Strain Fitness in Sphingobium sp. HT1-2 around GFF1304

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,331,702	+				-0.7
1,331,716	+				-0.7
1,331,734	+				+1.2
1,331,734	+				+0.4
1,331,734	+				-0.3
1,331,742	-				-0.4
1,331,748	-				+0.2
1,331,757	+				+1.7
1,331,757	+				+0.3
1,331,757	+				+0.9
1,331,765	-				-0.1
1,331,765	-				-0.6
1,331,827	+				+0.2
1,331,840	+				+0.2
1,331,840	+				-0.0
1,331,840	+				-0.5
1,331,840	+				-0.8
1,331,840	+				-1.7
1,331,840	+				-1.2
1,331,840	+				-0.0
1,331,840	+				-0.5
1,331,840	+				+0.1
1,331,840	+				-2.2
1,331,840	+				+0.6
1,331,840	+				-0.9
1,331,840	+				-0.6
1,331,840	+				-1.3
1,331,840	+				+1.3
1,331,840	+				-1.9
1,331,840	+				-0.1
1,331,840	+				+0.2
1,331,840	+				-1.6
1,331,840	+				-0.9
1,331,840	+				-0.2
1,331,840	+				+1.5
1,331,840	+				-1.4
1,331,840	+				-1.0
1,331,840	+				-0.5
1,331,840	+				+0.1
1,331,840	+				-0.2
1,331,840	+				-0.6
1,331,840	+				+0.4
1,331,840	+				+0.4
1,331,840	+				-0.2
1,331,843	-				-2.2
1,331,845	+				+1.1
1,331,845	+				-0.0
1,331,848	-				-0.5
1,331,848	-				+0.6
1,331,848	-				+0.6
1,331,848	-				-0.8
1,331,848	-				+1.7
1,331,848	-				-0.4
1,331,848	-				+0.4
1,331,848	-				+0.7
1,331,848	-				+0.6
1,331,848	-				-0.2
1,331,848	-				+1.1
1,331,848	-				-0.7
1,331,848	-				+0.9
1,331,848	-				-0.1
1,331,848	-				+1.0
1,331,848	-				-0.4
1,331,848	-				-0.2
1,331,848	-				-0.4
1,331,853	-				-1.2
1,331,864	+				-1.1
1,331,872	-				-2.4
1,331,914	-				-0.6
1,331,924	+				-1.6
1,331,924	+				-0.1
1,331,929	+				+1.0
1,331,932	-				-1.8
1,331,932	-				+0.3
1,331,932	-				-0.4
1,331,937	-				-1.9
1,331,937	-				-0.8
1,331,972	+				+0.4
1,331,972	+				+1.0
1,331,991	-				-1.5
1,332,017	+				+0.9
1,332,030	-				-2.6
1,332,072	+				-0.6
1,332,080	-				-1.4
1,332,080	-				-0.1
1,332,080	-				-2.0
1,332,088	-				+1.0
1,332,088	-				+1.2
1,332,090	-				-0.4
1,332,090	-				+0.1
1,332,090	-				+0.6
1,332,090	-				+0.4
1,332,094	+				-0.4
1,332,098	-				-0.3
1,332,107	-				-0.1
1,332,113	+				+0.0
1,332,113	+				+0.5
1,332,113	+				+0.3
1,332,117	-				-1.7
1,332,128	+				+1.8
1,332,167	+		GFF1303	0.12	-0.6
1,332,170	+		GFF1303	0.12	+1.3
1,332,173	+		GFF1303	0.13	-0.2
1,332,173	-		GFF1303	0.13	-1.0
1,332,173	-		GFF1303	0.13	-0.9
1,332,181	-		GFF1303	0.14	-0.3
1,332,183	+		GFF1303	0.14	-1.0
1,332,186	-		GFF1303	0.15	+0.2
1,332,246	-		GFF1303	0.25	+0.6
1,332,246	-		GFF1303	0.25	-1.0
1,332,249	+		GFF1303	0.25	+0.7
1,332,249	+		GFF1303	0.25	-0.8
1,332,255	-		GFF1303	0.26	+1.9
1,332,262	+		GFF1303	0.28	-1.1
1,332,276	+		GFF1303	0.30	+0.6
1,332,350	-		GFF1303	0.42	+0.1
1,332,354	+		GFF1303	0.43	+0.8
1,332,393	-		GFF1303	0.49	+0.0
1,332,397	+		GFF1303	0.50	+0.3
1,332,397	+		GFF1303	0.50	+2.1
1,332,468	+		GFF1303	0.62	-1.7
