Strain Fitness in Sphingobium sp. HT1-2 around GFF1349

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,368,543	-		GFF1347	0.69	+0.2
1,368,568	+		GFF1347	0.75	-2.4
1,368,568	+		GFF1347	0.75	-1.3
1,368,576	-		GFF1347	0.77	+1.0
1,368,583	-		GFF1347	0.79	-2.5
1,368,588	-		GFF1347	0.80	+0.6
1,368,633	-				-0.4
1,368,633	-				+0.2
1,368,633	-				+0.4
1,368,641	+				-0.3
1,368,646	+				+0.0
1,368,646	+				-1.0
1,368,646	+				+0.6
1,368,649	-				-2.1
1,368,649	-				-0.6
1,368,649	-				-0.2
1,368,649	-				+0.5
1,368,654	-				-1.5
1,368,654	-				-0.3
1,368,654	-				-0.6
1,368,654	-				-0.3
1,368,654	-				+1.0
1,368,654	-				-1.6
1,368,654	-				+1.5
1,368,658	-				-0.1
1,368,660	+				+0.6
1,368,664	-				+0.8
1,368,665	-				+0.8
1,368,668	-				-0.4
1,368,668	-				-0.1
1,368,669	+				+0.0
1,368,669	+				-0.7
1,368,678	+				+0.6
1,368,679	+				-0.4
1,368,682	-				+0.7
1,368,682	-				+2.2
1,368,691	-				-1.6
1,368,701	+		GFF1348	0.11	+0.2
1,368,715	+		GFF1348	0.19	+0.1
1,368,735	+		GFF1348	0.32	+0.0
1,368,735	+		GFF1348	0.32	-0.7
1,368,735	+		GFF1348	0.32	-0.6
1,368,735	+		GFF1348	0.32	-1.4
1,368,735	+		GFF1348	0.32	-1.5
1,368,735	+		GFF1348	0.32	-2.2
1,368,744	-		GFF1348	0.37	-2.7
1,368,784	+		GFF1348	0.61	-0.8
1,368,795	-		GFF1348	0.68	-0.9
1,368,823	-		GFF1348	0.85	-0.1
1,368,823	-		GFF1348	0.85	-0.1
1,368,848	+				+1.8
1,368,895	-				+0.1
1,368,974	-				-0.9
1,368,984	-				+0.9
1,368,992	-				-1.2
1,369,014	+				-0.0
1,369,099	-				+1.9
1,369,103	+				+0.7
1,369,108	+				-0.6
1,369,224	-				-0.5
1,369,224	-				-0.9
1,369,332	+				-1.9
1,369,352	+				+1.0
1,369,360	-				+1.3
1,369,363	-				-1.1
1,369,382	+				-1.2
1,369,396	+				+0.2
1,369,411	-				-0.2
1,369,413	+				+0.7
1,369,418	+				-0.3
1,369,418	+				+0.4
1,369,418	+				-0.4
1,369,418	+				+0.3
1,369,421	-				-0.6
1,369,421	-				-0.4
1,369,421	-				-1.1
1,369,426	-				-1.6
1,369,426	-				-1.3
1,369,433	+				-1.5
1,369,440	+				+1.1
1,369,440	+				-0.4
1,369,441	-				+1.1
1,369,452	+				-1.3
1,369,460	-				-1.9
1,369,462	+				+0.5
1,369,464	+				+0.1
1,369,468	-				-1.2
1,369,474	+				+1.4
1,369,490	+				+1.1
1,369,497	+				+0.8
1,369,507	+				+1.8
1,369,509	-				-2.0
1,369,530	+				-2.2
1,369,546	+				-0.4
1,369,558	+				+0.3
1,369,563	+				+0.9
1,369,566	-				-0.2
1,369,566	-				-0.3
1,369,566	-				-0.2
1,369,582	-				-0.7
1,369,585	-				+0.6
1,369,592	-				-0.1
1,369,594	+				-0.7
1,369,594	+				-0.6
1,369,602	-		GFF1349	0.11	-0.6
1,369,602	-		GFF1349	0.11	+0.2
1,369,610	-		GFF1349	0.12	+0.4
1,369,637	+		GFF1349	0.17	-1.2
1,369,656	-		GFF1349	0.20	-0.4
1,369,659	+		GFF1349	0.21	+0.6
1,369,664	+		GFF1349	0.22	-0.3
1,369,666	+		GFF1349	0.22	+0.4
