Strain Fitness in Sphingobium sp. HT1-2 around GFF948

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF946 and GFF947 overlap by 4 nucleotidesGFF947 and GFF948 are separated by 158 nucleotidesGFF948 and GFF949 overlap by 4 nucleotides GFF946 - Protein containing transglutaminase-like domain, putative cysteine protease, at 947,003 to 947,908 GFF946 GFF947 - hypothetical protein, at 947,905 to 948,084 GFF947 GFF948 - Cytochrome P450, at 948,243 to 949,610 GFF948 GFF949 - hypothetical protein, at 949,607 to 950,734 GFF949 Position (kb) 948 949 950Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 947.270 kb on - strand, within GFF946at 947.294 kb on - strand, within GFF946at 947.320 kb on + strand, within GFF946at 947.323 kb on - strand, within GFF946at 947.372 kb on - strand, within GFF946at 947.374 kb on - strand, within GFF946at 947.374 kb on - strand, within GFF946at 947.374 kb on - strand, within GFF946at 947.419 kb on + strand, within GFF946at 947.470 kb on + strand, within GFF946at 947.470 kb on + strand, within GFF946at 947.480 kb on + strand, within GFF946at 947.525 kb on + strand, within GFF946at 947.525 kb on + strand, within GFF946at 947.555 kb on + strand, within GFF946at 947.580 kb on - strand, within GFF946at 947.593 kb on - strand, within GFF946at 947.598 kb on - strand, within GFF946at 947.603 kb on - strand, within GFF946at 947.618 kb on - strand, within GFF946at 947.620 kb on - strand, within GFF946at 947.620 kb on - strand, within GFF946at 947.630 kb on - strand, within GFF946at 947.664 kb on - strand, within GFF946at 947.665 kb on + strand, within GFF946at 947.681 kb on + strand, within GFF946at 947.686 kb on + strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.689 kb on - strand, within GFF946at 947.691 kb on + strand, within GFF946at 947.694 kb on - strand, within GFF946at 947.699 kb on - strand, within GFF946at 947.704 kb on + strand, within GFF946at 947.730 kb on + strand, within GFF946at 947.730 kb on + strand, within GFF946at 947.749 kb on + strand, within GFF946at 947.750 kb on - strand, within GFF946at 947.776 kb on - strand, within GFF946at 947.794 kb on - strand, within GFF946at 947.835 kb on + strandat 947.835 kb on + strandat 947.840 kb on + strandat 947.840 kb on + strandat 947.840 kb on + strandat 947.848 kb on - strandat 947.848 kb on - strandat 947.853 kb on - strandat 947.869 kb on - strandat 947.959 kb on + strand, within GFF947at 947.959 kb on + strand, within GFF947at 947.960 kb on + strand, within GFF947at 947.960 kb on + strand, within GFF947at 947.960 kb on + strand, within GFF947at 947.968 kb on - strand, within GFF947at 947.968 kb on - strand, within GFF947at 947.968 kb on - strand, within GFF947at 947.968 kb on - strand, within GFF947at 947.968 kb on - strand, within GFF947at 947.987 kb on + strand, within GFF947at 947.995 kb on + strand, within GFF947at 948.003 kb on - strand, within GFF947at 948.048 kb on + strand, within GFF947at 948.056 kb on - strand, within GFF947at 948.066 kb on - strand, within GFF947at 948.129 kb on + strandat 948.148 kb on + strandat 948.148 kb on + strandat 948.158 kb on + strandat 948.173 kb on + strandat 948.175 kb on + strandat 948.181 kb on - strandat 948.190 kb on + strandat 948.219 kb on - strandat 948.274 kb on + strandat 948.285 kb on + strandat 948.304 kb on + strandat 948.305 kb on - strandat 948.430 kb on + strand, within GFF948at 948.438 kb on + strand, within GFF948at 948.484 kb on - strand, within GFF948at 948.509 kb on - strand, within GFF948at 948.513 kb on - strand, within GFF948at 948.524 kb on + strand, within GFF948at 948.524 kb on + strand, within GFF948at 948.532 kb on - strand, within GFF948at 948.532 kb on - strand, within GFF948at 