1,332,468	+		GFF1303	0.62	-0.8
1,332,468	+		GFF1303	0.62	+0.6
1,332,468	+		GFF1303	0.62	-0.1
1,332,468	+		GFF1303	0.62	+1.2
1,332,468	+		GFF1303	0.62	-0.4
1,332,468	+		GFF1303	0.62	-0.6
1,332,468	+		GFF1303	0.62	+0.5
1,332,468	+		GFF1303	0.62	-0.5
1,332,476	-		GFF1303	0.63	-0.2
1,332,476	-		GFF1303	0.63	-0.2
1,332,480	+		GFF1303	0.64	+0.6
1,332,486	-		GFF1303	0.65	+0.1
1,332,488	+		GFF1303	0.65	-1.2
1,332,490	+		GFF1303	0.66	-1.3
1,332,547	+		GFF1303	0.75	+1.0
1,332,584	+		GFF1303	0.81	-0.2
1,332,643	-				-2.4
1,332,691	+				+0.2
1,332,699	-				-1.7
1,332,702	-				-3.1
1,332,736	+				-0.8
1,332,745	-		GFF1304	0.11	-0.0
1,332,755	+		GFF1304	0.14	-0.1
1,332,759	+		GFF1304	0.15	+0.6
1,332,759	+		GFF1304	0.15	-2.4
1,332,759	+		GFF1304	0.15	-0.2
1,332,763	-		GFF1304	0.16	-0.7
1,332,767	+		GFF1304	0.17	-0.9
1,332,767	-		GFF1304	0.17	-0.2
1,332,767	-		GFF1304	0.17	-0.0
1,332,767	-		GFF1304	0.17	-1.4
1,332,816	-		GFF1304	0.28	-0.5
1,332,905	+		GFF1304	0.50	+0.2
1,332,905	+		GFF1304	0.50	-0.1
1,332,905	+		GFF1304	0.50	+0.1
1,332,907	+		GFF1304	0.50	-0.6
1,332,907	+		GFF1304	0.50	+0.1
1,332,913	+		GFF1304	0.51	-1.6
1,332,913	+		GFF1304	0.51	-0.0
1,332,913	+		GFF1304	0.51	-0.4
1,332,913	+		GFF1304	0.51	-1.6
1,332,913	+		GFF1304	0.51	-0.2
1,332,913	+		GFF1304	0.51	-0.2
1,332,919	+		GFF1304	0.53	-0.9
1,332,921	-		GFF1304	0.53	-0.6
1,332,921	-		GFF1304	0.53	+0.2
1,332,923	-		GFF1304	0.54	-0.8
1,332,934	+		GFF1304	0.56	+0.0
1,332,937	-		GFF1304	0.57	-1.0
1,332,952	-		GFF1304	0.61	+0.1
1,332,952	-		GFF1304	0.61	-0.9
1,332,957	+		GFF1304	0.62	+0.8
1,332,968	+		GFF1304	0.65	+1.1
1,332,968	+		GFF1304	0.65	+0.0
1,332,968	+		GFF1304	0.65	+0.9
1,332,968	+		GFF1304	0.65	-2.1
1,332,968	+		GFF1304	0.65	-0.4
1,332,968	+		GFF1304	0.65	+0.6
1,332,968	+		GFF1304	0.65	-0.6
1,332,968	+		GFF1304	0.65	-0.9
1,332,976	-		GFF1304	0.66	+0.5
1,332,976	-		GFF1304	0.66	-0.4
1,332,976	-		GFF1304	0.66	+1.3
1,332,976	-		GFF1304	0.66	-0.5
1,332,976	-		GFF1304	0.66	+0.6
1,332,976	-		GFF1304	0.66	+0.8
1,332,976	-		GFF1304	0.66	-0.3
1,332,976	-		GFF1304	0.66	+0.4
1,332,976	-		GFF1304	0.66	-0.3
1,332,976	-		GFF1304	0.66	+0.5
1,332,976	-		GFF1304	0.66	-1.3
1,333,002	+		GFF1304	0.73	+0.4
1,333,002	+		GFF1304	0.73	-0.4
1,333,010	-		GFF1304	0.75	-1.9
1,333,013	+		GFF1304	0.75	-1.5
1,333,013	+		GFF1304	0.75	+0.1
1,333,021	-		GFF1304	0.77	-2.0
1,333,049	-		GFF1304	0.84	-0.5
1,333,049	-		GFF1304	0.84	-2.7
1,333,060	-		GFF1304	0.86	-0.7
1,333,066	+		GFF1304	0.88	-1.4
1,333,067	+		GFF1304	0.88	+0.2
1,333,067	+		GFF1304	0.88	-0.7
1,333,067	+		GFF1304	0.88	-0.1
1,333,067	+		GFF1304	0.88	-1.1
1,333,067	+		GFF1304	0.88	+1.7
1,333,075	-				+1.6
1,333,098	+				+0.5
1,333,098	+				+1.1
1,333,109	+				-0.2
1,333,145	+				-0.6
1,333,145	+				+1.1
1,333,215	+				-0.9
1,333,223	-				-1.6
