Strain Fitness in Sphingobium sp. HT1-2 around GFF1111

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,112,457	+		GFF1110	0.51	+1.1
1,112,457	+		GFF1110	0.51	-0.2
1,112,459	+		GFF1110	0.51	+0.9
1,112,459	+		GFF1110	0.51	-0.5
1,112,460	-		GFF1110	0.51	+0.6
1,112,462	+		GFF1110	0.51	-0.8
1,112,465	-		GFF1110	0.51	-1.1
1,112,465	-		GFF1110	0.51	+1.1
1,112,465	-		GFF1110	0.51	-0.5
1,112,468	-		GFF1110	0.52	+1.7
1,112,470	-		GFF1110	0.52	-0.3
1,112,502	+		GFF1110	0.54	-0.1
1,112,505	-		GFF1110	0.54	+0.4
1,112,517	+		GFF1110	0.55	-0.2
1,112,527	+		GFF1110	0.56	+0.9
1,112,527	+		GFF1110	0.56	-0.4
1,112,535	-		GFF1110	0.56	-0.7
1,112,535	-		GFF1110	0.56	-0.6
1,112,535	-		GFF1110	0.56	-0.2
1,112,535	-		GFF1110	0.56	-1.0
1,112,535	-		GFF1110	0.56	+1.2
1,112,535	-		GFF1110	0.56	-0.7
1,112,539	+		GFF1110	0.57	-2.4
1,112,547	-		GFF1110	0.57	+0.1
1,112,549	-		GFF1110	0.57	-1.9
1,112,555	-		GFF1110	0.58	+1.0
1,112,565	+		GFF1110	0.59	-0.2
1,112,583	-		GFF1110	0.60	+0.3
1,112,583	-		GFF1110	0.60	+0.6
1,112,587	+		GFF1110	0.60	-1.9
1,112,596	+		GFF1110	0.61	-0.3
1,112,611	+		GFF1110	0.62	-0.7
1,112,619	-		GFF1110	0.62	+0.8
1,112,619	-		GFF1110	0.62	-0.2
1,112,642	-		GFF1110	0.64	+0.0
1,112,643	+		GFF1110	0.64	+0.7
1,112,660	-		GFF1110	0.65	-1.1
1,112,660	-		GFF1110	0.65	+2.0
1,112,668	-		GFF1110	0.66	-0.9
1,112,695	+		GFF1110	0.68	-0.7
1,112,703	+		GFF1110	0.69	-0.4
1,112,708	-		GFF1110	0.69	+0.1
1,112,713	-		GFF1110	0.69	+0.2
1,112,715	+		GFF1110	0.69	-0.8
1,112,715	+		GFF1110	0.69	-0.4
1,112,718	-		GFF1110	0.70	+0.5
1,112,725	+		GFF1110	0.70	+0.4
1,112,739	+		GFF1110	0.71	-0.2
1,112,739	+		GFF1110	0.71	-1.9
1,112,739	+		GFF1110	0.71	-1.5
1,112,739	+		GFF1110	0.71	-1.5
1,112,739	+		GFF1110	0.71	+0.8
1,112,747	-		GFF1110	0.72	-1.7
1,112,747	-		GFF1110	0.72	+1.0
1,112,747	-		GFF1110	0.72	+1.1
1,112,747	-		GFF1110	0.72	+0.3
1,112,747	-		GFF1110	0.72	-0.8
1,112,747	-		GFF1110	0.72	-1.3
1,112,747	-		GFF1110	0.72	+1.1
1,112,764	+		GFF1110	0.73	+0.5
1,112,777	-		GFF1110	0.74	+0.1
1,112,783	+		GFF1110	0.74	+0.4
1,112,785	+		GFF1110	0.74	+1.7
1,112,785	+		GFF1110	0.74	-1.1
1,112,786	+		GFF1110	0.75	-1.0
1,112,793	-		GFF1110	0.75	+1.2
1,112,821	+		GFF1110	0.77	-2.2