948.537 kb on - strand, within GFF948at 948.674 kb on - strand, within GFF948at 948.698 kb on - strand, within GFF948at 948.720 kb on - strand, within GFF948at 948.725 kb on - strand, within GFF948at 948.733 kb on + strand, within GFF948at 948.746 kb on - strand, within GFF948at 948.746 kb on - strand, within GFF948at 948.771 kb on - strand, within GFF948at 948.782 kb on + strand, within GFF948at 948.823 kb on + strand, within GFF948at 948.823 kb on + strand, within GFF948at 948.823 kb on + strand, within GFF948at 948.860 kb on - strand, within GFF948at 948.998 kb on - strand, within GFF948at 948.998 kb on - strand, within GFF948at 949.033 kb on + strand, within GFF948at 949.102 kb on - strand, within GFF948at 949.102 kb on - strand, within GFF948at 949.107 kb on - strand, within GFF948at 949.109 kb on - strand, within GFF948at 949.136 kb on + strand, within GFF948at 949.164 kb on - strand, within GFF948at 949.264 kb on - strand, within GFF948at 949.299 kb on - strand, within GFF948at 949.305 kb on - strand, within GFF948at 949.361 kb on + strand, within GFF948at 949.369 kb on - strand, within GFF948at 949.396 kb on - strand, within GFF948at 949.455 kb on + strand, within GFF948at 949.481 kb on - strandat 949.500 kb on - strandat 949.500 kb on - strandat 949.527 kb on + strandat 949.530 kb on - strandat 949.546 kb on + strandat 949.549 kb on - strandat 949.569 kb on - strandat 949.575 kb on - strandat 949.582 kb on + strandat 949.582 kb on + strandat 949.582 kb on + strandat 949.582 kb on + strandat 949.590 kb on - strandat 949.590 kb on - strandat 949.590 kb on - strandat 949.590 kb on - strandat 949.590 kb on - strandat 949.590 kb on - strandat 949.590 kb on - strandat 949.590 kb on - strandat 949.590 kb on - strandat 949.590 kb on - strandat 949.590 kb on - strandat 949.625 kb on - strandat 949.855 kb on - strand, within GFF949at 949.877 kb on + strand, within GFF949at 949.919 kb on - strand, within GFF949at 949.926 kb on - strand, within GFF949at 949.946 kb on + strand, within GFF949at 949.976 kb on - strand, within GFF949at 950.021 kb on - strand, within GFF949at 950.021 kb on - strand, within GFF949at 950.023 kb on + strand, within GFF949at 950.082 kb on + strand, within GFF949at 950.145 kb on - strand, within GFF949at 950.148 kb on + strand, within GFF949at 950.193 kb on - strand, within GFF949at 950.193 kb on - strand, within GFF949at 950.193 kb on - strand, within GFF949at 950.286 kb on + strand, within GFF949at 950.286 kb on + strand, within GFF949at 950.319 kb on + strand, within GFF949at 950.319 kb on + strand, within GFF949at 950.379 kb on - strand, within GFF949at 950.445 kb on - strand, within GFF949at 950.450 kb on - strand, within GFF949at 950.478 kb on - strand, within GFF949at 950.479 kb on - strand, within GFF949at 950.487 kb on + strand, within GFF949at 950.495 kb on - strand, within GFF949at 950.514 kb on - strand, within GFF949at 950.529 kb on - strand, within GFF949at 950.565 kb on + strand, within GFF949at 950.595 kb on - strand, within GFF949at 950.609 kb on + strand, within GFF949at 950.609 kb on - strand, within GFF949

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
947,270 - GFF946 0.29 -3.1
947,294 - GFF946 0.32 -1.7
947,320 + GFF946 0.35 +0.0
947,323 - GFF946 0.35 -1.1
947,372 - GFF946 0.41 -1.3
947,374 - GFF946 0.41 -0.8
947,374 - GFF946 0.41 +1.0
947,374 - GFF946 0.41 +0.7
947,419 + GFF946 0.46 +0.8
947,470 + GFF946 0.52 -0.9
947,470 + GFF946 0.52 +0.1
947,480 + GFF946 0.53 +0.8
947,525 + GFF946 0.58 +1.6
947,525 + GFF946 0.58 -0.7
947,555 + GFF946 0.61 +0.9
947,580 - GFF946 0.64 +0.8
947,593 - GFF946 0.65 +0.3
947,598 - GFF946 0.66 +1.6
947,603 - GFF946 0.66 +0.5
947,618 - GFF946 0.68 -0.4
