Strain Fitness in Sphingobium sp. HT1-2 around GFF1036

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,035,810	+				-0.8
1,035,811	+				+0.2
1,035,811	+				-1.0
1,035,816	+				+0.7
1,035,816	+				-1.6
1,035,816	+				-0.9
1,035,821	+				-0.3
1,035,824	-				-2.1
1,035,824	-				+1.3
1,035,824	-				-0.8
1,035,824	-				-0.3
1,035,831	-				-0.6
1,035,877	-				-0.3
1,035,950	+				+0.1
1,035,950	+				+0.8
1,035,950	+				+0.7
1,035,958	-				-1.1
1,035,958	-				+0.0
1,035,958	-				-1.3
1,035,958	-				-1.0
1,035,958	-				+1.4
1,035,993	+		GFF1034	0.14	-1.3
1,036,015	+		GFF1034	0.19	+1.4
1,036,015	+		GFF1034	0.19	-2.7
1,036,015	+		GFF1034	0.19	-1.6
1,036,015	+		GFF1034	0.19	+0.5
1,036,015	+		GFF1034	0.19	+0.4
1,036,015	+		GFF1034	0.19	+0.2
1,036,015	-		GFF1034	0.19	+0.2
1,036,023	-		GFF1034	0.21	-0.3
1,036,023	-		GFF1034	0.21	-0.5
1,036,023	-		GFF1034	0.21	-0.7
1,036,023	-		GFF1034	0.21	+0.9
1,036,023	-		GFF1034	0.21	+0.8
1,036,023	-		GFF1034	0.21	-0.5
1,036,028	-		GFF1034	0.22	+0.2
1,036,039	+		GFF1034	0.24	-1.1
1,036,047	-		GFF1034	0.26	+0.5
1,036,060	+		GFF1034	0.29	+0.4
1,036,089	-		GFF1034	0.35	-0.2
1,036,095	-		GFF1034	0.37	-2.8
1,036,099	-		GFF1034	0.38	+0.2
1,036,120	+		GFF1034	0.42	-0.5
1,036,132	+		GFF1034	0.45	+0.4
1,036,132	+		GFF1034	0.45	+0.5
1,036,136	+		GFF1034	0.46	+0.4
1,036,140	-		GFF1034	0.47	+0.9
1,036,142	+		GFF1034	0.47	-1.3
1,036,158	-		GFF1034	0.51	-2.0
1,036,168	+		GFF1034	0.53	-1.8
1,036,176	-		GFF1034	0.55	-1.2
1,036,176	-		GFF1034	0.55	-1.2
1,036,185	-		GFF1034	0.57	+0.1
1,036,189	+		GFF1034	0.58	-0.5
1,036,190	-		GFF1034	0.58	-0.4
1,036,194	+		GFF1034	0.59	+1.4
1,036,195	-		GFF1034	0.59	-0.4
1,036,195	-		GFF1034	0.59	+0.4
1,036,197	-		GFF1034	0.59	+0.0
1,036,201	+		GFF1034	0.60	+1.2
1,036,211	+		GFF1034	0.62	-1.5
1,036,234	-		GFF1034	0.68	-0.5
1,036,234	-		GFF1034	0.68	-0.2
1,036,236	-		GFF1034	0.68	+2.0
1,036,246	+		GFF1034	0.70	-0.5
1,036,254	-		GFF1034	0.72	-0.5
1,036,270	+		GFF1034	0.76	+0.0
1,036,278	-		GFF1034	0.77	+1.7
1,036,295	+		GFF1034	0.81	-1.0
1,036,303	-		GFF1034	0.83	+0.4
1,036,315	+		GFF1034	0.86	+1.2
1,036,323	-		GFF1034	0.87	+0.3
1,036,323	-		GFF1034	0.87	+1.5
1,036,323	-		GFF1034	0.87	+0.7
1,036,323	-		GFF1034	0.87	+0.5
1,036,323	-		GFF1034	0.87	+1.0
1,036,323	-		GFF1034	0.87	+0.3
1,036,323	-		GFF1034	0.87	+1.2
1,036,372	-				-2.1
1,036,455	+				-0.1
1,036,468	-				-2.3
1,036,501	-				-0.5
1,036,508	+				-1.0
1,036,515	+		GFF1035	0.10	-1.5
1,036,523	-		GFF1035	0.13	+0.6
1,036,523	-		GFF1035	0.13	-1.1
1,036,529	+		GFF1035	0.15	-0.3
1,036,539	+		GFF1035	0.18	+1.0
1,036,542	-		GFF1035	0.19	-0.3
1,036,557	-		GFF1035	0.24	+0.0