1,333,223	-				-0.0
1,333,259	+				+0.2
1,333,267	+				-0.6
1,333,267	-				-1.0
1,333,269	+				+0.6
1,333,271	-				-1.8
1,333,274	+				-0.5
1,333,277	-				-2.6
1,333,277	-				-0.5
1,333,283	+				+0.3
1,333,283	+				-0.0
1,333,291	-				-1.1
1,333,291	-				+0.1
1,333,365	-				+0.6
1,333,365	-				-1.2
1,333,365	-				-0.4
1,333,372	-				+0.2
1,333,377	+				-0.8
1,333,377	+				+0.0
1,333,377	+				-0.7
1,333,377	+				-0.7
1,333,377	-				+0.5
1,333,385	-				+1.0
1,333,395	-				+0.3
1,333,439	+				+0.4
1,333,439	+				-1.7
1,333,439	+				+0.5
1,333,439	+				+0.1
1,333,439	+				-0.6
1,333,442	-				+0.6
1,333,444	+				-0.3
1,333,447	-				-0.2
1,333,447	-				-0.2
1,333,452	-				+0.4
1,333,504	+				+0.9
1,333,504	+				+0.8
1,333,512	-				-0.1
1,333,538	+				-0.5
1,333,538	+				+0.5
1,333,538	+				-0.5
1,333,538	+				-1.6
1,333,546	-				+1.1
1,333,546	-				+2.3
1,333,546	-				-1.3
1,333,546	-				-0.5
1,333,546	-				-1.9
1,333,546	-				+0.4
1,333,564	+				-1.5
1,333,572	-				-0.5
1,333,590	+				-1.5
1,333,628	+				+0.2
1,333,628	+				+0.5
1,333,636	-				+0.1
1,333,636	-				-0.6
1,333,662	+				-2.7
1,333,662	+				-0.0
1,333,663	+				+1.8
1,333,663	+				+0.7
1,333,663	+				-0.9
1,333,664	-				+0.7
1,333,669	+				+0.6
1,333,670	+				-1.2
1,333,670	+				+0.3
1,333,671	-				+1.0
1,333,672	-				-1.2
1,333,675	+				-2.0
1,333,677	-				-1.4
1,333,677	-				-1.7
1,333,677	-				-2.2
1,333,678	-				+0.4
1,333,678	-				-0.9
1,333,680	+				-0.1
1,333,680	+				+0.5
1,333,680	+				-1.4
1,333,680	+				-0.2
1,333,680	+				+0.5
1,333,680	-				+0.1
1,333,683	-				+0.5
1,333,688	-				+0.1
1,333,688	-				-1.1
1,333,688	-				+1.2
1,333,688	-				-0.0
1,333,688	-				-0.3
1,333,688	-				+0.1
1,333,730	+				+0.5
1,333,825	+				+0.8
1,333,827	-				-0.9
1,333,830	+				+0.5
1,333,830	+				-1.0
1,333,830	+				+0.3
1,333,831	-				+0.0
1,333,837	+				-1.1
1,333,837	+				-1.3
1,333,845	-				-0.9
1,333,845	-				-1.0
1,333,880	+				+0.9
1,333,900	+				-1.5
1,333,900	+				-0.2
1,333,900	+				+0.4
1,333,900	+				-0.3
1,333,900	+				-0.1
1,333,900	+				+1.1
1,333,900	+				-0.4
1,333,900	+				-0.5
1,333,900	+				+0.3
1,333,901	+				-0.0
1,333,901	+				-0.5
1,333,908	-				-0.2
1,333,908	-				-1.2
1,333,908	-				-1.1
1,333,926	-				-0.9
1,333,945	+				+0.7
1,333,945	+				-0.3
1,333,960	+				+0.1
1,333,960	+				+0.0
1,333,960	-				+0.5
1,333,960	-				-3.2
1,333,960	-				+0.8
1,333,960	-				-0.1
1,333,960	-				-0.6
1,333,965	+				+1.6
1,333,968	-				+0.1
1,333,977	-				-0.5
1,333,996	-				-0.6
1,334,004	+				-1.9
1,334,032	-				+0.7
1,334,032	-				-0.3
1,334,037	+				-0.6
1,334,043	+				-0.9
1,334,045	-				+0.6
1,334,063	+				-0.5
1,334,068	+				-0.3
1,334,071	-				-0.2
1,334,078	+				-0.5
1,334,083	+				+0.5
1,334,103	-		GFF1305	0.19	-1.2
1,334,110	+		GFF1305	0.25	-0.1