Strain Fitness in Sphingobium sp. HT1-2 around GFF1131

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,134,721	+		GFF1130	0.21	-0.2
1,134,721	+		GFF1130	0.21	-1.8
1,134,734	-		GFF1130	0.22	+0.1
1,134,746	+		GFF1130	0.23	+0.4
1,134,746	+		GFF1130	0.23	-2.2
1,134,746	+		GFF1130	0.23	-1.3
1,134,754	-		GFF1130	0.24	-1.3
1,134,756	-		GFF1130	0.24	+0.9
1,134,779	+		GFF1130	0.26	-0.5
1,134,787	-		GFF1130	0.26	-0.3
1,134,800	+		GFF1130	0.27	-0.5
1,134,802	-		GFF1130	0.28	-1.8
1,134,821	-		GFF1130	0.29	+0.6
1,134,831	-		GFF1130	0.30	+0.6
1,134,853	+		GFF1130	0.32	+0.2
1,134,853	+		GFF1130	0.32	+1.1
1,134,853	+		GFF1130	0.32	-0.2
1,134,861	-		GFF1130	0.32	-0.4
1,134,861	-		GFF1130	0.32	-0.6
1,134,863	+		GFF1130	0.32	+0.1
1,134,863	+		GFF1130	0.32	-0.4
1,134,863	+		GFF1130	0.32	+0.5
1,134,863	+		GFF1130	0.32	-1.8
1,134,871	-		GFF1130	0.33	+1.0
1,134,871	-		GFF1130	0.33	-0.2
1,134,871	-		GFF1130	0.33	-0.3
1,134,891	-		GFF1130	0.35	-0.7
1,134,905	+		GFF1130	0.36	-0.2
1,134,924	+		GFF1130	0.37	+0.3
1,134,932	-		GFF1130	0.38	+0.2
1,134,932	-		GFF1130	0.38	-1.2
1,134,932	-		GFF1130	0.38	+0.4
1,134,932	-		GFF1130	0.38	+0.8
1,134,951	+		GFF1130	0.39	-0.4
1,134,951	+		GFF1130	0.39	+0.5
1,134,951	+		GFF1130	0.39	+0.6
1,134,954	+		GFF1130	0.39	-1.1
1,134,954	+		GFF1130	0.39	-1.2
1,134,959	+		GFF1130	0.40	+0.2
1,134,959	+		GFF1130	0.40	-0.3
1,134,959	+		GFF1130	0.40	-1.0
1,134,959	+		GFF1130	0.40	-1.5
1,134,960	-		GFF1130	0.40	+0.7
1,134,962	-		GFF1130	0.40	-0.9
1,134,964	+		GFF1130	0.40	+0.9
1,134,966	+		GFF1130	0.40	+1.1
1,134,966	+		GFF1130	0.40	-0.1
1,134,967	-		GFF1130	0.40	+1.0
1,134,967	-		GFF1130	0.40	-0.2
1,134,967	-		GFF1130	0.40	-1.9
1,134,967	-		GFF1130	0.40	-0.6
1,134,988	+		GFF1130	0.42	-0.4
1,134,988	+		GFF1130	0.42	-0.8
1,134,988	+		GFF1130	0.42	+0.3
1,134,991	-		GFF1130	0.42	-0.6
1,134,996	-		GFF1130	0.43	+1.0
1,134,996	-		GFF1130	0.43	+0.5
1,134,996	-		GFF1130	0.43	+0.3
1,135,009	+		GFF1130	0.44	+0.6
1,135,009	+		GFF1130	0.44	-0.1
1,135,017	+		GFF1130	0.44	-2.7
1,135,017	+		GFF1130	0.44	+0.6
1,135,017	+		GFF1130	0.44	-1.0
1,135,017	+		GFF1130	0.44	-1.2
1,135,017	-		GFF1130	0.44	+0.3
1,135,025	+		GFF1130	0.45	-0.5
1,135,025	-		GFF1130	0.45	-0.0
1,135,025	-		GFF1130	0.45	-0.2
1,135,043	-		GFF1130	0.46	+0.9
1,135,043	-		GFF1130	0.46	-2.0
1,135,053	+		GFF1130	0.47	+0.6
1,135,053	+		GFF1130	0.47	+0.5
1,135,053	+		GFF1130	0.47	+0.0
1,135,053	+		GFF1130	0.47	+0.1
1,135,053	+		GFF1130	0.47	+0.7
1,135,053	+		GFF1130	0.47	-0.5
1,135,053	+		GFF1130	0.47	-2.9
1,135,053	+		GFF1130	0.47	-2.2
1,135,061	-		GFF1130	0.48	+0.9
1,135,061	-		GFF1130	0.48	+0.3
1,135,061	-		GFF1130	0.48	-2.3
