Strain Fitness in Sphingobium sp. HT1-2 around GFF1076

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,082,332	-		GFF1075	0.37	-0.7
1,082,337	+		GFF1075	0.37	-1.2
1,082,929	+				-2.3
1,082,937	-				-0.6
1,082,982	+				+0.0
1,082,985	-				-0.7
1,082,985	-				-0.3
1,082,990	-				+0.1
1,083,001	+				-0.1
1,083,001	+				+0.6
1,083,016	-				+0.3
1,083,060	+				+1.2
1,083,076	-				+0.4
1,083,093	+				+1.7
1,083,096	-				+0.1
1,083,096	-				+0.2
1,083,097	+				+0.0
1,083,101	-				-0.3
1,083,144	+				-2.1
1,083,145	+				+0.6
1,083,145	+				-0.0
1,083,145	+				-1.3
1,083,145	-				+1.4
1,083,146	+				+1.1
1,083,153	-				+0.0
1,083,209	-				+1.0
1,083,212	+				-1.6
1,083,253	+				-1.3
1,083,253	+				-0.0
1,083,253	+				-0.3
1,083,253	+				+1.0
1,083,256	-				+1.4
1,083,261	-				-0.4
1,083,261	-				-0.3
1,083,261	-				-0.7
1,083,261	-				+0.8
1,083,261	-				-0.7
1,083,261	-				+0.4
1,083,261	-				-0.2
1,083,272	-				+0.7
1,083,274	+				-0.8
1,083,293	+				+0.8
1,083,293	+				-2.4
1,083,327	+				-0.4
1,083,328	+				+0.2
1,083,328	+				+0.0
1,083,329	+				-1.3
1,083,336	-		GFF1076	0.10	+0.3
1,083,336	-		GFF1076	0.10	-0.7
1,083,337	-		GFF1076	0.10	+0.4
1,083,337	-		GFF1076	0.10	+0.3
1,083,346	+		GFF1076	0.11	+0.9
1,083,348	+		GFF1076	0.11	+0.1
1,083,351	+		GFF1076	0.11	-1.6
1,083,356	+		GFF1076	0.11	-1.6
1,083,375	+		GFF1076	0.12	+0.7
1,083,423	+		GFF1076	0.15	-0.3
1,083,429	+		GFF1076	0.15	-1.2
1,083,431	-		GFF1076	0.15	+0.9
1,083,431	-		GFF1076	0.15	+0.9
1,083,437	+		GFF1076	0.16	-1.4
1,083,444	-		GFF1076	0.16	-1.6
1,083,445	-		GFF1076	0.16	-0.5
1,083,460	+		GFF1076	0.17	-1.9
1,083,460	+		GFF1076	0.17	+0.6
1,083,460	+		GFF1076	0.17	+1.2
1,083,460	+		GFF1076	0.17	+0.3
1,083,460	+		GFF1076	0.17	+0.1
1,083,464	-		GFF1076	0.17	+0.9
1,083,468	-		GFF1076	0.18	+0.7
1,083,468	-		GFF1076	0.18	+1.0
1,083,468	-		GFF1076	0.18	-0.1
1,083,551	+		GFF1076	0.22	+0.1
1,083,551	+		GFF1076	0.22	+0.9
1,083,559	-		GFF1076	0.23	-0.8
1,083,564	-		GFF1076	0.23	+1.2
1,083,581	-		GFF1076	0.24	-1.9
1,083,581	-		GFF1076	0.24	+1.1
1,083,583	+		GFF1076	0.24	-2.2
1,083,586	-		GFF1076	0.24	+0.7
1,083,586	-		GFF1076	0.24	-0.2
1,083,596	+		GFF1076	0.25	+0.1
1,083,596	-		GFF1076	0.25	-1.4
1,083,604	-		GFF1076	0.25	-0.2
1,083,616	+		GFF1076	0.26	+0.3
1,083,616	+		GFF1076	0.26	-0.1
1,083,616	+		GFF1076	0.26	-0.5
1,083,621	+		GFF1076	0.26	+0.8
1,083,624	-		GFF1076	0.26	-1.7
1,083,629	-		GFF1076	0.27	+1.3
1,083,648	+		GFF1076	0.28	-0.2