1,036,572	+		GFF1035	0.29	+0.7
1,036,576	+		GFF1035	0.30	-0.2
1,036,577	+		GFF1035	0.31	-0.1
1,036,585	-		GFF1035	0.33	+0.1
1,036,585	-		GFF1035	0.33	-0.5
1,036,591	+		GFF1035	0.35	+0.2
1,036,599	-		GFF1035	0.38	+0.2
1,036,661	-		GFF1035	0.58	-2.1
1,036,704	+		GFF1035	0.73	+0.4
1,036,704	+		GFF1035	0.73	-0.5
1,036,712	-		GFF1035	0.75	+0.0
1,036,722	+		GFF1035	0.79	+0.4
1,036,735	+		GFF1035	0.83	-1.5
1,036,739	-		GFF1035	0.84	-0.3
1,036,744	-		GFF1035	0.86	+0.3
1,036,745	+		GFF1035	0.86	-1.8
1,036,753	-		GFF1035	0.89	-1.3
1,036,754	-		GFF1035	0.89	+0.9
1,036,754	-		GFF1035	0.89	-0.6
1,036,758	+				+0.9
1,036,760	+				-0.0
1,036,767	+				-2.5
1,036,768	-				-1.1
1,036,802	+				+1.0
1,036,837	-				+0.5
1,036,857	+				+1.1
1,036,865	-				-0.3
1,036,892	+				+1.4
1,036,897	+				+0.4
1,036,900	-				-0.3
1,036,900	-				+0.3
1,036,900	-				-0.3
1,036,905	+				-1.5
1,036,905	-				+0.5
1,036,910	+				-1.5
1,036,918	-				+0.8
1,036,918	-				+0.1
1,036,947	-				-0.4
1,036,967	+				+1.1
1,036,975	-				-0.1
1,036,977	+				-0.3
1,036,977	+				-0.3
1,036,982	+				+0.3
1,036,985	-				-0.6
1,036,990	-				-1.9
1,036,991	+				-0.1
1,036,995	-				-1.5
1,037,027	+				+0.2
1,037,030	-				+1.0
1,037,035	-				-0.5
1,037,035	-				-1.5
1,037,037	+				+0.2
1,037,037	+				+0.7
1,037,045	-				+0.7
1,037,045	-				-0.3
1,037,048	+				+0.1
1,037,056	-				-0.1
1,037,082	-				+0.9
1,037,082	-				-0.2
1,037,092	-				-1.9
1,037,099	+		GFF1036	0.10	+0.4
1,037,110	+		GFF1036	0.10	+1.0
1,037,111	+		GFF1036	0.10	-1.2
1,037,119	-		GFF1036	0.11	-0.0
1,037,119	-		GFF1036	0.11	+0.9
1,037,130	+		GFF1036	0.11	-0.1
1,037,164	-		GFF1036	0.12	-1.5
1,037,182	+		GFF1036	0.13	-0.2
1,037,190	-		GFF1036	0.13	-1.3
1,037,191	-		GFF1036	0.13	-0.3
1,037,195	+		GFF1036	0.13	+0.4
1,037,195	+		GFF1036	0.13	-2.4
1,037,195	-		GFF1036	0.13	-1.5
1,037,203	-		GFF1036	0.14	+0.2
1,037,203	-		GFF1036	0.14	+1.2
1,037,203	-		GFF1036	0.14	+0.3
1,037,223	-		GFF1036	0.14	+1.0
1,037,255	+		GFF1036	0.15	+0.0
1,037,262	+		GFF1036	0.16	+0.4
1,037,263	-		GFF1036	0.16	+0.4
1,037,263	-		GFF1036	0.16	+0.3
1,037,263	-		GFF1036	0.16	+0.1
1,037,263	-		GFF1036	0.16	-1.8
1,037,277	+		GFF1036	0.16	+0.4
1,037,277	+		GFF1036	0.16	+1.3
1,037,277	+		GFF1036	0.16	+0.8
1,037,277	+		GFF1036	0.16	-0.0
1,037,277	+		GFF1036	0.16	-2.1
1,037,285	-		GFF1036	0.16	-0.3
1,037,285	-		GFF1036	0.16	-0.3
1,037,285	-		GFF1036	0.16	-1.6
1,037,289	+		GFF1036	0.17	-0.3
1,037,290	+		GFF1036	0.17	-0.9
1,037,290	+		GFF1036	0.17	+1.0
1,037,295	+		GFF1036	0.17	-0.4
1,037,297	-		GFF1036	0.17	-1.0
1,037,297	-		GFF1036	0.17	-1.8
1,037,297	-		GFF1036	0.17	-1.1
1,037,297	-		GFF1036	0.17	-1.2
