Strain Fitness in Sphingobium sp. HT1-2 around GFF1031

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,031,742	+		GFF1030	0.32	-0.7
1,031,750	-		GFF1030	0.33	-0.4
1,031,760	-		GFF1030	0.33	-2.0
1,031,769	+		GFF1030	0.34	-0.8
1,031,777	-		GFF1030	0.35	-0.1
1,031,777	-		GFF1030	0.35	-0.8
1,031,777	-		GFF1030	0.35	+0.1
1,031,782	+		GFF1030	0.35	-0.2
1,031,796	-		GFF1030	0.36	-0.4
1,031,804	+		GFF1030	0.36	+0.8
1,031,809	+		GFF1030	0.37	+1.3
1,031,809	+		GFF1030	0.37	-0.6
1,031,809	+		GFF1030	0.37	-0.8
1,031,809	+		GFF1030	0.37	-1.7
1,031,812	-		GFF1030	0.37	+0.5
1,031,815	+		GFF1030	0.37	+1.4
1,031,817	-		GFF1030	0.37	+0.8
1,031,819	+		GFF1030	0.37	-1.5
1,031,867	+		GFF1030	0.41	+0.4
1,031,867	+		GFF1030	0.41	-0.3
1,031,875	-		GFF1030	0.41	-0.4
1,031,877	+		GFF1030	0.41	+0.0
1,031,887	-		GFF1030	0.42	-0.8
1,031,888	-		GFF1030	0.42	-1.5
1,031,896	+		GFF1030	0.43	-0.5
1,031,917	+		GFF1030	0.44	-0.6
1,031,917	+		GFF1030	0.44	+1.0
1,031,922	+		GFF1030	0.45	-0.0
1,031,925	-		GFF1030	0.45	-0.1
1,031,925	-		GFF1030	0.45	+0.4
1,031,927	+		GFF1030	0.45	+0.1
1,031,935	-		GFF1030	0.45	-1.1
1,031,935	-		GFF1030	0.45	+0.3
1,031,935	-		GFF1030	0.45	-2.6
1,031,935	-		GFF1030	0.45	-2.1
1,031,935	-		GFF1030	0.45	+0.1
1,031,935	-		GFF1030	0.45	+1.2
1,031,935	-		GFF1030	0.45	+0.7
1,031,935	-		GFF1030	0.45	-0.4
1,031,937	+		GFF1030	0.46	+1.1
1,031,940	-		GFF1030	0.46	+1.1
1,031,940	-		GFF1030	0.46	+0.9
1,031,951	-		GFF1030	0.47	-1.0
1,031,961	+		GFF1030	0.47	+0.2
1,031,961	+		GFF1030	0.47	+1.1
1,031,961	+		GFF1030	0.47	+0.8
1,031,968	+		GFF1030	0.48	-0.8
1,031,969	-		GFF1030	0.48	+0.4
1,031,971	+		GFF1030	0.48	-0.6
1,031,971	-		GFF1030	0.48	+0.4
1,031,983	+		GFF1030	0.49	-1.4
1,031,983	+		GFF1030	0.49	-0.8
1,031,983	+		GFF1030	0.49	-0.6
1,031,983	+		GFF1030	0.49	+0.2
1,031,983	+		GFF1030	0.49	-0.2
1,031,991	-		GFF1030	0.49	+1.6
1,031,991	-		GFF1030	0.49	-1.5
1,031,991	-		GFF1030	0.49	+0.4
1,031,991	-		GFF1030	0.49	-1.3
1,031,991	-		GFF1030	0.49	-0.5
1,031,991	-		GFF1030	0.49	-0.2
1,031,991	-		GFF1030	0.49	+0.9
1,031,991	-		GFF1030	0.49	-1.0
1,031,999	+		GFF1030	0.50	-0.9
1,032,004	+		GFF1030	0.50	-0.2
1,032,004	+		GFF1030	0.50	+0.2
1,032,004	+		GFF1030	0.50	+0.1
1,032,004	+		GFF1030	0.50	-0.5
1,032,006	+		GFF1030	0.50	-1.6
1,032,012	-		GFF1030	0.51	-0.1
1,032,012	-		GFF1030	0.51	-0.0
1,032,012	-		GFF1030	0.51	-0.2
1,032,012	-		GFF1030	0.51	+0.1
