Strain Fitness in Sphingobium sp. HT1-2 around GFF1094

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,095,797	+		GFF1092	0.36	+2.0
1,095,798	-		GFF1092	0.36	-2.4
1,095,821	+		GFF1092	0.38	-0.6
1,095,829	-		GFF1092	0.39	-0.5
1,095,829	-		GFF1092	0.39	-1.2
1,095,829	-		GFF1092	0.39	-0.0
1,095,831	+		GFF1092	0.39	-0.5
1,095,857	+		GFF1092	0.42	+0.7
1,095,862	-		GFF1092	0.43	-0.9
1,095,865	-		GFF1092	0.43	-0.8
1,095,867	+		GFF1092	0.43	-1.9
1,095,875	-		GFF1092	0.44	+0.6
1,095,875	-		GFF1092	0.44	+0.2
1,095,899	+		GFF1092	0.47	-0.6
1,095,913	+		GFF1092	0.48	+0.5
1,095,913	+		GFF1092	0.48	+0.9
1,095,913	+		GFF1092	0.48	+0.2
1,095,913	+		GFF1092	0.48	+0.1
1,095,913	+		GFF1092	0.48	+0.3
1,095,913	+		GFF1092	0.48	-0.9
1,095,913	+		GFF1092	0.48	+0.0
1,095,913	+		GFF1092	0.48	-1.2
1,095,913	+		GFF1092	0.48	-1.5
1,095,913	+		GFF1092	0.48	-1.0
1,095,913	+		GFF1092	0.48	+0.2
1,095,913	+		GFF1092	0.48	-0.1
1,095,913	+		GFF1092	0.48	+0.2
1,095,913	+		GFF1092	0.48	+1.1
1,095,913	+		GFF1092	0.48	-2.4
1,095,913	+		GFF1092	0.48	+1.0
1,095,913	+		GFF1092	0.48	+0.8
1,095,913	+		GFF1092	0.48	-1.2
1,095,913	+		GFF1092	0.48	-1.4
1,095,918	+		GFF1092	0.49	-1.9
1,095,921	-		GFF1092	0.49	+1.4
1,095,921	-		GFF1092	0.49	-0.6
1,095,921	-		GFF1092	0.49	-0.7
1,095,921	-		GFF1092	0.49	+0.4
1,095,921	-		GFF1092	0.49	+0.5
1,095,921	-		GFF1092	0.49	-0.4
1,095,921	-		GFF1092	0.49	-1.2
1,095,921	-		GFF1092	0.49	-2.1
1,095,921	-		GFF1092	0.49	+0.8
1,095,921	-		GFF1092	0.49	-1.7
1,095,926	-		GFF1092	0.50	+1.2
1,095,939	+		GFF1092	0.51	-0.5
1,095,939	+		GFF1092	0.51	-1.6
1,095,945	-		GFF1092	0.52	-0.9
1,095,962	+		GFF1092	0.54	+0.1
1,095,965	-		GFF1092	0.54	-1.1
1,095,965	-		GFF1092	0.54	-1.2
1,095,970	-		GFF1092	0.54	-0.7
1,095,980	-		GFF1092	0.56	-0.8
1,096,000	-		GFF1092	0.58	-2.4
1,096,048	+		GFF1092	0.63	-2.2
1,096,048	+		GFF1092	0.63	-0.7
1,096,048	+		GFF1092	0.63	+1.5
1,096,056	-		GFF1092	0.64	+0.8
1,096,072	+		GFF1092	0.66	-2.6
1,096,072	-		GFF1092	0.66	+0.1
1,096,080	-		GFF1092	0.67	+0.9
1,096,080	-		GFF1092	0.67	+0.7
1,096,080	-		GFF1092	0.67	-0.5
1,096,080	-		GFF1092	0.67	-3.3
1,096,095	+		GFF1092	0.68	-1.4
1,096,113	-		GFF1092	0.70	-0.9
1,096,119	+		GFF1092	0.71	+0.1
1,096,121	-		GFF1092	0.71	+1.0
1,096,124	+		GFF1092	0.71	-1.1
1,096,129	+		GFF1092	0.72	-0.8
1,096,144	+		GFF1092	0.74	+1.2
1,096,147	-		GFF1092	0.74	-1.8
1,096,147	-		GFF1092	0.74	-1.5
1,096,204	-		GFF1092	0.80	+1.2
1,096,222	+		GFF1092	0.82	-1.4
1,096,222	+		GFF1092	0.82	-0.5
1,096,222	+		GFF1092	0.82	-0.7
1,096,230	-		GFF1092	0.83	-0.0
1,096,245	+		GFF1092	0.85	-0.5
1,096,245	+		GFF1092	0.85	-0.7
1,096,245	+		GFF1092	0.85	-1.5
1,096,245	+		GFF1092	0.85	-0.1