1,037,298	-		GFF1036	0.17	-1.1
1,037,308	+		GFF1036	0.17	+0.7
1,037,308	+		GFF1036	0.17	+0.5
1,037,308	+		GFF1036	0.17	-0.9
1,037,308	+		GFF1036	0.17	-0.2
1,037,328	+		GFF1036	0.18	-1.9
1,037,329	+		GFF1036	0.18	+0.5
1,037,329	+		GFF1036	0.18	+1.2
1,037,329	+		GFF1036	0.18	-1.3
1,037,335	-		GFF1036	0.18	+1.2
1,037,337	-		GFF1036	0.18	+0.7
1,037,342	-		GFF1036	0.18	-0.6
1,037,351	+		GFF1036	0.19	-0.4
1,037,351	+		GFF1036	0.19	+1.5
1,037,359	-		GFF1036	0.19	-1.7
1,037,386	-		GFF1036	0.20	+0.7
1,037,391	+		GFF1036	0.20	-0.0
1,037,391	+		GFF1036	0.20	-0.1
1,037,399	-		GFF1036	0.20	-0.2
1,037,426	-		GFF1036	0.21	-0.5
1,037,450	+		GFF1036	0.22	-0.2
1,037,450	+		GFF1036	0.22	+1.1
1,037,450	+		GFF1036	0.22	+1.4
1,037,458	-		GFF1036	0.22	-1.1
1,037,458	-		GFF1036	0.22	-1.5
1,037,458	-		GFF1036	0.22	-0.2
1,037,468	-		GFF1036	0.23	-1.5
1,037,518	+		GFF1036	0.25	-1.4
1,037,542	+		GFF1036	0.25	+0.3
1,037,561	+		GFF1036	0.26	+0.5
1,037,569	+		GFF1036	0.26	-1.2
1,037,577	-		GFF1036	0.27	-1.5
1,037,578	+		GFF1036	0.27	-0.3
1,037,585	-		GFF1036	0.27	+0.2
1,037,586	-		GFF1036	0.27	-0.8
1,037,593	-		GFF1036	0.27	+0.6
1,037,599	+		GFF1036	0.27	+0.0
1,037,607	-		GFF1036	0.28	-2.0
1,037,607	-		GFF1036	0.28	-0.2
1,037,622	+		GFF1036	0.28	-0.7
1,037,630	-		GFF1036	0.28	-0.3
1,037,630	-		GFF1036	0.28	+0.8
1,037,649	-		GFF1036	0.29	+0.1
1,037,656	+		GFF1036	0.29	+0.1
1,037,662	+		GFF1036	0.30	+1.5
1,037,663	+		GFF1036	0.30	-0.8
1,037,669	-		GFF1036	0.30	-2.8
1,037,671	-		GFF1036	0.30	-0.3
1,037,674	+		GFF1036	0.30	+1.1
1,037,674	+		GFF1036	0.30	+0.4
1,037,674	+		GFF1036	0.30	-0.1
1,037,677	-		GFF1036	0.30	-0.3
1,037,680	+		GFF1036	0.30	-0.6
1,037,682	-		GFF1036	0.30	+0.5
1,037,682	-		GFF1036	0.30	-2.4
1,037,682	-		GFF1036	0.30	-1.7
1,037,682	-		GFF1036	0.30	-0.3
1,037,682	-		GFF1036	0.30	+0.2
1,037,689	-		GFF1036	0.30	-2.1
1,037,689	-		GFF1036	0.30	-0.6
1,037,699	+		GFF1036	0.31	+1.2
1,037,709	+		GFF1036	0.31	+0.4
1,037,717	+		GFF1036	0.31	-0.2
1,037,717	+		GFF1036	0.31	-1.9
1,037,724	-		GFF1036	0.32	-0.0
1,037,725	-		GFF1036	0.32	+0.8
1,037,725	-		GFF1036	0.32	-0.3
1,037,731	-		GFF1036	0.32	+0.2
1,037,744	+		GFF1036	0.32	+0.4
1,037,744	+		GFF1036	0.32	+1.1
1,037,754	+		GFF1036	0.33	-2.3
1,037,754	+		GFF1036	0.33	+1.6
1,037,754	+		GFF1036	0.33	+0.1
1,037,762	-		GFF1036	0.33	-1.1
1,037,762	-		GFF1036	0.33	-1.3
1,037,762	-		GFF1036	0.33	+0.9
1,037,762	-		GFF1036	0.33	+0.6
1,037,762	-		GFF1036	0.33	-0.3
1,037,775	+		GFF1036	0.33	-1.6
1,037,785	-		GFF1036	0.34	+0.2
1,037,789	-		GFF1036	0.34	-1.1
1,037,818	-		GFF1036	0.35	-2.7
1,037,823	+		GFF1036	0.35	+0.2
1,037,831	-		GFF1036	0.35	-1.5
1,037,836	+		GFF1036	0.36	-0.2
