Strain Fitness in Sphingobium sp. HT1-2 around GFF129

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
122,241	-		GFF127	0.41	-0.0
122,246	+		GFF127	0.41	+0.8
122,247	+		GFF127	0.41	-1.5
122,253	+		GFF127	0.41	+0.4
122,255	+		GFF127	0.42	-1.0
122,255	+		GFF127	0.42	-0.5
122,261	-		GFF127	0.42	+1.0
122,268	-		GFF127	0.42	+0.7
122,295	-		GFF127	0.44	-0.3
122,310	+		GFF127	0.45	+1.4
122,313	-		GFF127	0.46	+0.1
122,313	-		GFF127	0.46	+0.4
122,313	-		GFF127	0.46	-1.6
122,324	-		GFF127	0.46	-2.5
122,328	-		GFF127	0.47	+0.9
122,331	+		GFF127	0.47	-0.3
122,331	+		GFF127	0.47	+0.3
122,331	+		GFF127	0.47	+0.4
122,334	-		GFF127	0.47	-1.3
122,341	+		GFF127	0.48	-1.4
122,348	+		GFF127	0.48	-1.4
122,364	-		GFF127	0.49	+0.2
122,373	-		GFF127	0.50	-0.3
122,373	-		GFF127	0.50	-1.1
122,388	-		GFF127	0.51	+0.3
122,391	+		GFF127	0.51	-0.4
122,391	+		GFF127	0.51	-0.7
122,451	-		GFF127	0.55	+0.3
122,471	+		GFF127	0.57	-0.9
122,495	+		GFF127	0.58	-1.0
122,523	+		GFF127	0.60	-0.1
122,523	+		GFF127	0.60	+0.2
122,541	-		GFF127	0.62	-0.3
122,551	-		GFF127	0.62	-1.1
122,560	+		GFF127	0.63	-2.4
122,567	+		GFF127	0.64	+0.3
122,567	+		GFF127	0.64	-0.7
122,568	-		GFF127	0.64	-1.0
122,568	-		GFF127	0.64	+0.4
122,568	-		GFF127	0.64	-1.1
122,568	-		GFF127	0.64	-0.5
122,574	+		GFF127	0.64	-1.2
122,575	-		GFF127	0.64	-2.0
122,575	-		GFF127	0.64	+0.8
122,575	-		GFF127	0.64	-0.2
122,575	-		GFF127	0.64	-1.4
122,582	-		GFF127	0.65	+0.2
122,594	+		GFF127	0.65	-0.3
122,594	-		GFF127	0.65	-1.2
122,623	+		GFF127	0.68	+1.9
122,631	-		GFF127	0.68	-0.7
122,631	-		GFF127	0.68	+1.2
122,631	-		GFF127	0.68	+0.2
122,641	+		GFF127	0.69	+1.0
122,641	+		GFF127	0.69	-2.3
122,641	+		GFF127	0.69	+0.6
122,646	+		GFF127	0.69	+0.6
122,646	+		GFF127	0.69	-1.6
122,649	-		GFF127	0.69	-1.1
122,649	-		GFF127	0.69	+0.8
122,649	-		GFF127	0.69	+0.0
122,651	+		GFF127	0.69	-1.0
122,652	-		GFF127	0.70	-0.3
122,654	-		GFF127	0.70	+1.7
122,654	-		GFF127	0.70	-1.1
122,659	-		GFF127	0.70	+0.5
122,660	+		GFF127	0.70	-0.5
122,668	-		GFF127	0.71	-0.4
122,668	-		GFF127	0.71	-1.5
122,668	-		GFF127	0.71	-1.7
122,668	-		GFF127	0.71	+0.5
122,668	-		GFF127	0.71	+0.1
122,668	-		GFF127	0.71	-1.0
122,676	-		GFF127	0.71	-0.9
122,676	-		GFF127	0.71	+0.1
122,710	+		GFF127	0.74	+0.2
122,723	+		GFF127	0.75	-0.5
122,723	+		GFF127	0.75	+0.7
122,723	+		GFF127	0.75	-1.2
122,723	+		GFF127	0.75	-2.0
