Strain Fitness in Sphingobium sp. HT1-2 around GFF1105

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,107,752	+		GFF1104	0.66	-0.3
1,107,757	+		GFF1104	0.67	+0.5
1,107,765	-		GFF1104	0.67	-1.2
1,107,765	-		GFF1104	0.67	-1.2
1,107,765	-		GFF1104	0.67	-2.2
1,107,936	+		GFF1104	0.79	+0.2
1,108,323	+				+0.1
1,108,323	+				+0.6
1,108,602	+				-0.6
1,108,606	-				-1.6
1,108,620	-				+0.3
1,108,621	-				-1.6
1,108,644	+				-1.7
1,108,644	+				-0.4
1,108,652	-				-1.2
1,108,656	-				+0.1
1,108,662	-				-1.9
1,108,662	-				-0.5
1,108,676	+				-0.1
1,108,677	+				+0.7
1,108,699	-				-1.4
1,108,703	+				+0.0
1,108,720	-				-1.1
1,108,721	+				+0.3
1,108,737	-				-0.2
1,108,739	-				+1.1
1,108,798	+		GFF1105	0.27	+0.1
1,108,800	+		GFF1105	0.29	+0.4
1,108,800	+		GFF1105	0.29	-0.3
1,108,800	+		GFF1105	0.29	-0.3
1,108,808	-		GFF1105	0.33	-0.9
1,108,845	+		GFF1105	0.55	-0.2
1,108,845	+		GFF1105	0.55	+1.0
1,108,846	+		GFF1105	0.56	+0.2
1,108,853	-		GFF1105	0.60	-0.6
1,108,854	+		GFF1105	0.60	+1.3
1,108,854	-		GFF1105	0.60	+0.9
1,108,862	-		GFF1105	0.65	+0.6
1,108,867	+		GFF1105	0.68	-1.5
1,108,867	+		GFF1105	0.68	-1.6
1,108,867	+		GFF1105	0.68	-0.6
1,108,867	+		GFF1105	0.68	-1.5
1,108,867	+		GFF1105	0.68	+0.9
1,108,867	+		GFF1105	0.68	+0.5
1,108,867	+		GFF1105	0.68	-0.2
1,108,875	-		GFF1105	0.73	-0.9
1,108,875	-		GFF1105	0.73	-0.7
1,108,879	+		GFF1105	0.75	-2.0
1,108,882	-		GFF1105	0.77	-0.4
1,108,882	-		GFF1105	0.77	-1.3
1,108,882	-		GFF1105	0.77	-1.2
1,108,887	-		GFF1105	0.80	-0.5
1,108,887	-		GFF1105	0.80	+0.9
1,108,887	-		GFF1105	0.80	+1.0
1,108,893	+		GFF1105	0.83	-0.8
1,108,893	+		GFF1105	0.83	-1.0
1,108,893	+		GFF1105	0.83	-1.5
1,108,893	+		GFF1105	0.83	-0.3
1,108,895	-		GFF1105	0.84	+1.4
1,108,898	+		GFF1105	0.86	+0.6
1,108,901	-		GFF1105	0.88	-0.6
1,108,901	-		GFF1105	0.88	-0.4
1,108,901	-		GFF1105	0.88	-1.9
1,108,901	-		GFF1105	0.88	-0.0
1,108,906	+				-0.2
1,108,906	-				-1.3
1,108,911	+				+1.0
1,108,911	+				+0.3
1,108,931	+				+0.1
1,108,968	+				+0.5
1,108,968	+				+0.1
1,108,968	+				+0.0
1,108,968	+				-0.7
1,108,968	+				+1.0
1,108,968	+				+0.7
1,108,968	+				+0.5
1,108,968	+				-0.4
1,108,968	+				+0.2
1,108,968	+				-0.3
1,108,976	-				-2.4
1,108,976	-				-0.2
1,108,976	-				+0.0
1,108,976	-				+0.7