1,096,245	+		GFF1092	0.85	-1.1
1,096,245	+		GFF1092	0.85	+0.3
1,096,245	+		GFF1092	0.85	-1.1
1,096,245	+		GFF1092	0.85	+0.0
1,096,245	+		GFF1092	0.85	+0.4
1,096,245	+		GFF1092	0.85	+1.6
1,096,245	+		GFF1092	0.85	+1.2
1,096,245	+		GFF1092	0.85	-0.6
1,096,247	+		GFF1092	0.85	-0.5
1,096,248	-		GFF1092	0.85	-0.6
1,096,253	-		GFF1092	0.86	-0.7
1,096,253	-		GFF1092	0.86	-1.9
1,096,253	-		GFF1092	0.86	+0.2
1,096,253	-		GFF1092	0.86	+0.5
1,096,253	-		GFF1092	0.86	+0.9
1,096,253	-		GFF1092	0.86	-0.9
1,096,253	-		GFF1092	0.86	-1.2
1,096,253	-		GFF1092	0.86	-0.9
1,096,253	-		GFF1092	0.86	+0.1
1,096,295	+				+0.4
1,096,301	+				+0.0
1,096,301	+				+0.4
1,096,301	+				-0.9
1,096,301	+				-1.4
1,096,309	-				-0.3
1,096,309	-				-1.9
1,096,309	-				-1.7
1,096,309	-				-0.0
1,096,320	+				-0.2
1,096,322	+				-0.6
1,096,327	+				+0.9
1,096,328	-				-1.4
1,096,328	-				-1.7
1,096,330	-				+1.2
1,096,346	-				+0.1
1,096,358	+				+0.6
1,096,366	+				-0.9
1,096,366	+				+0.8
1,096,374	-				+0.4
1,096,374	-				-1.0
1,096,377	+				+0.3
1,096,385	-				-0.5
1,096,409	-				-0.8
1,096,411	+				+0.2
1,096,411	+				+1.2
1,096,411	+				-1.9
1,096,411	+				-0.3
1,096,411	+				-0.8
1,096,411	+				-0.4
1,096,411	+				-1.9
1,096,411	+				-1.2
1,096,411	+				-0.1
1,096,411	+				-0.4
1,096,411	+				-0.4
1,096,411	+				+1.8
1,096,411	+				-1.1
1,096,411	+				-0.1
1,096,419	-				-0.3
1,096,419	-				-1.6
1,096,419	-				+0.2
1,096,419	-				+0.7
1,096,419	-				+0.1
1,096,419	-				+0.0
1,096,419	-				+0.1
1,096,419	-				+0.6
1,096,419	-				+0.2
1,096,419	-				+0.4
1,096,419	-				-0.1
1,096,419	-				-0.2
1,096,419	-				-1.5
1,096,419	-				+0.5
1,096,419	-				-1.2
1,096,419	-				+0.0
1,096,421	+				+1.6
1,096,421	+				+0.7
1,096,422	+				-0.1
1,096,429	-				+0.6
1,096,444	-				+0.0
1,096,444	-				+0.4
1,096,446	+				+0.3
1,096,446	+				+0.8
1,096,452	-				-0.5
1,096,454	-				-0.1
1,096,454	-				+1.0
1,096,497	+				-0.7
1,096,497	+				-1.4
1,096,503	-				+0.1
1,096,505	-				+0.1
1,096,526	-		GFF1093	0.16	+0.6
1,096,533	-		GFF1093	0.18	-2.8
1,096,549	+		GFF1093	0.24	+0.1
1,096,554	+		GFF1093	0.25	-0.2
1,096,557	-		GFF1093	0.26	-0.4
1,096,557	-		GFF1093	0.26	-1.0
1,096,562	-		GFF1093	0.28	-1.8
1,096,566	+		GFF1093	0.29	-0.6
1,096,578	+		GFF1093	0.33	-1.8
1,096,584	-		GFF1093	0.35	-1.6
1,096,586	-		GFF1093	0.36	-1.5
1,096,591	-		GFF1093	0.38	+0.6
1,096,600	+		GFF1093	0.41	-1.2
1,096,600	+		GFF1093	0.41	-0.2
1,096,602	+		GFF1093	0.41	-0.6
1,096,605	+		GFF1093	0.42	-0.5
1,096,608	-		GFF1093	0.43	+0.8
1,096,608	-		GFF1093	0.43	+1.0
1,096,610	+		GFF1093	0.44	-0.3
1,096,610	+		GFF1093	0.44	+0.7
1,096,610	+		GFF1093	0.44	+0.2