1,112,837	-		GFF1110	0.78	+0.3
1,112,846	-		GFF1110	0.79	+0.1
1,112,848	-		GFF1110	0.79	+0.1
1,112,881	+		GFF1110	0.81	-2.7
1,112,881	+		GFF1110	0.81	+0.4
1,112,881	+		GFF1110	0.81	-1.1
1,112,881	+		GFF1110	0.81	+1.1
1,112,881	+		GFF1110	0.81	-0.3
1,112,886	+		GFF1110	0.82	+0.3
1,112,889	-		GFF1110	0.82	+0.9
1,112,889	-		GFF1110	0.82	-0.8
1,112,889	-		GFF1110	0.82	+1.2
1,112,889	-		GFF1110	0.82	+0.5
1,112,889	-		GFF1110	0.82	-0.4
1,112,889	-		GFF1110	0.82	+0.4
1,112,890	+		GFF1110	0.82	-0.1
1,112,897	+		GFF1110	0.83	+1.2
1,112,897	+		GFF1110	0.83	+0.3
1,112,897	+		GFF1110	0.83	+1.1
1,112,897	+		GFF1110	0.83	+0.1
1,112,897	+		GFF1110	0.83	-1.2
1,112,897	+		GFF1110	0.83	-1.2
1,112,897	+		GFF1110	0.83	-2.6
1,112,897	+		GFF1110	0.83	+0.8
1,112,897	+		GFF1110	0.83	-1.7
1,112,898	-		GFF1110	0.83	-0.3
1,112,903	+		GFF1110	0.83	-0.5
1,112,904	-		GFF1110	0.83	-0.4
1,112,905	-		GFF1110	0.83	+0.3
1,112,905	-		GFF1110	0.83	+0.6
1,112,905	-		GFF1110	0.83	-1.5
1,112,905	-		GFF1110	0.83	-0.0
1,112,905	-		GFF1110	0.83	-0.9
1,112,905	-		GFF1110	0.83	+0.2
1,112,905	-		GFF1110	0.83	+0.9
1,112,905	-		GFF1110	0.83	+0.8
1,112,915	-		GFF1110	0.84	-0.4
1,112,959	+		GFF1110	0.87	+1.5
1,112,981	+		GFF1110	0.89	+0.0
1,112,989	-		GFF1110	0.89	+0.1
1,112,989	-		GFF1110	0.89	-0.2
1,113,000	+				+0.3
1,113,008	-				-1.2
1,113,008	-				+0.2
1,113,009	-				+0.2
1,113,048	+				-1.2
1,113,056	-				+0.1
1,113,074	-				+1.1
1,113,087	+				+1.8
1,113,087	+				+0.0
1,113,087	+				+0.7
1,113,095	-				-0.0
1,113,106	+				-1.2
1,113,114	-				+0.9
1,113,131	-				+0.7
1,113,134	+				-2.1
1,113,134	+				+0.1
1,113,134	+				-0.2
1,113,134	+				-0.8
1,113,134	+				+1.2
1,113,134	+				-0.2
1,113,139	+				+1.8
1,113,139	+				+0.2
1,113,139	+				+1.4
1,113,139	+				-0.2
1,113,139	+				-1.2
1,113,139	+				+0.1
1,113,139	+				-0.7
1,113,139	+				+0.2
1,113,142	-				-1.2
1,113,142	-				+2.0
1,113,142	-				-0.8
1,113,142	-				-0.0
1,113,142	-				+0.3
1,113,147	-				-2.0
1,113,147	-				-0.2
1,113,147	-				+0.3
1,113,147	-				+0.3
1,113,147	-				+0.3
1,113,152	-				-0.9
1,113,162	+				-0.7
1,113,206	+				+1.0
1,113,208	+				-0.6
1,113,208	+				-1.1
1,113,216	-				-2.6
1,113,461	-				-0.1