122,730	+		GFF127	0.75	-1.0
122,731	-		GFF127	0.75	+1.3
122,738	-		GFF127	0.76	+0.6
122,806	+		GFF127	0.80	-0.2
122,811	+		GFF127	0.81	+0.6
122,819	-		GFF127	0.81	+0.6
122,819	-		GFF127	0.81	+1.2
122,819	-		GFF127	0.81	-0.1
122,819	-		GFF127	0.81	-0.1
122,821	-		GFF127	0.81	-1.1
122,826	+		GFF127	0.82	-0.5
122,826	+		GFF127	0.82	-0.2
122,826	+		GFF127	0.82	-1.0
122,826	+		GFF127	0.82	-0.0
122,826	+		GFF127	0.82	-0.8
122,829	-		GFF127	0.82	+0.9
122,829	-		GFF127	0.82	+0.9
122,830	+		GFF127	0.82	-0.0
122,831	+		GFF127	0.82	-0.7
122,831	+		GFF127	0.82	-1.8
122,834	-		GFF127	0.82	-2.1
122,834	-		GFF127	0.82	+0.2
122,834	-		GFF127	0.82	-0.1
122,834	-		GFF127	0.82	-1.2
122,834	-		GFF127	0.82	-0.0
122,836	+		GFF127	0.83	-0.0
122,836	+		GFF127	0.83	+0.5
122,836	+		GFF127	0.83	-1.1
122,836	+		GFF127	0.83	-0.0
122,836	+		GFF127	0.83	+0.6
122,836	+		GFF127	0.83	-0.2
122,836	+		GFF127	0.83	+0.4
122,839	-		GFF127	0.83	-1.6
122,839	-		GFF127	0.83	+0.0
122,839	-		GFF127	0.83	+0.6
122,839	-		GFF127	0.83	-1.8
122,839	-		GFF127	0.83	+0.9
122,844	-		GFF127	0.83	-0.0
122,844	-		GFF127	0.83	-0.5
122,844	-		GFF127	0.83	-1.4
122,844	-		GFF127	0.83	-0.1
122,844	-		GFF127	0.83	-0.5
122,844	-		GFF127	0.83	-0.5
122,844	-		GFF127	0.83	-1.1
122,844	-		GFF127	0.83	+1.1
122,844	-		GFF127	0.83	+0.1
122,844	-		GFF127	0.83	-0.0
122,844	-		GFF127	0.83	-0.4
122,851	-		GFF127	0.84	-0.2
122,863	+		GFF127	0.84	-1.0
122,863	+		GFF127	0.84	-0.6
122,869	+		GFF127	0.85	-2.2
122,871	-		GFF127	0.85	+0.9
122,887	-		GFF127	0.86	-0.5
122,896	-		GFF127	0.87	-1.2
122,915	-		GFF127	0.88	-2.0
122,922	+		GFF127	0.89	+0.1
122,922	+		GFF127	0.89	-0.1
122,922	+		GFF127	0.89	-0.7
122,922	+		GFF127	0.89	+0.2
122,922	+		GFF127	0.89	-0.7
122,922	+		GFF127	0.89	-0.2
122,922	+		GFF127	0.89	-0.2
122,922	+		GFF127	0.89	+0.9
122,922	+		GFF127	0.89	+0.7
122,922	+		GFF127	0.89	-0.2
122,922	+		GFF127	0.89	-1.5
122,922	+		GFF127	0.89	+1.2
122,922	+		GFF127	0.89	+0.3
122,922	+		GFF127	0.89	-0.2
122,922	+		GFF127	0.89	-0.2
122,922	+		GFF127	0.89	-0.4
122,922	+		GFF127	0.89	+0.3
122,922	+		GFF127	0.89	+0.2
122,930	-		GFF127	0.89	+1.0
122,930	-		GFF127	0.89	+0.4
122,930	-		GFF127	0.89	-0.1
122,930	-		GFF127	0.89	+0.6
122,930	-		GFF127	0.89	-0.8
122,930	-		GFF127	0.89	+0.3
122,930	-		GFF127	0.89	-0.3
122,930	-		GFF127	0.89	+0.6
122,930	-		GFF127	0.89	-2.2
122,930	-		GFF127	0.89	+0.3