1,096,610	+		GFF1093	0.44	+0.1
1,096,610	-		GFF1093	0.44	+0.8
1,096,613	-		GFF1093	0.45	-0.4
1,096,613	-		GFF1093	0.45	-1.4
1,096,613	-		GFF1093	0.45	-0.2
1,096,618	-		GFF1093	0.47	+0.0
1,096,619	-		GFF1093	0.47	+0.1
1,096,625	+		GFF1093	0.49	-0.6
1,096,631	+		GFF1093	0.51	-1.5
1,096,632	+		GFF1093	0.52	-1.2
1,096,632	+		GFF1093	0.52	-0.3
1,096,640	-		GFF1093	0.54	-0.7
1,096,640	-		GFF1093	0.54	+0.7
1,096,640	-		GFF1093	0.54	+0.4
1,096,640	-		GFF1093	0.54	-0.6
1,096,640	-		GFF1093	0.54	-1.2
1,096,640	-		GFF1093	0.54	+1.3
1,096,653	-		GFF1093	0.59	-1.5
1,096,663	+		GFF1093	0.62	-1.6
1,096,683	-		GFF1093	0.69	-1.9
1,096,686	+		GFF1093	0.70	-2.2
1,096,705	+		GFF1093	0.76	-0.5
1,096,715	+		GFF1093	0.79	-2.8
1,096,746	-				+0.3
1,096,769	+				+1.7
1,096,769	+				-1.0
1,096,769	+				-0.8
1,096,769	+				-0.6
1,096,769	+				-1.9
1,096,769	+				-0.9
1,096,769	+				-0.3
1,096,771	-				-0.3
1,096,774	+				-0.6
1,096,774	+				+0.1
1,096,774	+				-1.2
1,096,774	+				-0.2
1,096,774	+				-0.2
1,096,777	-				-0.4
1,096,777	-				-0.5
1,096,782	-				-0.1
1,096,782	-				-0.1
1,096,782	-				+0.9
1,096,782	-				-1.2
1,096,792	-				+1.1
1,096,796	+				+0.2
1,096,796	+				-0.7
1,096,796	+				-0.2
1,096,796	+				-0.3
1,096,796	+				+0.1
1,096,796	+				-1.2
1,096,796	+				-1.9
1,096,796	+				-1.2
1,096,796	+				-2.0
1,096,796	+				-2.6
1,096,796	+				-0.4
1,096,796	+				+0.6
1,096,796	+				+0.8
1,096,796	+				-0.1
1,096,796	+				-0.7
1,096,801	+				+0.6
1,096,804	-				+0.5
1,096,804	-				+0.1
1,096,804	-				-0.2
1,096,804	-				+1.2
1,096,804	-				-0.5
1,096,804	-				+0.5
1,096,804	-				+0.1
1,096,804	-				+0.6
1,096,804	-				-0.4
1,096,804	-				-1.8
1,096,804	-				+0.6
1,096,804	-				-0.4
1,096,804	-				-0.4
1,096,804	-				+1.2
1,096,804	-				+1.2
1,096,804	-				-1.3
1,096,809	-				-0.9
1,096,812	-				-0.1
1,096,814	-				-2.3
1,096,816	-				+0.1
1,096,825	-				+0.4
1,096,825	-				+0.1
1,096,841	+				-1.2
1,096,841	+				-1.5
1,096,846	+				-0.7
1,096,846	+				-0.4
1,096,846	+				+1.1
1,096,846	+				+1.5
1,096,849	-				-0.6
1,096,849	-				+0.2
1,096,851	+				+0.0
1,096,859	+				+0.1
1,096,861	+				+1.8
1,096,861	+				-0.2
1,096,861	+				-1.7
1,096,869	-				-1.6
1,096,869	-				-0.7
1,096,893	+		GFF1094	0.12	-1.2
1,096,914	+		GFF1094	0.14	-1.3
1,096,924	+		GFF1094	0.15	-0.5
1,096,931	+		GFF1094	0.16	+1.0
1,096,931	+		GFF1094	0.16	+0.4
1,096,931	+		GFF1094	0.16	+0.5
1,096,931	+		GFF1094	0.16	-0.5
1,096,931	+		GFF1094	0.16	-1.8
1,096,939	-		GFF1094	0.17	+0.4
1,096,939	-		GFF1094	0.17	-0.4
1,096,939	-		GFF1094	0.17	+0.7
1,096,939	-		GFF1094	0.17	+0.1
1,096,940	+		GFF1094	0.17	-1.1
1,096,942	+		GFF1094	0.17	+0.5