1,369,677	-		GFF1349	0.24	-1.3
1,369,692	-		GFF1349	0.27	+0.3
1,369,751	+		GFF1349	0.37	-1.1
1,369,751	+		GFF1349	0.37	-0.1
1,369,754	-		GFF1349	0.38	-2.1
1,369,767	+		GFF1349	0.40	+0.5
1,369,767	+		GFF1349	0.40	-1.2
1,369,767	+		GFF1349	0.40	-1.4
1,369,775	-		GFF1349	0.41	+0.0
1,369,812	+		GFF1349	0.48	-0.8
1,369,820	-		GFF1349	0.49	-0.2
1,369,820	-		GFF1349	0.49	-0.2
1,369,820	-		GFF1349	0.49	+0.9
1,369,820	-		GFF1349	0.49	+1.0
1,369,830	-		GFF1349	0.51	-0.3
1,369,857	-		GFF1349	0.55	+0.4
1,369,861	+		GFF1349	0.56	-1.5
1,369,906	-		GFF1349	0.64	-1.9
1,369,913	-		GFF1349	0.65	+0.9
1,369,921	-		GFF1349	0.67	+0.5
1,369,936	-		GFF1349	0.69	+1.1
1,369,945	-		GFF1349	0.71	-1.1
1,369,953	+		GFF1349	0.72	-1.9
1,369,961	-		GFF1349	0.74	-0.2
1,369,961	-		GFF1349	0.74	+0.3
1,370,013	+		GFF1349	0.83	+0.2
1,370,018	+		GFF1349	0.84	-2.7
1,370,018	+		GFF1349	0.84	+0.6
1,370,026	-		GFF1349	0.85	+0.4
1,370,043	-		GFF1349	0.88	+0.3
1,370,082	+				-0.2
1,370,105	+				-1.1
1,370,106	+				+0.1
1,370,113	-				+0.3
1,370,114	-				-0.9
1,370,119	+				-1.1
1,370,126	-				+0.1
1,370,129	+				-0.3
1,370,130	+				+0.4
1,370,130	+				-1.5
1,370,137	-				-0.6
1,370,138	-				-1.3
1,370,138	-				+1.2
1,370,138	-				+0.2
1,370,138	-				-0.7
1,370,138	-				-1.6
1,370,138	-				-0.4
1,370,146	-				-0.4
1,370,186	+				-1.8
1,370,194	-				-0.0
1,370,207	+				-1.9
1,370,207	+				+0.5
1,370,215	-				-1.9
1,370,216	-				+0.4
1,370,220	+				-1.7
1,370,241	+				-2.2
1,370,243	+				-1.6
1,370,251	+				-1.3
1,370,259	-				-0.6
1,370,267	+		GFF1350	0.11	-2.2
1,370,267	+		GFF1350	0.11	-0.4
1,370,267	+		GFF1350	0.11	+0.4
1,370,267	+		GFF1350	0.11	+0.5
1,370,267	+		GFF1350	0.11	-0.1
1,370,270	-		GFF1350	0.12	+0.6
1,370,275	-		GFF1350	0.13	+0.3
1,370,275	-		GFF1350	0.13	+0.4
1,370,275	-		GFF1350	0.13	-0.1
1,370,275	-		GFF1350	0.13	-0.0
1,370,280	+		GFF1350	0.14	-1.9
1,370,308	+		GFF1350	0.19	-0.4
1,370,310	-		GFF1350	0.19	-0.3
1,370,317	-		GFF1350	0.21	+0.7
1,370,317	-		GFF1350	0.21	-0.5
1,370,317	-		GFF1350	0.21	-1.9
1,370,326	+		GFF1350	0.22	-1.9
1,370,331	+		GFF1350	0.23	-0.5
1,370,332	+		GFF1350	0.24	+0.4
1,370,334	-		GFF1350	0.24	-0.5
1,370,334	-		GFF1350	0.24	-0.7
1,370,350	+		GFF1350	0.27	-0.7
1,370,350	+		GFF1350	0.27	+0.8
1,370,353	-		GFF1350	0.28	+0.3
1,370,367	+		GFF1350	0.30	-0.9
1,370,481	+		GFF1350	0.52	-0.9
1,370,487	+		GFF1350	0.53	-0.9
1,370,489	-		GFF1350	0.54	+0.3
1,370,490	-		GFF1350	0.54	+0.5
1,370,493	-		GFF1350	0.54	-0.6
1,370,506	+		GFF1350	0.57	-0.0
1,370,506	+		GFF1350	0.57	+0.4
1,370,506	+		GFF1350	0.57	+1.6
1,370,506	+		GFF1350	0.57	-0.0
1,370,506	+		GFF1350	0.57	-0.5
1,370,506	+		GFF1350	0.57	-0.6
1,370,514	-		GFF1350	0.58	-1.8