122,930	-		GFF127	0.89	+0.6
122,930	-		GFF127	0.89	-0.2
122,930	-		GFF127	0.89	-0.2
122,930	-		GFF127	0.89	+1.4
122,930	-		GFF127	0.89	+1.0
122,930	-		GFF127	0.89	+1.4
122,930	-		GFF127	0.89	+0.0
122,930	-		GFF127	0.89	+0.5
122,930	-		GFF127	0.89	+0.4
122,930	-		GFF127	0.89	-0.1
122,930	-		GFF127	0.89	-0.1
122,930	-		GFF127	0.89	-1.9
122,973	-				+1.1
122,975	+				-0.2
122,982	+				-1.1
122,982	+				-1.7
122,982	+				+0.3
122,982	+				+0.3
122,982	+				-1.5
122,982	+				-0.4
122,982	+				+1.3
122,982	+				-1.4
122,982	+				+0.0
122,983	-				+0.6
122,983	-				-1.0
122,987	+				-1.2
122,987	+				-2.4
122,990	-				-0.5
122,990	-				+0.7
122,990	-				-2.2
122,990	-				-0.7
122,990	-				-1.4
123,011	-				+0.8
123,014	+				-2.0
123,033	-				+0.4
123,033	-				-1.9
123,041	+				+1.3
123,046	+				+1.2
123,049	-				+0.3
123,049	-				-0.4
123,054	-				+1.0
123,054	-				-1.4
123,054	-				-1.0
123,079	+				-2.5
123,079	+				+0.8
123,079	+				-0.7
123,079	+				-2.8
123,079	+				+1.3
123,087	-				-1.2
123,087	-				-2.7
123,087	-				-0.2
123,093	-				-0.5
123,156	+		GFF128	0.60	+1.2
123,156	+		GFF128	0.60	+0.3
123,156	+		GFF128	0.60	-0.8
123,157	+		GFF128	0.61	-0.2
123,157	+		GFF128	0.61	-0.1
123,164	-		GFF128	0.67	-1.0
123,164	-		GFF128	0.67	-1.0
123,167	+		GFF128	0.69	-0.1
123,167	+		GFF128	0.69	-2.1
123,167	+		GFF128	0.69	-1.2
123,167	+		GFF128	0.69	+0.1
123,167	+		GFF128	0.69	-1.1
123,167	+		GFF128	0.69	-0.3
123,170	-		GFF128	0.72	+0.6
123,175	-		GFF128	0.76	+0.6
123,175	-		GFF128	0.76	-0.5
123,188	+		GFF128	0.88	+0.1
123,188	+		GFF128	0.88	+0.6
123,188	+		GFF128	0.88	+0.0
123,188	+		GFF128	0.88	-0.8
123,188	+		GFF128	0.88	-0.4
123,196	-				+0.9
123,196	-				-0.4
123,196	-				+0.8
123,196	-				-1.3
123,211	-				+1.1
123,233	-				+0.8
123,239	+				+0.2
123,239	+				-0.2
123,248	-				-0.3
123,249	+				-0.9
123,249	+				+0.3
123,249	+				+0.3
123,249	+				+0.6
123,249	+				+0.7
123,249	+				-0.5
123,249	+				-1.3
123,249	+				+0.6
123,257	-				-1.5
123,257	-				-0.2
123,286	+				+0.5
123,294	-				-0.4
123,312	+				-0.6
123,319	+				-1.8
123,341	+				+0.0
123,344	-				+1.0
123,350	-				-0.3
123,350	-				-1.6
123,357	-				+0.7
123,358	+				-0.1
123,363	+				-0.3
123,368	+				-0.4
123,368	+				+0.9
123,376	+				-0.3
123,376	+				+0.9
123,376	-				-1.9
123,381	+		GFF129	0.10	-0.7
123,384	-		GFF129	0.11	-1.8
123,437	-		GFF129	0.14	+0.3