1,096,942	+		GFF1094	0.17	-0.6
1,096,942	+		GFF1094	0.17	-1.1
1,096,942	+		GFF1094	0.17	-0.8
1,096,942	+		GFF1094	0.17	-1.9
1,096,942	+		GFF1094	0.17	-0.1
1,096,942	+		GFF1094	0.17	+0.7
1,096,942	+		GFF1094	0.17	-0.1
1,096,942	+		GFF1094	0.17	+0.1
1,096,942	+		GFF1094	0.17	+0.6
1,096,942	+		GFF1094	0.17	-2.2
1,096,947	+		GFF1094	0.18	+0.7
1,096,947	+		GFF1094	0.18	+0.4
1,096,948	-		GFF1094	0.18	-1.1
1,096,948	-		GFF1094	0.18	+0.1
1,096,948	-		GFF1094	0.18	-1.1
1,096,948	-		GFF1094	0.18	+1.0
1,096,950	-		GFF1094	0.18	+0.7
1,096,950	-		GFF1094	0.18	-0.7
1,096,950	-		GFF1094	0.18	-0.6
1,096,950	-		GFF1094	0.18	-0.1
1,096,950	-		GFF1094	0.18	+1.0
1,096,950	-		GFF1094	0.18	+0.7
1,096,950	-		GFF1094	0.18	-1.2
1,096,950	-		GFF1094	0.18	+0.5
1,096,950	-		GFF1094	0.18	+0.3
1,096,952	+		GFF1094	0.19	-1.6
1,096,952	+		GFF1094	0.19	+0.4
1,096,952	+		GFF1094	0.19	+0.4
1,096,952	+		GFF1094	0.19	-0.8
1,096,957	+		GFF1094	0.19	+0.7
1,096,959	+		GFF1094	0.19	-0.4
1,096,965	-		GFF1094	0.20	-0.8
1,096,965	-		GFF1094	0.20	-0.8
1,096,972	-		GFF1094	0.21	+0.6
1,096,977	-		GFF1094	0.21	-2.1
1,096,979	+		GFF1094	0.22	-0.6
1,097,004	-		GFF1094	0.24	+0.7
1,097,004	-		GFF1094	0.24	+0.1
1,097,004	-		GFF1094	0.24	+0.6
1,097,004	-		GFF1094	0.24	-0.1
1,097,011	+		GFF1094	0.25	+1.3
1,097,019	-		GFF1094	0.26	+0.0
1,097,019	-		GFF1094	0.26	+2.0
1,097,019	-		GFF1094	0.26	-0.8
1,097,029	-		GFF1094	0.27	-1.1
1,097,030	+		GFF1094	0.27	-1.5
1,097,052	+		GFF1094	0.30	+0.0
1,097,052	+		GFF1094	0.30	-2.2
1,097,055	-		GFF1094	0.30	-1.0
1,097,055	-		GFF1094	0.30	-1.5
1,097,065	-		GFF1094	0.31	+0.2
1,097,092	-		GFF1094	0.34	+0.4
1,097,092	-		GFF1094	0.34	+0.9
1,097,103	+		GFF1094	0.35	+0.4
1,097,106	+		GFF1094	0.36	+0.7
1,097,130	+		GFF1094	0.38	-1.4
1,097,130	+		GFF1094	0.38	+0.2
1,097,130	+		GFF1094	0.38	+1.6
1,097,139	+		GFF1094	0.39	-0.6
1,097,141	-		GFF1094	0.40	-0.7
1,097,147	-		GFF1094	0.40	-0.1
1,097,147	-		GFF1094	0.40	-0.1
1,097,150	+		GFF1094	0.41	+0.6
1,097,178	+		GFF1094	0.44	+0.0
1,097,178	+		GFF1094	0.44	-1.9
1,097,178	+		GFF1094	0.44	-1.4
1,097,178	+		GFF1094	0.44	-0.7
1,097,178	+		GFF1094	0.44	-0.4
1,097,178	+		GFF1094	0.44	+0.3
1,097,178	+		GFF1094	0.44	-0.6
1,097,178	+		GFF1094	0.44	-0.4
1,097,178	+		GFF1094	0.44	+0.5
1,097,179	+		GFF1094	0.44	-1.8
1,097,180	+		GFF1094	0.44	+0.1
1,097,186	-		GFF1094	0.45	+0.7
1,097,186	-		GFF1094	0.45	-0.5
1,097,186	-		GFF1094	0.45	-0.7
1,097,186	-		GFF1094	0.45	-1.2
1,097,186	-		GFF1094	0.45	+0.5
1,097,186	-		GFF1094	0.45	+0.9
1,097,186	-		GFF1094	0.45	+0.6
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1,097,297	-		GFF1094	0.57	-2.1
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