1,083,665	+		GFF1076	0.29	+0.0
1,083,665	+		GFF1076	0.29	-2.1
1,083,665	+		GFF1076	0.29	-0.3
1,083,665	+		GFF1076	0.29	+0.8
1,083,665	+		GFF1076	0.29	+1.1
1,083,665	+		GFF1076	0.29	-0.8
1,083,665	+		GFF1076	0.29	-2.2
1,083,666	+		GFF1076	0.29	-0.9
1,083,666	+		GFF1076	0.29	+0.2
1,083,669	-		GFF1076	0.29	-0.2
1,083,671	-		GFF1076	0.29	+0.2
1,083,673	-		GFF1076	0.29	-0.3
1,083,673	-		GFF1076	0.29	-0.9
1,083,673	-		GFF1076	0.29	+0.5
1,083,673	-		GFF1076	0.29	-0.1
1,083,673	-		GFF1076	0.29	-0.9
1,083,673	-		GFF1076	0.29	-0.4
1,083,673	-		GFF1076	0.29	-1.1
1,083,693	-		GFF1076	0.30	-0.2
1,083,695	-		GFF1076	0.30	-0.2
1,083,700	-		GFF1076	0.31	-1.3
1,083,702	+		GFF1076	0.31	+0.1
1,083,702	+		GFF1076	0.31	-1.3
1,083,710	-		GFF1076	0.31	-1.3
1,083,721	+		GFF1076	0.32	-1.3
1,083,736	+		GFF1076	0.33	+1.2
1,083,741	+		GFF1076	0.33	-0.5
1,083,744	-		GFF1076	0.33	+1.1
1,083,744	-		GFF1076	0.33	+0.3
1,083,744	-		GFF1076	0.33	-1.0
1,083,748	-		GFF1076	0.33	-0.5
1,083,749	-		GFF1076	0.33	-2.8
1,083,759	+		GFF1076	0.34	-1.8
1,083,771	+		GFF1076	0.35	-0.1
1,083,778	+		GFF1076	0.35	-0.3
1,083,778	+		GFF1076	0.35	-2.6
1,083,791	-		GFF1076	0.36	-0.2
1,083,791	-		GFF1076	0.36	-0.7
1,083,792	-		GFF1076	0.36	-0.1
1,083,825	+		GFF1076	0.38	+0.3
1,083,830	-		GFF1076	0.38	-2.2
1,083,830	-		GFF1076	0.38	+1.3
1,083,840	+		GFF1076	0.38	+1.5
1,083,848	-		GFF1076	0.39	-0.8
1,083,848	-		GFF1076	0.39	-1.1
1,083,853	+		GFF1076	0.39	+0.4
1,083,868	-		GFF1076	0.40	-0.6
1,083,870	+		GFF1076	0.40	-0.7
1,083,913	-		GFF1076	0.43	-0.3
1,083,915	-		GFF1076	0.43	-0.0
1,083,919	+		GFF1076	0.43	+1.0
1,083,926	-		GFF1076	0.43	-1.5
1,083,926	-		GFF1076	0.43	+1.6
1,083,940	+		GFF1076	0.44	+0.4
1,083,970	-		GFF1076	0.46	+0.0
1,083,975	+		GFF1076	0.46	+0.7
1,083,986	+		GFF1076	0.47	-0.5
1,083,986	+		GFF1076	0.47	-0.1
1,083,993	+		GFF1076	0.47	+1.6
1,083,994	-		GFF1076	0.47	-0.2
1,084,045	+		GFF1076	0.50	+0.5
1,084,045	+		GFF1076	0.50	-1.3
1,084,050	-		GFF1076	0.50	-2.5
1,084,067	+		GFF1076	0.51	-0.7
1,084,091	-		GFF1076	0.53	+0.7
1,084,094	-		GFF1076	0.53	+0.8
1,084,130	+		GFF1076	0.55	+1.3
1,084,141	+		GFF1076	0.55	-0.6
1,084,141	+		GFF1076	0.55	-0.3
1,084,174	+		GFF1076	0.57	-0.5
1,084,178	+		GFF1076	0.57	-2.2
1,084,178	+		GFF1076	0.57	-1.6
1,084,180	+		GFF1076	0.58	-1.7
1,084,186	-		GFF1076	0.58	+1.1
1,084,186	-		GFF1076	0.58	+0.2
1,084,186	-		GFF1076	0.58	+1.1
1,084,191	-		GFF1076	0.58	-1.2
1,084,237	-		GFF1076	0.61	-0.5
1,084,253	-		GFF1076	0.62	+0.7