123,443	+		GFF129	0.14	+1.9
123,445	+		GFF129	0.14	-0.6
123,448	+		GFF129	0.15	-0.2
123,451	-		GFF129	0.15	+1.1
123,458	+		GFF129	0.15	-0.2
123,501	+		GFF129	0.18	+0.2
123,501	+		GFF129	0.18	-0.6
123,501	+		GFF129	0.18	-1.2
123,501	+		GFF129	0.18	-1.0
123,509	-		GFF129	0.19	+0.0
123,513	+		GFF129	0.19	+0.6
123,521	-		GFF129	0.19	-0.8
123,534	-		GFF129	0.20	-0.6
123,544	+		GFF129	0.21	-0.6
123,558	+		GFF129	0.22	+1.0
123,559	+		GFF129	0.22	-0.2
123,559	+		GFF129	0.22	-0.0
123,579	+		GFF129	0.23	-0.3
123,580	-		GFF129	0.23	-1.8
123,587	-		GFF129	0.24	-2.0
123,594	+		GFF129	0.24	-0.9
123,603	+		GFF129	0.25	+0.3
123,607	-		GFF129	0.25	-0.6
123,607	-		GFF129	0.25	-0.5
123,609	+		GFF129	0.25	-0.0
123,611	-		GFF129	0.25	-2.6
123,624	+		GFF129	0.26	-2.1
123,643	-		GFF129	0.27	+0.5
123,654	-		GFF129	0.28	+0.2
123,662	+		GFF129	0.29	-1.2
123,664	-		GFF129	0.29	-1.0
123,700	+		GFF129	0.31	+1.8
123,705	+		GFF129	0.31	-1.1
123,705	+		GFF129	0.31	-0.6
123,724	-		GFF129	0.33	+0.5
123,744	+		GFF129	0.34	-0.3
123,770	+		GFF129	0.36	+0.3
123,783	+		GFF129	0.37	-0.5
123,783	+		GFF129	0.37	-1.4
123,809	+		GFF129	0.38	+0.6
123,809	+		GFF129	0.38	-0.1
123,809	+		GFF129	0.38	+1.4
123,817	-		GFF129	0.39	-0.9
123,817	-		GFF129	0.39	-0.2
123,817	-		GFF129	0.39	+0.6
123,817	-		GFF129	0.39	+0.4
123,817	-		GFF129	0.39	+0.9
123,819	+		GFF129	0.39	-0.5
123,819	+		GFF129	0.39	-0.3
123,819	+		GFF129	0.39	-2.1
123,819	+		GFF129	0.39	-0.2
123,820	+		GFF129	0.39	-1.0
123,827	-		GFF129	0.39	+1.4
123,827	-		GFF129	0.39	-1.6
123,827	-		GFF129	0.39	+0.6
123,827	-		GFF129	0.39	-0.0
123,856	+		GFF129	0.41	-1.5
123,856	+		GFF129	0.41	+0.2
123,856	+		GFF129	0.41	-0.0
123,856	+		GFF129	0.41	-1.8
123,864	-		GFF129	0.42	-0.9
123,885	+		GFF129	0.43	+1.6
123,887	+		GFF129	0.43	-2.0
123,887	+		GFF129	0.43	+0.6
123,920	+		GFF129	0.45	-0.6
123,996	+		GFF129	0.50	-2.6
123,996	+		GFF129	0.50	-0.3
124,001	+		GFF129	0.51	-0.1
124,008	+		GFF129	0.51	-1.0
124,009	-		GFF129	0.51	-1.1
124,009	-		GFF129	0.51	-0.1
124,010	+		GFF129	0.51	-1.2
124,017	-		GFF129	0.52	-1.2
124,029	-		GFF129	0.53	-0.4
124,039	-		GFF129	0.53	-1.0
124,044	+		GFF129	0.54	+0.6
124,052	-		GFF129	0.54	-0.1
124,052	-		GFF129	0.54	+1.1
124,055	+		GFF129	0.54	-0.0
124,065	+		GFF129	0.55	+0.3
124,065	+		GFF129	0.55	-0.8
124,065	+		GFF129	0.55	-0.6
124,073	-		GFF129	0.55	-2.1
124,076	+		GFF129	0.56	+0.1
124,096	+		GFF129	0.57	-0.0