1,032,012	-		GFF1030	0.51	+1.6
1,032,022	+		GFF1030	0.51	-1.2
1,032,041	-		GFF1030	0.53	+0.2
1,032,042	+		GFF1030	0.53	-0.8
1,032,042	+		GFF1030	0.53	-0.8
1,032,052	+		GFF1030	0.54	+0.4
1,032,064	+		GFF1030	0.54	+0.2
1,032,072	-		GFF1030	0.55	-0.3
1,032,087	+		GFF1030	0.56	+0.1
1,032,087	+		GFF1030	0.56	-0.6
1,032,087	+		GFF1030	0.56	+0.3
1,032,087	+		GFF1030	0.56	+0.6
1,032,087	+		GFF1030	0.56	-1.8
1,032,087	+		GFF1030	0.56	+0.1
1,032,087	+		GFF1030	0.56	+0.3
1,032,087	+		GFF1030	0.56	+1.4
1,032,087	+		GFF1030	0.56	-2.5
1,032,087	+		GFF1030	0.56	+0.1
1,032,095	-		GFF1030	0.57	-1.1
1,032,095	-		GFF1030	0.57	+0.0
1,032,095	-		GFF1030	0.57	+0.3
1,032,095	-		GFF1030	0.57	-0.9
1,032,095	-		GFF1030	0.57	-0.2
1,032,095	-		GFF1030	0.57	+1.1
1,032,095	-		GFF1030	0.57	-0.6
1,032,095	-		GFF1030	0.57	+0.2
1,032,095	-		GFF1030	0.57	-1.3
1,032,095	-		GFF1030	0.57	+0.7
1,032,103	+		GFF1030	0.57	+1.0
1,032,103	+		GFF1030	0.57	-2.0
1,032,110	+		GFF1030	0.58	+0.7
1,032,110	+		GFF1030	0.58	+1.3
1,032,111	-		GFF1030	0.58	-1.6
1,032,111	-		GFF1030	0.58	-0.6
1,032,127	+		GFF1030	0.59	-1.6
1,032,171	+		GFF1030	0.62	-1.6
1,032,171	+		GFF1030	0.62	+1.0
1,032,171	+		GFF1030	0.62	+0.0
1,032,171	+		GFF1030	0.62	-0.3
1,032,176	+		GFF1030	0.62	-1.3
1,032,176	+		GFF1030	0.62	+0.7
1,032,178	+		GFF1030	0.62	-0.3
1,032,179	-		GFF1030	0.62	-0.8
1,032,179	-		GFF1030	0.62	-0.3
1,032,179	-		GFF1030	0.62	-2.3
1,032,179	-		GFF1030	0.62	+0.8
1,032,179	-		GFF1030	0.62	+0.5
1,032,179	-		GFF1030	0.62	+0.2
1,032,179	-		GFF1030	0.62	-1.1
1,032,182	+		GFF1030	0.63	-1.5
1,032,183	+		GFF1030	0.63	-0.3
1,032,183	+		GFF1030	0.63	+0.3
1,032,184	-		GFF1030	0.63	-0.1
1,032,184	-		GFF1030	0.63	+0.6
1,032,184	-		GFF1030	0.63	+0.2
1,032,184	-		GFF1030	0.63	+1.8
1,032,188	+		GFF1030	0.63	-1.6
1,032,188	+		GFF1030	0.63	+1.6
1,032,189	+		GFF1030	0.63	+0.9
1,032,196	-		GFF1030	0.64	+0.1
1,032,196	-		GFF1030	0.64	+0.4
1,032,196	-		GFF1030	0.64	-0.8
1,032,196	-		GFF1030	0.64	-0.3
1,032,197	-		GFF1030	0.64	-0.2
1,032,215	+		GFF1030	0.65	-1.1
1,032,228	-		GFF1030	0.66	+0.4
1,032,228	-		GFF1030	0.66	-1.4
1,032,246	+		GFF1030	0.67	-2.1
1,032,254	-		GFF1030	0.68	+0.9
1,032,261	-		GFF1030	0.68	-0.8
1,032,291	+		GFF1030	0.70	-0.8
1,032,300	-		GFF1030	0.71	-0.5
1,032,306	+		GFF1030	0.71	-0.3
1,032,336	-		GFF1030	0.73	-0.2
1,032,361	-		GFF1030	0.75	+0.1
1,032,366	-		GFF1030	0.75	-0.1