1,108,976	-				-0.6
1,108,976	-				-0.2
1,108,976	-				-0.3
1,108,976	-				+0.7
1,108,976	-				-0.3
1,108,977	-				-1.6
1,108,989	+				-0.6
1,108,997	-				-0.8
1,109,021	+				+0.1
1,109,050	-				-1.6
1,109,058	+				-0.3
1,109,058	+				+1.0
1,109,063	+				-1.4
1,109,064	-				-1.1
1,109,071	-				+1.7
1,109,093	+				+0.3
1,109,109	+				-1.4
1,109,109	+				+0.3
1,109,109	+				+0.2
1,109,109	+				+0.3
1,109,109	+				+0.3
1,109,109	+				-1.3
1,109,110	+				-0.6
1,109,114	+				+0.5
1,109,114	+				-0.1
1,109,114	+				+0.1
1,109,117	-				+0.0
1,109,117	-				-0.4
1,109,117	-				-2.9
1,109,117	-				+0.5
1,109,117	-				-0.4
1,109,118	-		GFF1106	0.10	+0.3
1,109,122	-		GFF1106	0.11	+0.1
1,109,129	+		GFF1106	0.13	-2.4
1,109,129	+		GFF1106	0.13	-0.6
1,109,135	+		GFF1106	0.14	-1.0
1,109,135	+		GFF1106	0.14	+0.3
1,109,135	+		GFF1106	0.14	-1.1
1,109,135	+		GFF1106	0.14	-0.7
1,109,135	+		GFF1106	0.14	+0.0
1,109,135	+		GFF1106	0.14	-0.5
1,109,135	+		GFF1106	0.14	+0.2
1,109,143	-		GFF1106	0.16	+0.7
1,109,143	-		GFF1106	0.16	-1.2
1,109,143	-		GFF1106	0.16	+1.3
1,109,143	-		GFF1106	0.16	+0.5
1,109,143	-		GFF1106	0.16	+0.8
1,109,143	-		GFF1106	0.16	+0.1
1,109,174	-		GFF1106	0.23	+0.4
1,109,195	+		GFF1106	0.27	-0.4
1,109,203	-		GFF1106	0.29	+0.3
1,109,220	+		GFF1106	0.33	-0.4
1,109,227	-		GFF1106	0.35	+0.3
1,109,237	-		GFF1106	0.37	+0.1
1,109,255	+		GFF1106	0.41	+0.3
1,109,263	+		GFF1106	0.43	-0.7
1,109,273	+		GFF1106	0.45	+0.6
1,109,286	+		GFF1106	0.48	-0.7
1,109,294	-		GFF1106	0.50	-0.6
1,109,294	-		GFF1106	0.50	+0.4
1,109,328	-		GFF1106	0.57	-1.0
1,109,330	+		GFF1106	0.58	+0.3
1,109,332	+		GFF1106	0.58	+0.5
1,109,333	-		GFF1106	0.59	+1.8
1,109,338	+		GFF1106	0.60	+0.6
1,109,348	+		GFF1106	0.62	-1.2
1,109,352	+		GFF1106	0.63	-0.1
1,109,358	+		GFF1106	0.64	+0.1
1,109,365	+		GFF1106	0.66	-0.8
1,109,365	+		GFF1106	0.66	+0.6
1,109,365	+		GFF1106	0.66	-0.6
1,109,365	+		GFF1106	0.66	+0.0
1,109,366	-		GFF1106	0.66	+0.4
1,109,373	+		GFF1106	0.68	-0.7
1,109,373	-		GFF1106	0.68	-0.4
1,109,375	+		GFF1106	0.68	-1.1
1,109,384	+		GFF1106	0.70	+0.8
1,109,384	+		GFF1106	0.70	+0.2
1,109,384	+		GFF1106	0.70	-0.4
1,109,385	+		GFF1106	0.70	-0.3
1,109,392	-		GFF1106	0.72	-0.7
1,109,392	-		GFF1106	0.72	-0.2
1,109,393	+		GFF1106	0.72	+1.4