1,135,061	-		GFF1130	0.48	-0.4
1,135,061	-		GFF1130	0.48	+0.0
1,135,061	-		GFF1130	0.48	-1.1
1,135,061	-		GFF1130	0.48	-1.5
1,135,061	-		GFF1130	0.48	+1.1
1,135,066	-		GFF1130	0.48	-0.3
1,135,066	-		GFF1130	0.48	+0.4
1,135,066	-		GFF1130	0.48	-1.8
1,135,071	+		GFF1130	0.49	+0.9
1,135,079	-		GFF1130	0.49	+0.3
1,135,092	+		GFF1130	0.50	-0.5
1,135,100	-		GFF1130	0.51	+0.6
1,135,100	-		GFF1130	0.51	+0.3
1,135,110	+		GFF1130	0.52	+0.6
1,135,118	-		GFF1130	0.52	-0.7
1,135,125	-		GFF1130	0.53	-0.4
1,135,128	+		GFF1130	0.53	+1.2
1,135,134	+		GFF1130	0.54	+0.5
1,135,139	+		GFF1130	0.54	+0.3
1,135,149	+		GFF1130	0.55	-0.1
1,135,154	+		GFF1130	0.55	-1.4
1,135,157	-		GFF1130	0.55	-1.7
1,135,162	-		GFF1130	0.56	+0.4
1,135,164	-		GFF1130	0.56	-0.7
1,135,172	-		GFF1130	0.57	-0.7
1,135,174	+		GFF1130	0.57	-0.0
1,135,182	-		GFF1130	0.57	+0.1
1,135,182	-		GFF1130	0.57	+0.3
1,135,182	-		GFF1130	0.57	+1.3
1,135,183	+		GFF1130	0.57	+0.1
1,135,183	+		GFF1130	0.57	-0.4
1,135,183	+		GFF1130	0.57	-0.6
1,135,191	-		GFF1130	0.58	-0.1
1,135,191	-		GFF1130	0.58	+0.6
1,135,221	+		GFF1130	0.60	+0.0
1,135,221	+		GFF1130	0.60	+0.3
1,135,221	+		GFF1130	0.60	+0.4
1,135,221	+		GFF1130	0.60	-0.3
1,135,223	+		GFF1130	0.61	+0.4
1,135,224	-		GFF1130	0.61	-2.4
1,135,227	+		GFF1130	0.61	+0.8
1,135,227	+		GFF1130	0.61	+0.2
1,135,229	-		GFF1130	0.61	+0.3
1,135,233	+		GFF1130	0.61	+1.1
1,135,233	+		GFF1130	0.61	-0.2
1,135,233	+		GFF1130	0.61	-1.0
1,135,233	+		GFF1130	0.61	-0.1
1,135,238	+		GFF1130	0.62	-0.0
1,135,241	-		GFF1130	0.62	-1.4
1,135,241	-		GFF1130	0.62	-0.4
1,135,241	-		GFF1130	0.62	-0.5
1,135,241	-		GFF1130	0.62	+1.2
1,135,241	-		GFF1130	0.62	+0.2
1,135,241	-		GFF1130	0.62	+0.5
1,135,246	+		GFF1130	0.62	-0.9
1,135,246	-		GFF1130	0.62	+0.3
1,135,251	+		GFF1130	0.63	-1.4
1,135,259	+		GFF1130	0.63	+0.0
1,135,259	+		GFF1130	0.63	-0.3
1,135,283	+		GFF1130	0.65	-1.0
1,135,291	-		GFF1130	0.66	-0.5
1,135,384	+		GFF1130	0.73	-0.2
1,135,384	+		GFF1130	0.73	-0.6
1,135,384	+		GFF1130	0.73	+0.4
1,135,392	-		GFF1130	0.74	+0.3
1,135,392	-		GFF1130	0.74	-1.2
1,135,392	-		GFF1130	0.74	-0.2
1,135,392	-		GFF1130	0.74	+0.2
1,135,392	-		GFF1130	0.74	+0.5
1,135,392	-		GFF1130	0.74	+0.6
1,135,419	+		GFF1130	0.76	+0.4
1,135,419	+		GFF1130	0.76	+0.9
1,135,427	-		GFF1130	0.77	+1.3
1,135,427	-		GFF1130	0.77	-0.2
1,135,445	-		GFF1130	0.78	-0.7
1,135,453	+		GFF1130	0.79	+0.3
1,135,456	-		GFF1130	0.79	+0.9
1,135,456	-		GFF1130	0.79	+0.7
1,135,461	-		GFF1130	0.79	-0.6
1,135,461	-		GFF1130	0.79	+0.4
1,135,493	+		GFF1130	0.82	-0.6
1,135,501	-		GFF1130	0.82	-0.7
1,135,524	+		GFF1130	0.84	-1.4
1,135,524	+		GFF1130	0.84	-1.7