1,032,367	-		GFF1030	0.75	-1.2
1,032,372	-		GFF1030	0.76	+0.5
1,032,405	+		GFF1030	0.78	+1.4
1,032,413	-		GFF1030	0.79	-0.5
1,032,413	-		GFF1030	0.79	-0.2
1,032,413	-		GFF1030	0.79	+0.2
1,032,429	+		GFF1030	0.80	-0.3
1,032,437	+		GFF1030	0.80	-1.0
1,032,445	-		GFF1030	0.81	+0.5
1,032,481	+		GFF1030	0.83	+0.5
1,032,481	+		GFF1030	0.83	+0.8
1,032,489	-		GFF1030	0.84	-1.6
1,032,489	-		GFF1030	0.84	-1.6
1,032,489	-		GFF1030	0.84	-1.0
1,032,499	+		GFF1030	0.85	-0.8
1,032,533	+		GFF1030	0.87	+0.1
1,032,541	-		GFF1030	0.87	-0.6
1,032,552	+		GFF1030	0.88	-0.8
1,032,556	-		GFF1030	0.88	+1.1
1,032,562	+		GFF1030	0.89	+0.1
1,032,562	+		GFF1030	0.89	-0.8
1,032,562	+		GFF1030	0.89	+0.8
1,032,570	-		GFF1030	0.89	+1.1
1,032,570	-		GFF1030	0.89	-0.3
1,032,570	-		GFF1030	0.89	-0.2
1,032,572	+		GFF1030	0.90	+0.4
1,032,572	+		GFF1030	0.90	-0.3
1,032,572	+		GFF1030	0.90	-0.2
1,032,579	+				-0.6
1,032,580	-				-1.2
1,032,580	-				-1.6
1,032,580	-				-1.5
1,032,589	+				+0.3
1,032,595	+				+1.2
1,032,608	-				-0.9
1,032,645	+				-0.5
1,032,648	+				-1.2
1,032,700	-				-2.3
1,032,703	+				+0.5
1,032,703	+				+0.6
1,032,710	+				-0.1
1,032,710	+				+1.2
1,032,710	+				+0.9
1,032,711	+				+0.5
1,032,711	+				-0.1
1,032,711	+				+0.1
1,032,718	-				-0.9
1,032,719	-				-0.3
1,032,730	-				-0.1
1,032,766	-				+0.1
1,032,812	-		GFF1031	0.11	+1.4
1,032,843	-		GFF1031	0.14	-0.3
1,032,843	-		GFF1031	0.14	+1.4
1,032,845	+		GFF1031	0.15	-1.2
1,032,845	+		GFF1031	0.15	+0.7
1,032,845	+		GFF1031	0.15	-0.7
1,032,845	+		GFF1031	0.15	-0.5
1,032,845	+		GFF1031	0.15	+1.1
1,032,853	-		GFF1031	0.15	-2.4
1,032,853	-		GFF1031	0.15	+0.7
1,032,853	-		GFF1031	0.15	-1.9
1,032,853	-		GFF1031	0.15	-0.9
1,032,853	-		GFF1031	0.15	-1.8
1,032,853	-		GFF1031	0.15	+0.4
1,032,853	-		GFF1031	0.15	-0.2
1,032,853	-		GFF1031	0.15	+0.8
1,032,853	-		GFF1031	0.15	-2.1
1,032,853	-		GFF1031	0.15	-0.2
1,032,865	-		GFF1031	0.17	-2.1
1,032,871	+		GFF1031	0.17	-1.3
1,032,872	+		GFF1031	0.17	-0.9
1,032,877	+		GFF1031	0.18	-0.2
1,032,877	+		GFF1031	0.18	-0.3
1,032,882	+		GFF1031	0.19	-0.7
1,032,883	+		GFF1031	0.19	-0.6
1,032,885	-		GFF1031	0.19	+0.8
1,032,885	-		GFF1031	0.19	-1.6
1,032,890	-		GFF1031	0.19	-2.3
1,032,936	+		GFF1031	0.25	+0.7
1,032,937	+		GFF1031	0.25	-0.8
1,032,943	+		GFF1031	0.25	-1.7
1,032,944	-		GFF1031	0.25	-1.7
1,032,944	-		GFF1031	0.25	+1.6