1,113,463	-				-0.1
1,113,472	+				-2.1
1,113,472	+				+0.3
1,113,475	-				-0.1
1,113,475	-				+0.3
1,113,480	-		GFF1111	0.11	+1.0
1,113,480	-		GFF1111	0.11	-0.2
1,113,511	+		GFF1111	0.25	+0.5
1,113,511	+		GFF1111	0.25	-2.7
1,113,519	-		GFF1111	0.28	+1.1
1,113,519	-		GFF1111	0.28	-0.6
1,113,519	-		GFF1111	0.28	+1.1
1,113,531	+		GFF1111	0.34	-1.3
1,113,531	+		GFF1111	0.34	-0.7
1,113,540	-		GFF1111	0.38	-0.4
1,113,562	-		GFF1111	0.48	-2.2
1,113,620	+		GFF1111	0.74	-0.7
1,113,620	-		GFF1111	0.74	-0.8
1,113,677	+				-0.3
1,113,682	+				+0.6
1,113,690	-				+0.2
1,113,701	-				-1.2
1,113,702	-				+0.4
1,113,706	-				-0.3
1,113,722	+				+0.9
1,113,731	-				-1.4
1,113,748	+		GFF1112	0.12	-1.0
1,113,760	+		GFF1112	0.14	-1.3
1,113,760	+		GFF1112	0.14	-0.0
1,113,763	-		GFF1112	0.15	-1.6
1,113,768	-		GFF1112	0.16	-0.1
1,113,791	+		GFF1112	0.20	+0.8
1,113,817	+		GFF1112	0.24	-1.3
1,113,828	-		GFF1112	0.26	-1.5
1,113,841	+		GFF1112	0.29	-1.0
1,113,843	+		GFF1112	0.29	-0.8
1,113,843	+		GFF1112	0.29	-2.5
1,113,858	-		GFF1112	0.32	-0.3
1,113,860	+		GFF1112	0.32	-1.2
1,113,860	+		GFF1112	0.32	-0.2
1,113,860	-		GFF1112	0.32	-0.7
1,113,860	-		GFF1112	0.32	-0.3
1,113,868	-		GFF1112	0.33	+0.5
1,113,875	+		GFF1112	0.35	-1.8
1,113,883	-		GFF1112	0.36	-1.4
1,113,903	-		GFF1112	0.40	+0.3
1,113,903	-		GFF1112	0.40	-1.7
1,113,905	+		GFF1112	0.40	+0.8
1,113,913	-		GFF1112	0.41	+0.2
1,113,913	-		GFF1112	0.41	-0.6
1,113,928	+		GFF1112	0.44	-0.5
1,113,933	+		GFF1112	0.45	-1.4
1,113,936	+		GFF1112	0.45	+1.6
1,113,936	+		GFF1112	0.45	-0.7
1,113,936	-		GFF1112	0.45	-0.6
1,113,936	-		GFF1112	0.45	-1.4
1,113,949	-		GFF1112	0.48	-0.3
1,113,949	-		GFF1112	0.48	+0.5
1,113,954	+		GFF1112	0.49	-0.9
1,113,954	-		GFF1112	0.49	-0.1
1,113,954	-		GFF1112	0.49	-1.2
1,113,962	-		GFF1112	0.50	-0.3
1,113,962	-		GFF1112	0.50	-0.2
1,113,974	+		GFF1112	0.52	+1.2
1,113,975	+		GFF1112	0.52	+1.4
1,114,012	+		GFF1112	0.59	+0.1
1,114,012	+		GFF1112	0.59	+0.0
1,114,050	+		GFF1112	0.66	-0.7
1,114,058	-		GFF1112	0.67	-0.7
1,114,088	-		GFF1112	0.73	+0.4
1,114,093	+		GFF1112	0.73	-0.6
1,114,099	+		GFF1112	0.75	+0.3
1,114,112	+		GFF1112	0.77	-0.1
1,114,112	+		GFF1112	0.77	+0.5
1,114,112	+		GFF1112	0.77	-0.1