1,109,398	+		GFF1106	0.73	-0.0
1,109,406	-		GFF1106	0.75	+0.3
1,109,412	+		GFF1106	0.76	+0.6
1,109,426	+		GFF1106	0.80	-0.9
1,109,434	+		GFF1106	0.81	-0.8
1,109,434	+		GFF1106	0.81	-2.0
1,109,434	+		GFF1106	0.81	-0.3
1,109,434	+		GFF1106	0.81	-0.5
1,109,434	+		GFF1106	0.81	+0.4
1,109,434	+		GFF1106	0.81	+0.4
1,109,434	+		GFF1106	0.81	+0.3
1,109,434	+		GFF1106	0.81	+0.8
1,109,434	+		GFF1106	0.81	+0.3
1,109,434	+		GFF1106	0.81	+0.4
1,109,434	+		GFF1106	0.81	-1.4
1,109,434	+		GFF1106	0.81	+1.3
1,109,434	+		GFF1106	0.81	+0.7
1,109,434	+		GFF1106	0.81	-0.2
1,109,442	-		GFF1106	0.83	-2.4
1,109,442	-		GFF1106	0.83	-1.3
1,109,442	-		GFF1106	0.83	-0.8
1,109,442	-		GFF1106	0.83	-0.0
1,109,442	-		GFF1106	0.83	+0.8
1,109,442	-		GFF1106	0.83	+0.1
1,109,442	-		GFF1106	0.83	+1.2
1,109,442	-		GFF1106	0.83	-0.7
1,109,442	-		GFF1106	0.83	+0.6
1,109,442	-		GFF1106	0.83	+0.3
1,109,442	-		GFF1106	0.83	+0.4
1,109,442	-		GFF1106	0.83	-0.6
1,109,442	-		GFF1106	0.83	-1.1
1,109,442	-		GFF1106	0.83	+0.2
1,109,444	+		GFF1106	0.84	-1.7
1,109,444	+		GFF1106	0.84	-0.9
1,109,444	+		GFF1106	0.84	+0.6
1,109,444	+		GFF1106	0.84	+0.1
1,109,444	+		GFF1106	0.84	-0.2
1,109,444	+		GFF1106	0.84	+0.2
1,109,444	+		GFF1106	0.84	+0.0
1,109,444	+		GFF1106	0.84	-1.1
1,109,444	+		GFF1106	0.84	-0.2
1,109,444	+		GFF1106	0.84	-0.1
1,109,452	+		GFF1106	0.85	+0.8
1,109,452	-		GFF1106	0.85	-0.4
1,109,452	-		GFF1106	0.85	-0.4
1,109,452	-		GFF1106	0.85	+0.1
1,109,452	-		GFF1106	0.85	-1.5
1,109,452	-		GFF1106	0.85	-1.3
1,109,452	-		GFF1106	0.85	-1.3
1,109,452	-		GFF1106	0.85	+0.1
1,109,452	-		GFF1106	0.85	-0.5
1,109,452	-		GFF1106	0.85	-0.2
1,109,452	-		GFF1106	0.85	+1.0
1,109,452	-		GFF1106	0.85	-0.7
1,109,452	-		GFF1106	0.85	-0.2
1,109,460	-		GFF1106	0.87	-1.5
1,109,498	+				+0.1
1,109,503	+				-0.0
1,109,503	-				+0.8
1,109,503	-				-0.4
1,109,516	+				-0.4
1,109,526	+				-0.9
1,109,526	+				+0.1
1,109,526	+				-1.4
1,109,526	+				+0.5
1,109,526	+				+0.2
1,109,531	+				-0.2
1,109,531	+				+0.5
1,109,531	+				-2.2
1,109,534	+				-1.3
1,109,534	-				+0.2
1,109,539	-				+0.3
1,109,539	-				-1.6
1,109,539	-				-1.1
1,109,539	-				+1.9
1,109,541	+				+1.0
1,109,542	-				+0.4
1,109,544	-				-0.5
1,109,546	+				-0.5
1,109,546	+				-0.3
1,109,549	-				+0.0
1,109,554	-				-0.3
