				+0.9
1,398,772	-				-1.1
1,398,772	-				-0.3
1,398,774	+				-0.5
1,398,782	-				+1.4
1,398,826	+				-1.3
1,398,855	-				+0.6
1,398,855	-				-0.4
1,398,863	-				+0.2
1,398,865	-				+0.0
1,398,872	-				+0.2
1,398,873	-				-0.4
1,398,877	+				-0.0
1,398,879	-				+0.2
1,398,915	+		GFF1375	0.12	-1.8
1,398,915	+		GFF1375	0.12	-0.3
1,398,915	+		GFF1375	0.12	+0.4
1,398,915	+		GFF1375	0.12	+2.2
1,398,923	+		GFF1375	0.13	-0.7
1,398,923	-		GFF1375	0.13	-0.3
1,398,923	-		GFF1375	0.13	-0.7
1,398,923	-		GFF1375	0.13	-0.8
1,398,935	+		GFF1375	0.15	-0.3
1,398,956	+		GFF1375	0.17	-0.2
1,398,968	+		GFF1375	0.18	-0.6
1,398,976	-		GFF1375	0.19	-0.1
1,398,978	+		GFF1375	0.19	+0.6
1,398,993	+		GFF1375	0.21	+0.4
1,398,997	+		GFF1375	0.22	+1.1
1,398,997	+		GFF1375	0.22	+0.1
1,398,997	+		GFF1375	0.22	-0.6
1,399,008	+		GFF1375	0.23	+0.2
1,399,008	+		GFF1375	0.23	-0.9
1,399,009	-		GFF1375	0.23	-1.6
1,399,014	-		GFF1375	0.23	+0.5
1,399,016	-		GFF1375	0.24	+0.4
1,399,028	+		GFF1375	0.25	-1.3
1,399,039	-		GFF1375	0.26	-0.5
1,399,050	+		GFF1375	0.27	-0.3
1,399,050	+		GFF1375	0.27	-0.2
1,399,051	+		GFF1375	0.28	+0.7
1,399,063	-		GFF1375	0.29	-0.7
1,399,066	+		GFF1375	0.29	+0.9
1,399,070	-		GFF1375	0.30	-0.1
1,399,071	+		GFF1375	0.30	-0.7
1,399,074	-		GFF1375	0.30	-0.6
1,399,079	-		GFF1375	0.31	+0.9
1,399,101	+		GFF1375	0.33	-0.9
1,399,107	+		GFF1375	0.34	-0.4
1,399,152	-		GFF1375	0.39	-0.2
1,399,166	+		GFF1375	0.40	-2.3
1,399,166	+		GFF1375	0.40	+0.8
1,399,166	+		GFF1375	0.40	-1.0
1,399,185	+		GFF1375	0.42	+0.4
1,399,196	+		GFF1375	0.44	-0.4
1,399,204	-		GFF1375	0.45	-0.3
1,399,206	+		GFF1375	0.45	-0.5
1,399,212	+		GFF1375	0.45	+0.3
1,399,214	-		GFF1375	0.46	-0.4
1,399,214	-		GFF1375	0.46	-1.4
1,399,214	-		GFF1375	0.46	-0.8
1,399,214	-		GFF1375	0.46	-1.5
1,399,215	-		GFF1375	0.46	+0.5
1,399,220	-		GFF1375	0.46	+0.5
1,399,227	+		GFF1375	0.47	-0.4
1,399,227	+		GFF1375	0.47	-0.4
1,399,233	+		GFF1375	0.48	-0.2
1,399,233	+		GFF1375	0.48	-2.0
1,399,233	+		GFF1375	0.48	-0.5
1,399,233	+		GFF1375	0.48	-2.3
1,399,299	+		GFF1375	0.55	-0.5
1,399,299	+		GFF1375	0.55	-1.0
1,399,299	+		GFF1375	0.55	-0.5
1,399,299	+		GFF1375	0.55	-2.0
1,399,307	-		GFF1375	0.56	+0.8
1,399,307	-		GFF1375	0.56	+0.4
1,399,342	+		GFF1375	0.60	+0.7
1,399,342	+		GFF1375	0.60	-1.5
1,399,344	+		GFF1375	0.60	+1.5
1,399,364	+		GFF1375	0.62	-1.0
1,399,365	-		GFF1375	0.63	+0.4
1,399,365	-		GFF1375	0.63	-0.4
1,399,372	-		GFF1375	0.63	-0.1
1,399,375	+		GFF1375	0.64	-0.5
1,399,393	+		GFF1375	0.66	-0.4
1,399,420	+		GFF1375	0.69	+0.0
1,399,438	-		GFF1375	0.71	+0.4
1,399,473	+		GFF1375	0.75	-2.0
1,399,473	+		GFF1375	0.75	+0.4
1,399,481	+		GFF1375	0.75	+1.3
1,399,481	+		GFF1375	0.75	-1.0
1,399,481	-		GFF1375	0.75	-1.5
1,399,489	-		GFF1375	0.76	-0.4
1,399,489	-		GFF1375	0.76	+0.5
1,399,500	+		GFF1375	0.78	+0.2
1,399,508	-		GFF1375	0.78	-0.1
1,399,508	-		GFF1375	0.78	-0.5
1,399,541	-		GFF1375	0.82	-0.2
1,399,589	+		GFF1375	0.88	-0.0
1,399,597	-		GFF1375	0.88	+1.0
1,399,624	-				+0.5
1,399,641	+				+0.1
1,399,641	+				-1.0
1,399,641	+				-1.0
1,399,641	+				+0.3
1,399,641	+				-1.1
1,399,641	+				-0.5
1,399,649	-				-0.3
1,399,649	-				+0.6
1,399,649	-				-0.4
1,399,649	-				-0.7
1,399,659	-				+0.0
1,399,660	+				-0.5