1,135,529	+		GFF1130	0.85	-0.9
1,135,530	-		GFF1130	0.85	-0.8
1,135,532	-		GFF1130	0.85	-1.4
1,135,537	-		GFF1130	0.85	-1.4
1,135,564	-		GFF1130	0.87	-1.0
1,135,584	+		GFF1130	0.89	-0.5
1,135,584	+		GFF1130	0.89	-1.3
1,135,584	+		GFF1130	0.89	+0.4
1,135,584	+		GFF1130	0.89	+0.0
1,135,596	+				-0.4
1,135,596	+				-1.0
1,135,602	+				-1.1
1,135,604	-				-0.8
1,135,604	-				-0.8
1,135,604	-				-0.8
1,135,610	-				-1.0
1,135,636	+				-0.4
1,135,644	-				-1.1
1,135,649	+				+0.2
1,135,649	+				-2.3
1,135,649	+				+0.1
1,135,649	+				-0.7
1,135,649	+				-0.9
1,135,654	+				-1.1
1,135,654	+				+0.3
1,135,654	+				-1.2
1,135,654	+				+0.6
1,135,654	+				-2.9
1,135,654	+				-0.2
1,135,657	-				-1.0
1,135,657	-				+0.4
1,135,657	-				+1.2
1,135,662	-				-0.1
1,135,662	-				-2.1
1,135,662	-				+0.8
1,135,662	-				-1.6
1,135,662	-				+0.3
1,135,662	-				-0.6
1,135,664	+				-0.6
1,135,691	+				+0.0
1,135,706	+				-0.6
1,135,719	+				-0.9
1,135,724	+				+0.7
1,135,727	-				-0.3
1,135,727	-				-0.3
1,135,731	-				-1.0
1,135,732	-				+1.2
1,135,733	-				-0.3
1,135,763	-				+0.9
1,135,766	+				+0.9
1,135,766	+				+0.6
1,135,774	-				-0.1
1,135,776	+				-1.4
1,135,779	-				-0.5
1,135,779	-				+0.8
1,135,779	-				-1.6
1,135,779	-				-1.1
1,135,802	-				-1.6
1,135,811	+				-0.4
1,135,811	+				-0.5
1,135,811	+				-0.1
1,135,811	+				+0.9
1,135,849	+		GFF1131	0.12	-0.3
1,135,854	+		GFF1131	0.12	+0.1
1,135,860	-		GFF1131	0.13	+0.4
1,135,867	-		GFF1131	0.13	-0.5
1,135,899	+		GFF1131	0.16	+1.0
1,135,899	+		GFF1131	0.16	-1.0
1,135,913	+		GFF1131	0.18	+0.9
1,135,929	+		GFF1131	0.19	-0.1
1,135,929	+		GFF1131	0.19	+0.2
1,135,939	+		GFF1131	0.20	-0.3
1,135,945	+		GFF1131	0.20	+0.2
1,135,966	+		GFF1131	0.22	+0.6
1,135,966	+		GFF1131	0.22	+0.5
1,135,968	-		GFF1131	0.23	-0.4
1,135,992	-		GFF1131	0.25	+0.4
1,136,043	+		GFF1131	0.29	+1.6
1,136,043	+		GFF1131	0.29	-0.5
1,136,043	+		GFF1131	0.29	+1.2
1,136,051	-		GFF1131	0.30	-0.7
1,136,051	-		GFF1131	0.30	-2.3
1,136,051	-		GFF1131	0.30	-0.0
1,136,053	+		GFF1131	0.30	-0.5
1,136,060	-		GFF1131	0.31	-0.7
1,136,070	+		GFF1131	0.32	-0.2
1,136,075	+		GFF1131	0.32	+1.1
1,136,078	-		GFF1131	0.33	+0.8
1,136,083	-		GFF1131	0.33	+0.4
1,136,110	-		GFF1131	0.36	+0.2
1,136,158	-		GFF1131	0.40	-0.9
1,136,172	-		GFF1131	0.41	-1.0
1,136,177	+		GFF1131	0.42	+0.3
1,136,177	+		GFF1131	0.42	-1.5
1,136,177	+		GFF1131	0.42	+1.2
1,136,177	+		GFF1131	0.42	+0.1
1,136,177	+		GFF1131	0.42	-2.0
1,136,177	+		GFF1131	0.42	+0.8
1,136,177	+		GFF1131	0.42	-0.8
1,136,185	-		GFF1131	0.42	+1.6
1,136,185	-		GFF1131	0.42	-1.2
1,136,207	-		GFF1131	0.44	-1.3
1,136,211	+		GFF1131	0.45	-0.1