947,620 - GFF946 0.68 +0.0
947,620 - GFF946 0.68 +0.1
947,630 - GFF946 0.69 -0.1
947,664 - GFF946 0.73 -1.5
947,665 + GFF946 0.73 +0.7
947,681 + GFF946 0.75 -0.3
947,686 + GFF946 0.75 -0.8
947,689 - GFF946 0.76 -0.6
947,689 - GFF946 0.76 +0.9
947,689 - GFF946 0.76 -0.5
947,689 - GFF946 0.76 +0.9
947,689 - GFF946 0.76 +0.7
947,689 - GFF946 0.76 -0.8
947,691 + GFF946 0.76 +0.7
947,694 - GFF946 0.76 -0.4
947,699 - GFF946 0.77 +2.9
947,704 + GFF946 0.77 +0.2
947,730 + GFF946 0.80 -0.8
947,730 + GFF946 0.80 +0.3
947,749 + GFF946 0.82 +0.1
947,750 - GFF946 0.82 +0.0
947,776 - GFF946 0.85 -0.8
947,794 - GFF946 0.87 -1.0
947,835 + +0.2
947,835 + -0.0
947,840 + -1.2
947,840 + -0.5
947,840 + -0.7
947,848 - -0.0
947,848 - -1.0
947,853 - -0.1
947,869 - -1.1
947,959 + GFF947 0.30 +0.2
947,959 + GFF947 0.30 +1.1
947,960 + GFF947 0.31 +1.6
947,960 + GFF947 0.31 +0.7
947,960 + GFF947 0.31 -1.9
947,968 - GFF947 0.35 +0.3
947,968 - GFF947 0.35 +0.8
947,968 - GFF947 0.35 +1.0
947,968 - GFF947 0.35 -1.1
947,968 - GFF947 0.35 +0.7
947,987 + GFF947 0.46 +0.7
947,995 + GFF947 0.50 +0.1
948,003 - GFF947 0.54 +0.1
948,048 + GFF947 0.79 +0.0
948,056 - GFF947 0.84 -0.2
948,066 - GFF947 0.89 -1.3
948,129 + +1.5
948,148 + +0.3
948,148 + +1.1
948,158 + -1.0
948,173 + -1.4
948,175 + +0.5
948,181 - -1.3
948,190 + +2.6
948,219 - +0.1
948,274 + +0.3
948,285 + -0.3
948,304 + -0.5
948,305 - +0.5
948,430 + GFF948 0.14 -1.8
948,438 + GFF948 0.14 -1.4
948,484 - GFF948 0.18 -1.0
948,509 - GFF948 0.19 -0.6
948,513 - GFF948 0.20 -1.3
948,524 + GFF948 0.21 -0.5
948,524 + GFF948 0.21 +0.3
948,532 - GFF948 0.21 -1.4
948,532 - GFF948 0.21 -1.0
948,537 - GFF948 0.21 +0.5
948,674 - GFF948 0.32 +0.8
948,698 - GFF948 0.33 +0.2
948,720 - GFF948 0.35 +1.5
948,725 - GFF948 0.35 -1.1
948,733 + GFF948 0.36 -0.2
948,746 - GFF948 0.37 -0.7
948,746 - GFF948 0.37 -3.1
948,771 - GFF948 0.39 -0.5
948,782 + GFF948 0.39 +0.1
948,823 + GFF948 0.42 -0.5
948,823 + GFF948 0.42 +0.3
948,823 + GFF948 0.42 -1.1
948,860 - GFF948 0.45 +0.2
948,998 - GFF948 0.55 -1.5
948,998 - GFF948 0.55 -2.0
949,033 + GFF948 0.58 -0.2
949,102 - GFF948 0.63 -1.3
949,102 - GFF948 0.63 -0.4
949,107 - GFF948 0.63 -2.5
949,109 - GFF948 0.63 -1.1
949,136 + GFF948 0.65 -1.4
949,164 - GFF948 0.67 -1.8
949,264 - GFF948 0.75 +0.6
949,299 - GFF948 0.77 -1.3
949,305 - GFF948 0.78 -1.0
949,361 + GFF948 0.82 +0.7
949,369 - GFF948 0.82 -0.3
949,396 - GFF948 0.84 -0.2
949,455 + GFF948 0.89 -1.3
949,481 - +0.0
949,500 - -1.3
949,500 - +0.6
949,527 + -0.3
949,530 - +0.3
949,546 + -1.5
949,549 - +0.6
949,569 - -1.1
949,575 - -0.6
949,582 + -2.7
949,582 + -0.8
949,582 + -1.3
949,582 + -1.4
949,590 - -0.8
949,590 - +0.5
949,590 - -1.4
949,590 - -0.4
949,590 - -0.2
949,590 - -1.3
949,590 - -1.7
949,590 - -0.3
949,590 - -2.5
949,590 - +0.1
949,590 - -0.5
949,625 - -0.7
949,855 - GFF949 0.22 +1.0
949,877 + GFF949 0.24 -0.3
949,919 - GFF949 0.28 -0.1
949,926 - GFF949 0.28 -0.4
949,946 + GFF949 0.30 +0.3
949,976 - GFF949 0.33 +1.2
950,021 - GFF949 0.37 -0.8
950,021 - GFF949 0.37 +0.0
950,023 + GFF949 0.37 +0.0
950,082 + GFF949 0.42 -0.1
950,145 - GFF949 0.48 -1.1
950,148 + GFF949 0.48 -0.5
950,193 - GFF949 0.52 -0.4
950,193 - GFF949 0.52 -0.0
950,193 - GFF949 0.52 -2.1
950,286 + GFF949 0.60 +0.0
950,286 + GFF949 0.60 -0.9
950,319 + GFF949 0.63 +2.3
950,319 + GFF949 0.63 -0.7
950,379 - GFF949 0.68 +0.0
950,445 - GFF949 0.74 +0.7
950,450 - GFF949 0.75 -0.3
950,478 - GFF949 0.77 -0.7
950,479 - GFF949 0.77 +1.8
950,487 + GFF949 0.78 -0.7
950,495 - GFF949 0.79 -0.8
950,514 - GFF949 0.80 +0.3
950,529 - GFF949 0.82 -2.5
950,565 + GFF949 0.85 +1.3
950,595 - GFF949 0.88 -1.0
950,609 + GFF949 0.89 -0.1
950,609 - GFF949 0.89 -1.8

Or see this region's nucleotide sequence