Strain Fitness in Sphingobium sp. HT1-2 around GFF1048

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,054,788	-		GFF1047	0.69	-1.6
1,054,788	-		GFF1047	0.69	+0.2
1,054,790	+		GFF1047	0.69	+0.8
1,054,798	+		GFF1047	0.69	+0.9
1,054,798	+		GFF1047	0.69	-1.6
1,054,798	-		GFF1047	0.69	+1.4
1,054,844	+		GFF1047	0.71	+0.7
1,054,851	+		GFF1047	0.71	+0.7
1,054,876	-		GFF1047	0.72	-0.0
1,054,917	-		GFF1047	0.73	-0.8
1,054,921	-		GFF1047	0.73	+1.0
1,055,006	+		GFF1047	0.76	+0.3
1,055,023	+		GFF1047	0.77	-0.5
1,055,033	+		GFF1047	0.77	-0.6
1,055,063	-		GFF1047	0.78	-0.2
1,055,063	-		GFF1047	0.78	+0.2
1,055,071	-		GFF1047	0.78	-0.7
1,055,078	-		GFF1047	0.79	-1.9
1,055,123	-		GFF1047	0.80	-1.5
1,055,168	-		GFF1047	0.82	+1.2
1,055,235	-		GFF1047	0.84	-0.5
1,055,235	-		GFF1047	0.84	-0.3
1,055,237	+		GFF1047	0.84	+0.4
1,055,291	-		GFF1047	0.86	-0.8
1,055,291	-		GFF1047	0.86	-2.0
1,055,299	+		GFF1047	0.86	-0.8
1,055,336	-		GFF1047	0.87	-0.3
1,055,348	-		GFF1047	0.88	-0.2
1,055,368	+		GFF1047	0.88	-0.3
1,055,383	+		GFF1047	0.89	+0.8
1,055,383	+		GFF1047	0.89	-2.2
1,055,383	+		GFF1047	0.89	-0.8
1,055,391	-		GFF1047	0.89	-1.6
1,055,391	-		GFF1047	0.89	+0.4
1,055,428	-				-1.9
1,055,440	-				-1.8
1,055,593	+				+0.4
1,055,599	-				+0.1
1,055,607	+				-1.2
1,055,608	-				-0.5
1,055,612	+				-1.5
1,055,639	-				-0.5
1,055,641	+				-0.7
1,055,641	+				+0.7
1,055,680	+				-0.0
1,055,680	+				-0.6
1,055,688	-				-1.6
1,055,700	+				-0.5
1,055,708	-				+1.2
1,055,735	+		GFF1048	0.13	-1.8
1,055,736	-		GFF1048	0.14	+0.9
1,055,753	-		GFF1048	0.28	-0.3
1,055,753	-		GFF1048	0.28	+1.2
1,055,766	+		GFF1048	0.39	+1.3
1,055,766	+		GFF1048	0.39	-0.4
1,055,766	+		GFF1048	0.39	-0.8
1,055,766	+		GFF1048	0.39	-1.0
1,055,774	-		GFF1048	0.46	-1.6
1,055,774	-		GFF1048	0.46	+1.8
1,055,774	-		GFF1048	0.46	+1.8
1,055,774	-		GFF1048	0.46	-1.8
1,055,774	-		GFF1048	0.46	+1.6
1,055,782	-		GFF1048	0.53	-0.3
1,055,782	-		GFF1048	0.53	-0.8
1,055,782	-		GFF1048	0.53	+0.5
1,055,804	+		GFF1048	0.72	+1.1
1,055,812	-		GFF1048	0.79	+1.6
1,055,812	-		GFF1048	0.79	-0.2
1,055,828	-				+0.2
1,055,830	+				-1.6
1,055,836	-				+1.6
1,055,845	+				-0.1
1,055,855	-				-1.1
1,055,869	-				+0.8
1,055,902	-				+1.0
1,056,029	+				-0.1
1,056,047	-				+2.1
1,056,054	+				-2.3
1,056,054	+				+0.3
1,056,062	-				-1.7
1,056,062	-				+0.3
1,056,062	-				+0.7
1,056,083	+				-0.3
1,056,099	+				+0.7
1,056,121	+				+1.2
1,056,121	+				+0.5
1,056,121	+				+0.3
1,056,121	+				-0.3
1,056,131	+				+0.8
1,056,131	+				-1.7
1,056,134	-				-0.2
1,056,139	-				-0.1
1,056,146	+				-0.5
1,056,149	-				+1.0
1,056,216	+		GFF1049	0.21	+0.9
1,056,242	+		GFF1049	0.26	-2.4
1,056,250	-		GFF1049	0.27	-0.1
1,056,252	+		GFF1049	0.28	+0.1
1,056,252	+		GFF1049	0.28	+0.4
1,056,260	-		GFF1049	0.29	+1.9
1,056,265	-		GFF1049	0.30	+0.0
1,056,270	+		GFF1049	0.31	-0.3
1,056,273	-		GFF1049	0.32	+1.7
1,056,301	-		GFF1049	0.37	-2.0
1,056,318	+		GFF1049	0.40	+0.3
1,056,320	+		GFF1049	0.40	+0.9