1,032,944	-		GFF1031	0.25	-1.3
1,032,944	-		GFF1031	0.25	+1.2
1,032,971	-		GFF1031	0.28	-1.6
1,032,976	-		GFF1031	0.29	-0.1
1,032,977	+		GFF1031	0.29	-0.3
1,033,008	-		GFF1031	0.33	+1.3
1,033,013	-		GFF1031	0.33	+0.4
1,033,013	-		GFF1031	0.33	+0.8
1,033,013	-		GFF1031	0.33	+0.2
1,033,013	-		GFF1031	0.33	-1.8
1,033,016	+		GFF1031	0.33	-0.1
1,033,030	+		GFF1031	0.35	-0.5
1,033,037	+		GFF1031	0.36	+1.4
1,033,049	+		GFF1031	0.37	-0.3
1,033,067	+		GFF1031	0.39	+0.8
1,033,094	+		GFF1031	0.42	+0.1
1,033,114	-		GFF1031	0.44	-0.2
1,033,114	-		GFF1031	0.44	+0.6
1,033,120	-		GFF1031	0.45	-1.7
1,033,122	+		GFF1031	0.45	+0.3
1,033,132	+		GFF1031	0.46	-0.4
1,033,140	-		GFF1031	0.47	-1.7
1,033,144	+		GFF1031	0.48	-0.4
1,033,144	+		GFF1031	0.48	+0.1
1,033,159	+		GFF1031	0.49	-1.0
1,033,167	+		GFF1031	0.50	-0.6
1,033,167	+		GFF1031	0.50	+0.3
1,033,167	+		GFF1031	0.50	-0.4
1,033,167	+		GFF1031	0.50	-0.7
1,033,175	-		GFF1031	0.51	-0.4
1,033,192	+		GFF1031	0.53	-1.7
1,033,213	+		GFF1031	0.55	-0.0
1,033,228	-		GFF1031	0.57	+0.4
1,033,237	+		GFF1031	0.58	+0.5
1,033,252	-		GFF1031	0.60	+0.3
1,033,267	+		GFF1031	0.61	-0.3
1,033,270	-		GFF1031	0.62	+0.4
1,033,275	-		GFF1031	0.62	+0.9
1,033,300	+		GFF1031	0.65	-0.7
1,033,310	+		GFF1031	0.66	+0.0
1,033,310	+		GFF1031	0.66	-0.9
1,033,312	-		GFF1031	0.66	-0.1
1,033,315	+		GFF1031	0.67	-1.2
1,033,320	+		GFF1031	0.67	-0.9
1,033,360	-		GFF1031	0.72	+1.3
1,033,413	-		GFF1031	0.77	+0.4
1,033,413	-		GFF1031	0.77	-0.6
1,033,420	+		GFF1031	0.78	+0.4
1,033,503	+		GFF1031	0.87	-1.7
1,033,504	+		GFF1031	0.87	+0.2
1,033,505	+		GFF1031	0.88	-1.8
1,033,511	-		GFF1031	0.88	-1.8
1,033,511	-		GFF1031	0.88	-1.3
1,033,533	+				-1.2
1,033,575	+				-0.3
1,033,611	-				-0.4
1,033,641	+		GFF1032	0.13	-1.7
1,033,641	+		GFF1032	0.13	-2.7
1,033,651	+		GFF1032	0.18	+0.1
1,033,654	+		GFF1032	0.19	+0.9
1,033,654	-		GFF1032	0.19	+0.2
1,033,654	-		GFF1032	0.19	+0.1
1,033,660	-		GFF1032	0.22	+0.0
1,033,661	-		GFF1032	0.22	-0.6
1,033,665	+		GFF1032	0.24	+0.5
1,033,671	+		GFF1032	0.27	+0.2
1,033,675	+		GFF1032	0.29	-1.8
1,033,675	+		GFF1032	0.29	-1.4
1,033,675	+		GFF1032	0.29	-0.9
1,033,675	+		GFF1032	0.29	-1.3
1,033,675	+		GFF1032	0.29	+1.5
1,033,675	+		GFF1032	0.29	-0.5
1,033,675	+		GFF1032	0.29	-0.1
1,033,675	+		GFF1032	0.29	+0.4
1,033,679	-		GFF1032	0.31	-1.2
1,033,681	+		GFF1032	0.31	+0.7
1,033,683	-		GFF1032	0.32	+0.8