1,037,849	-		GFF1036	0.36	+0.9
1,037,852	+		GFF1036	0.36	-0.4
1,037,856	+		GFF1036	0.36	-1.0
1,037,872	+		GFF1036	0.37	-0.3
1,037,880	-		GFF1036	0.37	-0.2
1,037,885	-		GFF1036	0.37	-0.5
1,037,885	-		GFF1036	0.37	-1.5
1,037,885	-		GFF1036	0.37	+0.3
1,037,892	-		GFF1036	0.37	+0.5
1,037,914	-		GFF1036	0.38	+0.7
1,037,917	+		GFF1036	0.38	-1.5
1,037,925	-		GFF1036	0.39	-1.5
1,037,925	-		GFF1036	0.39	+0.6
1,037,932	+		GFF1036	0.39	+0.1
1,037,940	-		GFF1036	0.39	+0.3
1,037,953	+		GFF1036	0.40	-0.5
1,037,963	+		GFF1036	0.40	+1.4
1,037,963	+		GFF1036	0.40	+0.2
1,037,965	+		GFF1036	0.40	-0.6
1,037,973	+		GFF1036	0.40	-1.0
1,037,973	+		GFF1036	0.40	-0.3
1,037,975	+		GFF1036	0.40	-0.8
1,037,975	+		GFF1036	0.40	+0.0
1,037,980	+		GFF1036	0.41	-0.2
1,037,980	+		GFF1036	0.41	+0.7
1,037,981	-		GFF1036	0.41	+0.3
1,037,981	-		GFF1036	0.41	+0.7
1,037,981	-		GFF1036	0.41	-0.1
1,037,986	-		GFF1036	0.41	-1.3
1,037,988	+		GFF1036	0.41	+0.2
1,037,988	-		GFF1036	0.41	-1.0
1,037,991	-		GFF1036	0.41	-0.0
1,038,009	-		GFF1036	0.42	+0.1
1,038,028	-		GFF1036	0.42	-1.7
1,038,030	+		GFF1036	0.42	+0.2
1,038,030	+		GFF1036	0.42	-0.7
1,038,041	+		GFF1036	0.43	-0.2
1,038,041	+		GFF1036	0.43	-2.0
1,038,049	-		GFF1036	0.43	-1.5
1,038,049	-		GFF1036	0.43	+0.3
1,038,057	-		GFF1036	0.43	+0.4
1,038,060	+		GFF1036	0.43	-1.4
1,038,063	+		GFF1036	0.43	-0.4
1,038,071	-		GFF1036	0.44	+2.0
1,038,084	+		GFF1036	0.44	+1.0
1,038,092	-		GFF1036	0.44	-2.0
1,038,095	+		GFF1036	0.45	+1.1
1,038,103	-		GFF1036	0.45	+0.3
1,038,103	-		GFF1036	0.45	+0.2
1,038,138	-		GFF1036	0.46	-0.8
1,038,167	+		GFF1036	0.47	-0.3
1,038,188	+		GFF1036	0.48	-2.1
1,038,201	+		GFF1036	0.48	+0.5
1,038,206	+		GFF1036	0.48	+0.2
1,038,208	+		GFF1036	0.48	-0.2
1,038,208	+		GFF1036	0.48	-0.1
1,038,258	-		GFF1036	0.50	+0.7
1,038,258	-		GFF1036	0.50	-0.3
1,038,258	-		GFF1036	0.50	+0.1
1,038,263	+		GFF1036	0.50	+0.4
1,038,280	+		GFF1036	0.51	-0.0
1,038,288	-		GFF1036	0.51	-0.6
1,038,299	+		GFF1036	0.52	+0.5
1,038,331	+		GFF1036	0.53	-0.0
1,038,367	-		GFF1036	0.54	-0.2
1,038,377	-		GFF1036	0.54	+0.9
1,038,408	+		GFF1036	0.55	-1.2
1,038,416	-		GFF1036	0.56	-0.4
1,038,417	+		GFF1036	0.56	+1.4
1,038,422	+		GFF1036	0.56	-0.6
1,038,425	-		GFF1036	0.56	+0.7
1,038,430	-		GFF1036	0.56	+0.4
1,038,444	+		GFF1036	0.57	-0.1
1,038,444	+		GFF1036	0.57	+0.3
1,038,444	+		GFF1036	0.57	+0.7
1,038,446	-		GFF1036	0.57	-0.5
1,038,452	-		GFF1036	0.57	-0.0
1,038,453	-		GFF1036	0.57	+0.7
1,038,474	-		GFF1036	0.58	+0.4
1,038,497	+		GFF1036	0.58	+0.2
1,038,502	+		GFF1036	0.59	-0.5
1,038,505	+		GFF1036	0.59	+1.2
1,038,518	-		GFF1036	0.59	+0.2
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