124,147	+		GFF129	0.60	-0.5
124,157	+		GFF129	0.61	+0.0
124,167	+		GFF129	0.62	-1.7
124,175	-		GFF129	0.62	-0.7
124,175	-		GFF129	0.62	+0.9
124,181	-		GFF129	0.62	-0.0
124,181	-		GFF129	0.62	-0.8
124,218	-		GFF129	0.65	+0.1
124,229	+		GFF129	0.66	+0.0
124,242	+		GFF129	0.66	+0.9
124,242	+		GFF129	0.66	+0.6
124,246	-		GFF129	0.67	+0.8
124,266	+		GFF129	0.68	-0.1
124,266	+		GFF129	0.68	-1.0
124,284	-		GFF129	0.69	+0.6
124,301	+		GFF129	0.70	-0.5
124,309	+		GFF129	0.71	-0.4
124,317	-		GFF129	0.71	-0.9
124,317	-		GFF129	0.71	-1.5
124,323	+		GFF129	0.72	-0.1
124,323	+		GFF129	0.72	-0.4
124,323	+		GFF129	0.72	-0.2
124,323	+		GFF129	0.72	-0.9
124,329	-		GFF129	0.72	-1.6
124,350	-		GFF129	0.74	+0.8
124,385	+		GFF129	0.76	-0.6
124,387	+		GFF129	0.76	-1.2
124,399	+		GFF129	0.77	+0.2
124,429	+		GFF129	0.79	-0.2
124,429	+		GFF129	0.79	-0.9
124,429	+		GFF129	0.79	-0.1
124,457	+		GFF129	0.80	-2.0
124,457	+		GFF129	0.80	+1.0
124,465	-		GFF129	0.81	+0.2
124,465	-		GFF129	0.81	-1.7
124,465	-		GFF129	0.81	-0.5
124,477	+		GFF129	0.82	-0.1
124,477	+		GFF129	0.82	+0.7
124,482	+		GFF129	0.82	-1.6
124,482	+		GFF129	0.82	+0.4
124,485	-		GFF129	0.82	+0.8
124,485	-		GFF129	0.82	-0.8
124,485	-		GFF129	0.82	+0.3
124,487	+		GFF129	0.82	-1.1
124,495	-		GFF129	0.83	+0.3
124,542	-		GFF129	0.86	-2.6
124,599	-		GFF129	0.90	+0.8
124,632	+				-0.1
124,641	-				-2.6
124,646	+				+0.1
124,682	+				-1.4
124,682	+				-0.1
124,682	+				+1.1
124,690	-				-1.9
124,690	-				-0.6
124,690	-				-1.1
124,690	-				+0.1
124,690	-				+1.2
124,690	-				+0.0
124,690	-				+0.2
124,690	-				-0.5
124,692	+				+0.4
124,692	+				-0.9
124,699	+				-0.9
124,699	+				+0.3
124,704	+				-0.7
124,712	-				-1.6
124,724	+				+0.1
124,771	+				-0.5
124,771	+				+0.9
124,771	+				+0.2
124,771	+				+0.1
124,771	+				-0.1
124,779	-				-0.8
124,779	-				+0.6
124,779	-				+0.1
124,804	-				-2.6
124,825	+				+0.3
124,828	-				+0.5
124,830	+				-0.7
124,830	+				+0.0
124,830	+				+0.6
124,830	+				-0.2
124,833	-				+0.2
124,840	+				+0.3
124,848	-				+1.1
124,848	-				+1.1
124,862	+				-1.2
124,862	+				-0.7
124,862	+				+0.0
124,862	+				+0.3
124,862	+				+1.0
124,862	+				+0.2
124,874	-				+1.1
124,874	-				-0.5
124,885	+		GFF130	0.12	-1.2
124,894	+		GFF130	0.15	+1.1
124,895	+		GFF130	0.15	-1.1
124,895	+		GFF130	0.15	+0.4
124,897	+		GFF130	0.16	+0.1
124,897	+		GFF130	0.16	-0.9