1,084,254	+		GFF1076	0.62	-1.0
1,084,257	+		GFF1076	0.62	-0.2
1,084,263	+		GFF1076	0.62	+0.2
1,084,264	+		GFF1076	0.62	-0.1
1,084,264	+		GFF1076	0.62	-0.1
1,084,264	+		GFF1076	0.62	+0.3
1,084,264	+		GFF1076	0.62	-0.7
1,084,264	+		GFF1076	0.62	+1.2
1,084,264	+		GFF1076	0.62	-0.7
1,084,264	+		GFF1076	0.62	-0.3
1,084,264	+		GFF1076	0.62	+0.0
1,084,264	+		GFF1076	0.62	+1.2
1,084,264	+		GFF1076	0.62	+0.0
1,084,264	+		GFF1076	0.62	+0.7
1,084,264	+		GFF1076	0.62	-0.8
1,084,264	+		GFF1076	0.62	+0.8
1,084,272	-		GFF1076	0.63	+1.3
1,084,272	-		GFF1076	0.63	-0.9
1,084,272	-		GFF1076	0.63	+0.6
1,084,272	-		GFF1076	0.63	-1.5
1,084,272	-		GFF1076	0.63	+1.5
1,084,272	-		GFF1076	0.63	-0.2
1,084,272	-		GFF1076	0.63	-1.3
1,084,272	-		GFF1076	0.63	-0.9
1,084,272	-		GFF1076	0.63	-0.8
1,084,272	-		GFF1076	0.63	+0.3
1,084,272	-		GFF1076	0.63	-0.2
1,084,274	+		GFF1076	0.63	+0.6
1,084,282	-		GFF1076	0.63	+1.1
1,084,282	-		GFF1076	0.63	-1.3
1,084,296	-		GFF1076	0.64	+0.9
1,084,305	-		GFF1076	0.65	-1.6
1,084,323	+		GFF1076	0.66	-0.5
1,084,333	+		GFF1076	0.66	+0.9
1,084,336	-		GFF1076	0.66	-0.8
1,084,336	-		GFF1076	0.66	-0.1
1,084,336	-		GFF1076	0.66	+0.2
1,084,344	+		GFF1076	0.67	-0.5
1,084,344	+		GFF1076	0.67	+0.9
1,084,352	-		GFF1076	0.67	+0.3
1,084,354	+		GFF1076	0.67	+0.0
1,084,354	+		GFF1076	0.67	-1.0
1,084,361	+		GFF1076	0.68	-1.9
1,084,369	-		GFF1076	0.68	+0.2
1,084,392	-		GFF1076	0.69	+0.4
1,084,425	-		GFF1076	0.71	-1.7
1,084,425	-		GFF1076	0.71	-0.9
1,084,429	+		GFF1076	0.72	-1.1
1,084,451	+		GFF1076	0.73	-0.3
1,084,457	-		GFF1076	0.73	-0.3
1,084,459	-		GFF1076	0.73	-1.3
1,084,466	+		GFF1076	0.74	+0.2
1,084,474	+		GFF1076	0.74	-1.1
1,084,474	-		GFF1076	0.74	+0.5
1,084,480	+		GFF1076	0.74	+0.4
1,084,480	+		GFF1076	0.74	-1.4
1,084,482	-		GFF1076	0.75	-1.7
1,084,485	+		GFF1076	0.75	-0.2
1,084,512	-		GFF1076	0.76	-2.9
1,084,512	-		GFF1076	0.76	-0.6
1,084,533	+		GFF1076	0.77	-0.1
1,084,541	-		GFF1076	0.78	+1.5
1,084,586	-		GFF1076	0.80	-1.7
1,084,586	-		GFF1076	0.80	-1.9
1,084,616	+		GFF1076	0.82	+0.2
1,084,622	+		GFF1076	0.82	-0.9
1,084,622	+		GFF1076	0.82	-1.1
1,084,630	-		GFF1076	0.83	-2.5
1,084,630	-		GFF1076	0.83	-0.2
1,084,630	-		GFF1076	0.83	-0.2
1,084,630	-		GFF1076	0.83	-0.6
1,084,630	-		GFF1076	0.83	+0.9
1,084,630	-		GFF1076	0.83	+0.1
1,084,635	-		GFF1076	0.83	+1.4
1,084,644	+		GFF1076	0.84	+0.7
1,084,644	+		GFF1076	0.84	-0.1
1,084,726	+		GFF1076	0.88	+0.4
1,084,739	-		GFF1076	0.89	-0.5
1,084,741	+		GFF1076	0.89	-0.7