1,370,514	-		GFF1350	0.58	-0.4
1,370,519	+		GFF1350	0.59	-0.2
1,370,567	+		GFF1350	0.68	-0.7
1,370,573	-		GFF1350	0.70	+0.3
1,370,583	+		GFF1350	0.71	-2.0
1,370,583	+		GFF1350	0.71	+0.4
1,370,591	-		GFF1350	0.73	-0.3
1,370,591	-		GFF1350	0.73	+0.6
1,370,605	-		GFF1350	0.76	-2.9
1,370,614	+		GFF1350	0.77	+0.4
1,370,621	-		GFF1350	0.79	-0.2
1,370,633	+		GFF1350	0.81	-0.7
1,370,643	-		GFF1350	0.83	+0.2
1,370,657	+		GFF1350	0.86	+0.3
1,370,658	+		GFF1350	0.86	-0.1
1,370,658	+		GFF1350	0.86	-1.6
1,370,658	+		GFF1350	0.86	-0.5
1,370,668	+		GFF1350	0.88	-0.6
1,370,668	+		GFF1350	0.88	-0.0
1,370,668	+		GFF1350	0.88	+0.1
1,370,668	+		GFF1350	0.88	-0.8
1,370,668	+		GFF1350	0.88	-0.1
1,370,668	+		GFF1350	0.88	-1.1
1,370,676	-		GFF1350	0.89	-0.0
1,370,676	-		GFF1350	0.89	+0.1
1,370,676	-		GFF1350	0.89	-0.3
1,370,694	+				+1.2
1,370,705	-				-0.4
1,370,707	-				-0.1
1,370,707	-				+1.2
1,370,711	+				-0.5
1,370,711	+				+0.1
1,370,726	+				-2.1
1,370,726	+				-0.4
1,370,734	-				-1.2
1,370,744	+				-2.3
1,370,744	+				-1.2
1,370,744	-				-2.2
1,370,744	-				-0.6
1,370,744	-				+0.8
1,370,769	+				-0.3
1,370,769	+				-0.2
1,370,769	+				-0.1
1,370,770	-				+0.5
1,370,775	+				-0.7
1,370,785	+				+1.0
1,370,803	-				-0.3
1,370,819	+				-0.3
1,370,842	+				-0.9
1,370,842	+				+1.1
1,370,842	+				-2.0
1,370,848	+				+0.5
1,370,850	-				-1.2
1,370,850	-				-0.5
1,370,850	-				-0.6
1,370,864	+				+1.4
1,370,864	+				-0.3
1,370,864	+				+0.6
1,370,867	-				-1.2
1,370,871	+				+0.3
1,370,871	+				-0.8
1,370,871	+				+1.3
1,370,871	+				-0.9
1,370,872	-				-0.2
1,370,872	-				-1.4
1,370,872	-				-0.2
1,370,879	-				+1.1
1,370,879	-				+0.8
1,370,879	-				-0.3
1,370,879	-				-1.3
1,370,879	-				-0.8
1,370,879	-				-0.0
1,370,889	-				-0.4
1,370,915	+				-1.2
1,370,915	+				-0.9
1,370,915	+				+0.6
1,370,923	-				-1.2
1,370,923	-				-0.6
1,370,923	-				-0.5
1,370,988	+		GFF1351	0.12	+0.7
1,370,993	-		GFF1351	0.13	+0.1
1,370,993	-		GFF1351	0.13	+1.0
1,370,995	+		GFF1351	0.13	-3.4
1,371,001	+		GFF1351	0.13	-1.6
1,371,001	+		GFF1351	0.13	-0.4
1,371,001	+		GFF1351	0.13	+0.1
1,371,002	-		GFF1351	0.13	+0.3
1,371,003	-		GFF1351	0.13	+0.2
1,371,009	-		GFF1351	0.14	+0.1
1,371,009	-		GFF1351	0.14	-0.4
1,371,011	-		GFF1351	0.14	-0.0
1,371,026	+		GFF1351	0.15	-1.2
1,371,034	-		GFF1351	0.15	-1.9
1,371,034	-		GFF1351	0.15	-0.8
1,371,034	-		GFF1351	0.15	+0.2
1,371,034	-		GFF1351	0.15	-0.6
1,371,040	+		GFF1351	0.15	-1.2
1,371,040	+		GFF1351	0.15	+1.3
1,371,040	+		GFF1351	0.15	+0.1
1,371,040	+		GFF1351	0.15	+1.3
1,371,048	-		GFF1351	0.16	+0.5
1,371,048	-		GFF1351	0.16	-0.7
1,371,093	+		GFF1351	0.18	+0.1
1,371,108	-		GFF1351	0.19	-0.0