1,114,112	-		GFF1112	0.77	-0.9
1,114,118	+		GFF1112	0.78	+0.3
1,114,120	-		GFF1112	0.78	+1.0
1,114,120	-		GFF1112	0.78	+0.6
1,114,120	-		GFF1112	0.78	-1.1
1,114,120	-		GFF1112	0.78	-0.7
1,114,120	-		GFF1112	0.78	-1.4
1,114,120	-		GFF1112	0.78	-0.5
1,114,120	-		GFF1112	0.78	+0.5
1,114,120	-		GFF1112	0.78	-0.9
1,114,132	+		GFF1112	0.80	-1.5
1,114,132	+		GFF1112	0.80	-1.5
1,114,140	-		GFF1112	0.82	-0.5
1,114,142	+		GFF1112	0.82	+0.7
1,114,142	+		GFF1112	0.82	+0.1
1,114,142	+		GFF1112	0.82	-0.8
1,114,142	+		GFF1112	0.82	-0.1
1,114,142	+		GFF1112	0.82	-2.2
1,114,143	+		GFF1112	0.82	+0.5
1,114,148	+		GFF1112	0.83	-0.4
1,114,150	-		GFF1112	0.84	+1.7
1,114,150	-		GFF1112	0.84	-2.2
1,114,150	-		GFF1112	0.84	+0.6
1,114,150	-		GFF1112	0.84	+0.2
1,114,150	-		GFF1112	0.84	+0.8
1,114,158	+		GFF1112	0.85	-0.4
1,114,166	-		GFF1112	0.86	-1.7
1,114,183	-		GFF1112	0.89	-0.1
1,114,202	+				+0.5
1,114,202	+				+0.9
1,114,213	-				+0.3
1,114,225	+				-2.2
1,114,359	-				-0.4
1,114,368	-				+0.7
1,114,370	+				-2.1
1,114,370	+				-2.3
1,114,370	+				-1.2
1,114,370	+				-2.1
1,114,378	-				+1.0
1,114,378	-				+0.6
1,114,378	-				+1.0
1,114,378	-				-0.9
1,114,378	-				+1.0
1,114,378	-				+1.4
1,114,378	-				+0.8
1,114,378	-				+0.4
1,114,378	-				-1.5
1,114,378	-				+0.6
1,114,384	+				-3.2
1,114,385	+				-0.0
1,114,385	+				-1.6
1,114,385	+				-1.8
1,114,393	-				+1.5
1,114,395	+				+0.5
1,114,433	-		GFF1113	0.10	-0.2
1,114,438	-		GFF1113	0.11	+0.0
1,114,460	+		GFF1113	0.12	-0.0
1,114,465	-		GFF1113	0.12	+1.0
1,114,485	-		GFF1113	0.13	+0.6
1,114,492	+		GFF1113	0.13	+0.9
1,114,502	+		GFF1113	0.14	-0.3
1,114,518	+		GFF1113	0.15	-0.1
1,114,520	+		GFF1113	0.15	-1.6
1,114,530	+		GFF1113	0.15	-1.2
1,114,531	-		GFF1113	0.15	-2.0
1,114,541	-		GFF1113	0.16	+0.3
1,114,556	+		GFF1113	0.17	+0.2
1,114,560	-		GFF1113	0.17	-1.1
1,114,569	+		GFF1113	0.17	-1.2
1,114,569	+		GFF1113	0.17	+1.9
1,114,569	+		GFF1113	0.17	-0.3
1,114,577	-		GFF1113	0.18	-0.6
1,114,582	-		GFF1113	0.18	-0.2
1,114,632	+		GFF1113	0.21	-0.2
1,114,635	-		GFF1113	0.21	+1.2
1,114,635	-		GFF1113	0.21	-0.3
1,114,636	-		GFF1113	0.21	-1.0
1,114,650	-		GFF1113	0.22	-0.0
1,114,650	-		GFF1113	0.22	+0.8
1,114,656	-		GFF1113	0.22	+0.9