1,084,761	+				-0.0
1,084,772	+				-0.0
1,084,777	+				-1.2
1,084,780	-				-0.7
1,084,780	-				+0.1
1,084,780	-				-0.3
1,084,787	+				-0.5
1,084,810	+				-0.1
1,084,818	-				-1.3
1,084,909	+				+0.6
1,084,920	+				+1.1
1,084,922	+				-0.0
1,084,922	+				-0.9
1,084,922	+				+0.1
1,084,922	+				+0.4
1,084,922	-				+0.2
1,084,928	-				-0.6
1,084,928	-				+0.1
1,084,928	-				+0.0
1,084,929	+				+1.3
1,084,929	+				-0.1
1,084,929	+				+0.7
1,084,929	+				-0.1
1,084,929	+				+0.3
1,084,929	+				+1.3
1,084,929	+				+0.1
1,084,929	+				-0.6
1,084,929	+				+1.0
1,084,929	+				-0.3
1,084,929	+				+0.2
1,084,929	+				-0.3
1,084,929	+				-0.0
1,084,937	-				+1.6
1,084,937	-				-0.9
1,084,937	-				+0.2
1,084,937	-				-0.0
1,084,937	-				-1.9
1,084,937	-				-2.2
1,084,937	-				+1.2
1,084,937	-				+0.7
1,084,937	-				-1.0
1,084,937	-				+0.3
1,084,937	-				-0.4
1,084,937	-				+0.1
1,084,937	-				-0.9
1,084,937	-				-0.8
1,084,937	-				-1.2
1,084,937	-				-0.2
1,084,937	-				-2.4
1,084,937	-				+1.6
1,084,937	-				-1.0
1,084,948	+				-0.5
1,084,948	+				-1.3
1,084,956	-				+0.9
1,085,025	-		GFF1077	0.18	+0.5
1,085,025	-		GFF1077	0.18	-0.6
1,085,030	-		GFF1077	0.20	+1.2
1,085,032	+		GFF1077	0.20	-0.3
1,085,040	-		GFF1077	0.22	+0.3
1,085,047	-		GFF1077	0.24	+0.7
1,085,047	-		GFF1077	0.24	-0.9
1,085,090	+		GFF1077	0.35	+1.6
1,085,095	+		GFF1077	0.36	-1.6
1,085,095	+		GFF1077	0.36	-0.5
1,085,095	+		GFF1077	0.36	-1.5
1,085,129	-		GFF1077	0.44	-0.5
1,085,129	-		GFF1077	0.44	+0.0
1,085,145	+		GFF1077	0.48	-0.0
1,085,147	-		GFF1077	0.49	+0.9
1,085,150	+		GFF1077	0.50	+0.7
1,085,150	+		GFF1077	0.50	+0.5
1,085,150	+		GFF1077	0.50	-1.9
1,085,150	+		GFF1077	0.50	-0.5
1,085,153	+		GFF1077	0.50	-0.8
1,085,153	+		GFF1077	0.50	-0.2
1,085,153	+		GFF1077	0.50	+0.3
1,085,153	+		GFF1077	0.50	+1.1
1,085,153	+		GFF1077	0.50	-1.2
1,085,153	+		GFF1077	0.50	+0.2
1,085,153	+		GFF1077	0.50	-2.3
1,085,153	+		GFF1077	0.50	-1.3
1,085,153	+		GFF1077	0.50	-1.4
1,085,153	+		GFF1077	0.50	-0.2
1,085,153	+		GFF1077	0.50	-1.3
1,085,153	+		GFF1077	0.50	+0.2
1,085,153	-		GFF1077	0.50	+1.8
1,085,155	+		GFF1077	0.51	+0.2
1,085,155	+		GFF1077	0.51	+0.0
1,085,155	+		GFF1077	0.51	+0.4
1,085,158	-		GFF1077	0.51	-1.3
1,085,158	-		GFF1077	0.51	+0.8
1,085,158	-		GFF1077	0.51	-0.8
1,085,158	-		GFF1077	0.51	+0.3
1,085,158	-		GFF1077	0.51	+0.6
1,085,158	-		GFF1077	0.51	+1.7
1,085,158	-		GFF1077	0.51	-0.8
1,085,161	-		GFF1077	0.52	+0.3
1,085,161	-		GFF1077	0.52	-1.2