1,056,326	-		GFF1049	0.41	-1.2
1,056,328	+		GFF1049	0.42	+1.7
1,056,328	-		GFF1049	0.42	+0.2
1,056,336	-		GFF1049	0.43	-1.3
1,056,336	-		GFF1049	0.43	+0.4
1,056,347	+		GFF1049	0.45	-0.2
1,056,347	+		GFF1049	0.45	+0.6
1,056,354	+		GFF1049	0.47	+1.1
1,056,354	+		GFF1049	0.47	+0.2
1,056,357	-		GFF1049	0.47	-0.6
1,056,368	+		GFF1049	0.49	-0.8
1,056,469	+		GFF1049	0.68	-0.4
1,056,474	+		GFF1049	0.69	+0.6
1,056,493	+		GFF1049	0.72	-0.8
1,056,493	+		GFF1049	0.72	-0.1
1,056,493	+		GFF1049	0.72	-0.7
1,056,497	-		GFF1049	0.73	+0.6
1,056,497	-		GFF1049	0.73	-0.3
1,056,508	+		GFF1049	0.75	+0.6
1,056,516	-		GFF1049	0.76	+1.7
1,056,531	-		GFF1049	0.79	-1.7
1,056,531	-		GFF1049	0.79	-1.1
1,056,531	-		GFF1049	0.79	-0.9
1,056,541	+		GFF1049	0.81	-1.7
1,056,541	+		GFF1049	0.81	-1.3
1,056,541	+		GFF1049	0.81	-0.7
1,056,541	+		GFF1049	0.81	-0.8
1,056,541	+		GFF1049	0.81	-0.2
1,056,541	+		GFF1049	0.81	-1.8
1,056,541	+		GFF1049	0.81	-0.9
1,056,541	+		GFF1049	0.81	-0.3
1,056,546	+		GFF1049	0.82	+1.6
1,056,549	-		GFF1049	0.83	+1.4
1,056,549	-		GFF1049	0.83	-0.6
1,056,549	-		GFF1049	0.83	+0.2
1,056,549	-		GFF1049	0.83	-1.7
1,056,549	-		GFF1049	0.83	-0.7
1,056,549	-		GFF1049	0.83	+0.5
1,056,549	-		GFF1049	0.83	+0.8
1,056,549	-		GFF1049	0.83	+0.1
1,056,549	-		GFF1049	0.83	-1.8
1,056,549	-		GFF1049	0.83	-0.8
1,056,549	-		GFF1049	0.83	+0.4
1,056,549	-		GFF1049	0.83	-0.5
1,056,549	-		GFF1049	0.83	-0.2
1,056,549	-		GFF1049	0.83	-0.6
1,056,549	-		GFF1049	0.83	+0.0
1,056,549	-		GFF1049	0.83	-0.9
1,056,549	-		GFF1049	0.83	-1.1
1,056,578	+		GFF1049	0.88	-1.3
1,056,583	+		GFF1049	0.89	+0.5
1,056,583	+		GFF1049	0.89	-1.5
1,056,586	-		GFF1049	0.89	+0.9
1,056,591	-				+0.1
1,056,601	+				+0.1
1,056,601	+				+0.2
1,056,601	+				+0.6
1,056,601	+				+1.7
1,056,601	+				-0.1
1,056,609	-				+0.1
1,056,609	-				+1.5
1,056,610	-				+0.3
1,056,620	-				-0.8
1,056,625	+				-0.1
1,056,628	-				-0.6
1,056,632	+				-0.2
1,056,633	-				+0.4
1,056,638	+				-0.2
1,056,640	-				+0.7
1,056,640	-				-0.7
1,056,642	+				-1.3
1,056,646	-				-0.5
1,056,646	-				+0.5
1,056,646	-				-0.0
1,056,677	+				+0.1
1,056,685	+				-1.0
1,056,717	-				-0.3
1,056,719	+				-0.6
1,056,738	-		GFF1050	0.11	+1.5
1,056,749	+		GFF1050	0.12	-1.2
1,056,774	-		GFF1050	0.15	-1.2
1,056,778	+		GFF1050	0.15	-0.3
1,056,778	+		GFF1050	0.15	+0.0
1,056,780	+		GFF1050	0.16	+0.5
1,056,786	-		GFF1050	0.16	-0.2
1,056,786	-		GFF1050	0.16	+0.0
1,056,786	-		GFF1050	0.16	+0.2
1,056,810	-		GFF1050	0.19	+0.8
1,056,828	+		GFF1050	0.21	-1.2
1,056,833	+		GFF1050	0.22	-0.6
1,056,833	+		GFF1050	0.22	-1.6
1,056,833	+		GFF1050	0.22	+0.1
1,056,833	+		GFF1050	0.22	-1.4
1,056,833	+		GFF1050	0.22	-2.8
1,056,833	+		GFF1050	0.22	-2.8
1,056,833	+		GFF1050	0.22	-0.2
1,056,833	+		GFF1050	0.22	+0.6
1,056,833	+		GFF1050	0.22	-0.2
1,056,833	+		GFF1050	0.22	-0.5
1,056,833	+		GFF1050	0.22	-1.3
1,056,833	+		GFF1050	0.22	+0.1
1,056,833	+		GFF1050	0.22	-0.6
1,056,833	+		GFF1050	0.22	+1.0