1,136,213	+		GFF1131	0.45	+0.7
1,136,213	+		GFF1131	0.45	-0.4
1,136,213	+		GFF1131	0.45	+0.0
1,136,213	+		GFF1131	0.45	+0.1
1,136,213	+		GFF1131	0.45	+0.3
1,136,221	-		GFF1131	0.46	+0.1
1,136,221	-		GFF1131	0.46	+0.6
1,136,221	-		GFF1131	0.46	-1.9
1,136,243	+		GFF1131	0.48	-1.2
1,136,243	+		GFF1131	0.48	-0.0
1,136,243	+		GFF1131	0.48	-1.8
1,136,243	+		GFF1131	0.48	-0.3
1,136,251	-		GFF1131	0.48	+0.2
1,136,251	-		GFF1131	0.48	-1.2
1,136,251	-		GFF1131	0.48	+0.3
1,136,253	+		GFF1131	0.49	+0.0
1,136,253	+		GFF1131	0.49	+0.1
1,136,253	+		GFF1131	0.49	-0.2
1,136,260	+		GFF1131	0.49	+0.6
1,136,268	-		GFF1131	0.50	-0.9
1,136,288	+		GFF1131	0.52	+0.9
1,136,288	+		GFF1131	0.52	+0.8
1,136,288	+		GFF1131	0.52	-0.7
1,136,288	+		GFF1131	0.52	+1.1
1,136,288	+		GFF1131	0.52	-0.2
1,136,288	+		GFF1131	0.52	-0.2
1,136,288	+		GFF1131	0.52	-0.0
1,136,288	+		GFF1131	0.52	+1.4
1,136,291	-		GFF1131	0.52	-1.2
1,136,291	-		GFF1131	0.52	-0.7
1,136,293	+		GFF1131	0.52	-0.8
1,136,293	+		GFF1131	0.52	-0.0
1,136,293	+		GFF1131	0.52	+0.5
1,136,293	+		GFF1131	0.52	-1.3
1,136,293	+		GFF1131	0.52	+0.5
1,136,293	+		GFF1131	0.52	+1.9
1,136,293	+		GFF1131	0.52	+0.6
1,136,293	+		GFF1131	0.52	+0.6
1,136,293	+		GFF1131	0.52	+0.8
1,136,293	+		GFF1131	0.52	-0.2
1,136,296	-		GFF1131	0.52	-1.5
1,136,296	-		GFF1131	0.52	-0.2
1,136,296	-		GFF1131	0.52	+1.4
1,136,296	-		GFF1131	0.52	+0.4
1,136,296	-		GFF1131	0.52	-0.7
1,136,296	-		GFF1131	0.52	+2.1
1,136,301	-		GFF1131	0.53	+0.6
1,136,301	-		GFF1131	0.53	+0.2
1,136,301	-		GFF1131	0.53	+0.3
1,136,301	-		GFF1131	0.53	+0.3
1,136,301	-		GFF1131	0.53	-1.4
1,136,301	-		GFF1131	0.53	+0.1
1,136,301	-		GFF1131	0.53	-1.5
1,136,301	-		GFF1131	0.53	+0.6
1,136,301	-		GFF1131	0.53	-0.2
1,136,301	-		GFF1131	0.53	-2.0
1,136,301	-		GFF1131	0.53	-0.7
1,136,301	-		GFF1131	0.53	-1.0
1,136,301	-		GFF1131	0.53	-0.6
1,136,301	-		GFF1131	0.53	+0.0
1,136,301	-		GFF1131	0.53	-1.0
1,136,301	-		GFF1131	0.53	-2.2
1,136,301	-		GFF1131	0.53	+0.8
1,136,301	-		GFF1131	0.53	-1.3
1,136,301	-		GFF1131	0.53	+0.8
1,136,301	-		GFF1131	0.53	+0.6
1,136,306	-		GFF1131	0.53	-0.6
1,136,307	+		GFF1131	0.53	+0.9
1,136,307	+		GFF1131	0.53	-1.2
1,136,315	-		GFF1131	0.54	-2.1
1,136,328	-		GFF1131	0.55	+1.6
1,136,352	-		GFF1131	0.58	-2.0
1,136,362	+		GFF1131	0.58	+0.4
1,136,362	+		GFF1131	0.58	-1.5
1,136,362	+		GFF1131	0.58	+0.3
1,136,370	-		GFF1131	0.59	-0.5
1,136,370	-		GFF1131	0.59	+0.5
1,136,370	-		GFF1131	0.59	-1.0
1,136,370	-		GFF1131	0.59	+0.5
1,136,382	-		GFF1131	0.60	+1.4
1,136,392	+		GFF1131	0.61	+0.5
1,136,392	+		GFF1131	0.61	+0.6
1,136,392	+		GFF1131	0.61	+0.8
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