1,085,161	-		GFF1077	0.52	+0.0
1,085,161	-		GFF1077	0.52	-0.7
1,085,163	-		GFF1077	0.53	+0.2
1,085,163	-		GFF1077	0.53	-1.1
1,085,171	+		GFF1077	0.55	-0.9
1,085,199	-		GFF1077	0.62	-1.6
1,085,220	+		GFF1077	0.67	-0.6
1,085,223	-		GFF1077	0.68	+0.6
1,085,223	-		GFF1077	0.68	-2.4
1,085,223	-		GFF1077	0.68	+0.4
1,085,228	+		GFF1077	0.69	+0.4
1,085,232	+		GFF1077	0.70	+1.3
1,085,236	-		GFF1077	0.71	-0.5
1,085,240	-		GFF1077	0.72	-1.5
1,085,240	-		GFF1077	0.72	-0.5
1,085,250	-		GFF1077	0.74	-1.1
1,085,258	+		GFF1077	0.76	-1.2
1,085,292	+		GFF1077	0.85	+0.0
1,085,300	+		GFF1077	0.87	-0.6
1,085,300	-		GFF1077	0.87	-0.3
1,085,306	+		GFF1077	0.88	+0.5
1,085,328	+				-2.5
1,085,328	+				+0.1
1,085,334	+				-0.3
1,085,336	-				-0.2
1,085,360	+				+0.2
1,085,407	+				+1.0
1,085,415	-				-0.9
1,085,456	+				+1.5
1,085,469	-				-3.2
1,085,478	+				-0.2
1,085,491	+				-0.1
1,085,512	+		GFF1078	0.13	+0.4
1,085,520	-		GFF1078	0.14	-0.0
1,085,520	-		GFF1078	0.14	+0.4
1,085,522	-		GFF1078	0.14	-0.0
1,085,563	+		GFF1078	0.20	-0.9
1,085,568	+		GFF1078	0.20	+0.7
1,085,568	+		GFF1078	0.20	+1.1
1,085,568	+		GFF1078	0.20	-0.1
1,085,568	+		GFF1078	0.20	+0.5
1,085,576	-		GFF1078	0.21	-1.1
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1,085,589	-		GFF1078	0.23	-1.7
1,085,591	+		GFF1078	0.24	-2.2
1,085,599	-		GFF1078	0.25	-0.2
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1,085,630	+		GFF1078	0.29	+1.2
1,085,636	-		GFF1078	0.30	-1.3
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1,085,669	+		GFF1078	0.34	-1.5
1,085,677	+		GFF1078	0.35	-0.3
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1,085,694	+		GFF1078	0.38	-1.1
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1,085,694	+		GFF1078	0.38	-1.9
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1,085,702	-		GFF1078	0.39	-2.3
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1,085,718	-		GFF1078	0.41	+0.1
1,085,718	-		GFF1078	0.41	-1.9
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1,085,738	-		GFF1078	0.44	+1.6
1,085,745	+		GFF1078	0.45	+0.1
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1,085,788	-		GFF1078	0.51	-0.4
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1,085,818	+		GFF1078	0.55	-1.3
1,085,829	+		GFF1078	0.56	+0.4
1,085,837	-		GFF1078	0.58	+0.9
1,085,853	-		GFF1078	0.60	-0.6
1,085,856	+		GFF1078	0.60	-1.6
1,085,870	+		GFF1078	0.62	+0.5
1,085,882	-		GFF1078	0.64	-2.0
1,085,884	-		GFF1078	0.64	-0.0
1,085,925	-		GFF1078	0.70	-0.8