1,109,559	-				-0.7
1,109,564	-				-0.2
1,109,564	-				+0.2
1,109,564	-				+0.4
1,109,574	+				+0.3
1,109,587	-				-1.2
1,109,606	-				-1.5
1,109,619	+				-0.4
1,109,619	+				+1.7
1,109,639	+				+0.4
1,109,639	+				+0.2
1,109,644	+				-1.9
1,109,644	+				+0.9
1,109,647	-				-0.8
1,109,649	+				-0.7
1,109,649	+				-0.1
1,109,649	+				+0.5
1,109,649	+				+0.3
1,109,652	-		GFF1107	0.11	-1.9
1,109,652	-		GFF1107	0.11	+0.3
1,109,657	-		GFF1107	0.12	+1.5
1,109,670	-		GFF1107	0.14	-0.0
1,109,674	+		GFF1107	0.15	+0.1
1,109,676	+		GFF1107	0.16	-0.6
1,109,689	-		GFF1107	0.19	-0.8
1,109,702	-		GFF1107	0.21	+0.0
1,109,715	-		GFF1107	0.24	+0.5
1,109,750	+		GFF1107	0.32	+0.8
1,109,750	+		GFF1107	0.32	-0.4
1,109,750	+		GFF1107	0.32	+0.1
1,109,750	+		GFF1107	0.32	+1.0
1,109,750	+		GFF1107	0.32	-0.1
1,109,750	+		GFF1107	0.32	+0.6
1,109,750	+		GFF1107	0.32	+0.1
1,109,751	+		GFF1107	0.32	-1.4
1,109,758	-		GFF1107	0.34	-0.5
1,109,758	-		GFF1107	0.34	-0.5
1,109,758	-		GFF1107	0.34	-0.5
1,109,758	-		GFF1107	0.34	+0.1
1,109,758	-		GFF1107	0.34	+1.1
1,109,758	-		GFF1107	0.34	+0.3
1,109,758	-		GFF1107	0.34	-0.1
1,109,759	-		GFF1107	0.34	-0.6
1,109,761	+		GFF1107	0.34	+1.2
1,109,761	+		GFF1107	0.34	-1.8
1,109,768	+		GFF1107	0.36	+1.0
1,109,769	-		GFF1107	0.36	-0.3
1,109,769	-		GFF1107	0.36	-0.2
1,109,774	-		GFF1107	0.37	+0.9
1,109,788	+		GFF1107	0.40	-0.5
1,109,788	+		GFF1107	0.40	+0.3
1,109,796	-		GFF1107	0.42	-0.5
1,109,796	-		GFF1107	0.42	-0.4
1,109,796	-		GFF1107	0.42	-0.8
1,109,803	+		GFF1107	0.44	-0.4
1,109,813	+		GFF1107	0.46	+0.1
1,109,818	+		GFF1107	0.47	+1.1
1,109,818	+		GFF1107	0.47	+0.5
1,109,826	-		GFF1107	0.49	-0.1
1,109,826	-		GFF1107	0.49	+1.0
1,109,826	-		GFF1107	0.49	+0.4
1,109,826	-		GFF1107	0.49	-0.6
1,109,849	+		GFF1107	0.54	+0.4
1,109,863	-		GFF1107	0.57	-2.2
1,109,863	-		GFF1107	0.57	+0.5
1,109,864	-		GFF1107	0.57	+0.4
1,109,864	-		GFF1107	0.57	-0.8
1,109,895	+		GFF1107	0.64	-0.7
1,109,900	+		GFF1107	0.65	+0.9
1,109,905	+		GFF1107	0.66	+0.1
1,109,905	+		GFF1107	0.66	+0.3
1,109,908	-		GFF1107	0.67	+0.2
1,109,908	-		GFF1107	0.67	-2.2
1,109,908	-		GFF1107	0.67	-0.7
1,109,908	-		GFF1107	0.67	-1.6
1,109,910	+		GFF1107	0.67	+0.1
1,109,913	-		GFF1107	0.68	+0.7
1,109,913	-		GFF1107	0.68	+0.6
1,109,914	-		GFF1107	0.68	+0.2