1,033,690	+		GFF1032	0.36	-0.1
1,033,715	-		GFF1032	0.47	+1.0
1,033,744	+		GFF1032	0.61	-0.7
1,033,744	+		GFF1032	0.61	-0.7
1,033,744	+		GFF1032	0.61	-0.8
1,033,752	+		GFF1032	0.64	-0.2
1,033,752	+		GFF1032	0.64	-1.0
1,033,752	+		GFF1032	0.64	+0.2
1,033,760	-		GFF1032	0.68	-0.9
1,033,786	-		GFF1032	0.80	-0.2
1,033,791	-		GFF1032	0.82	-1.9
1,033,791	-		GFF1032	0.82	-1.9
1,033,799	-		GFF1032	0.86	-0.3
1,033,799	-		GFF1032	0.86	+0.4
1,033,836	-				+0.5
1,033,840	+				-1.2
1,033,857	+				+0.9
1,033,858	+				-0.6
1,033,859	-				-0.2
1,033,859	-				+0.1
1,033,861	-				-0.5
1,033,861	-				-0.1
1,033,910	+				-1.2
1,033,910	+				-0.9
1,033,918	-				-0.6
1,033,918	-				-0.8
1,033,958	-				-1.5
1,033,992	-				-0.1
1,033,999	-				+0.4
1,034,001	+				-1.6
1,034,009	-				-0.6
1,034,009	-				+0.2
1,034,062	+		GFF1033	0.11	-1.9
1,034,070	-		GFF1033	0.12	-0.8
1,034,070	-		GFF1033	0.12	+0.4
1,034,074	+		GFF1033	0.12	+0.1
1,034,075	-		GFF1033	0.12	+0.4
1,034,082	-		GFF1033	0.12	+0.2
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1,034,108	+		GFF1033	0.13	+1.4
1,034,134	+		GFF1033	0.15	-2.1
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1,034,149	-		GFF1033	0.15	-1.6
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1,034,168	-		GFF1033	0.16	-1.3
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1,034,168	-		GFF1033	0.16	-1.7
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1,034,278	-		GFF1033	0.21	-2.1
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1,034,400	+		GFF1033	0.27	-1.0
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1,034,442	-		GFF1033	0.29	-1.7
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1,034,462	-		GFF1033	0.30	-1.1
1,034,462	-		GFF1033	0.30	-1.7
1,034,462	-		GFF1033	0.30	-1.3
1,034,469	+		GFF1033	0.31	-2.5
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1,034,501	-		GFF1033	0.32	-1.9
1,034,503	-		GFF1033	0.32	-0.2
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1,034,599	+		GFF1033	0.37	-1.8
1,034,599	+		GFF1033	0.37	-1.0
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1,034,599	+		GFF1033	0.37	+0.3
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1,034,607	-		GFF1033	0.37	-0.7
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1,034,607	-		GFF1033	0.37	+0.8
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1,034,607	-		GFF1033	0.37	+0.3
1,034,607	-		GFF1033	0.37	+1.8