124,899	+		GFF130	0.17	-0.6
124,899	+		GFF130	0.17	-0.8
124,899	+		GFF130	0.17	-0.5
124,902	-		GFF130	0.18	-0.8
124,902	-		GFF130	0.18	-0.3
124,905	-		GFF130	0.19	-0.5
124,910	+		GFF130	0.21	+0.5
124,911	+		GFF130	0.21	-0.1
124,911	+		GFF130	0.21	-0.0
124,911	+		GFF130	0.21	+0.2
124,911	+		GFF130	0.21	+1.1
124,912	-		GFF130	0.21	+0.4
124,919	-		GFF130	0.24	-0.2
124,929	+		GFF130	0.27	-0.5
124,929	+		GFF130	0.27	+0.7
124,948	+		GFF130	0.34	-1.2
124,956	-		GFF130	0.36	-1.4
124,956	-		GFF130	0.36	-2.2
124,988	+		GFF130	0.47	-0.3
124,988	+		GFF130	0.47	-0.6
124,996	-		GFF130	0.50	-0.0
124,996	-		GFF130	0.50	-0.5
124,998	+		GFF130	0.51	+0.9
124,998	+		GFF130	0.51	+1.5
125,006	-		GFF130	0.54	-0.7
125,006	-		GFF130	0.54	-1.6
125,006	-		GFF130	0.54	+0.1
125,016	+		GFF130	0.57	-1.2
125,023	+		GFF130	0.59	+0.1
125,031	-		GFF130	0.62	+0.2
125,047	+		GFF130	0.68	+0.2
125,047	+		GFF130	0.68	-1.0
125,047	+		GFF130	0.68	+1.4
125,047	+		GFF130	0.68	-0.5
125,047	+		GFF130	0.68	+0.0
125,050	-		GFF130	0.69	-1.6
125,055	-		GFF130	0.70	-1.1
125,060	-		GFF130	0.72	+0.4
125,092	+		GFF130	0.83	+0.5
125,092	+		GFF130	0.83	+0.2
125,092	+		GFF130	0.83	-0.8
125,092	+		GFF130	0.83	-0.7
125,092	+		GFF130	0.83	-1.4
125,100	-		GFF130	0.86	+0.5
125,137	-				-0.3
125,137	-				+0.4
125,137	-				+0.7
125,143	-				+0.9
125,151	+				-1.2
125,181	+				+0.2
125,189	-				-1.9
125,211	-				-0.6
125,252	-		GFF131	0.14	-0.4
125,284	+		GFF131	0.21	+0.4
125,292	-		GFF131	0.23	-1.4
125,292	-		GFF131	0.23	+0.1
125,292	-		GFF131	0.23	+0.2
125,329	-		GFF131	0.32	-1.1
125,329	-		GFF131	0.32	-0.5
125,329	-		GFF131	0.32	+0.6
125,351	-		GFF131	0.37	-0.6
125,426	+		GFF131	0.54	-1.2
125,453	-		GFF131	0.60	+1.8
125,481	+		GFF131	0.66	-1.7
125,481	+		GFF131	0.66	-1.5
125,494	-		GFF131	0.69	-0.3
125,494	-		GFF131	0.69	-0.6
125,575	-		GFF131	0.87	-0.4
125,575	-		GFF131	0.87	-0.6
125,576	+		GFF131	0.88	+0.0
125,584	-		GFF131	0.89	-0.6
125,589	-				+0.2
125,606	-				+1.0
125,610	+				-0.3
125,633	-				-0.1
125,637	-				+0.2
125,655	-				-1.6
125,666	+				-0.0
125,701	+				+0.5
125,701	+				-0.9
125,701	+				-0.0
125,701	+				-1.0
125,701	+				+0.2
125,706	+				+0.1
125,706	+				-0.0
125,706	+				-0.7
125,706	+				+1.2
125,706	+				-0.6
125,706	+				-0.5
125,706	+				+0.9
125,709	-				-1.1
125,714	-				+0.3
125,714	-				-1.6
125,716	+				+0.2
125,720	+				+1.0
125,748	-				-1.2