Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF878 and GFF879 overlap by 1 nucleotides GFF879 and GFF880 are separated by 447 nucleotides GFF880 and GFF881 overlap by 4 nucleotides
GFF878 - Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2), at 866,654 to 870,373
GFF878
GFF879 - CobW GTPase involved in cobalt insertion for B12 biosynthesis, at 870,373 to 871,425
GFF879
GFF880 - PsbAd protein, at 871,873 to 872,250
GFF880
GFF881 - Maleylacetoacetate isomerase (EC 5.2.1.2) @ Glutathione S-transferase, zeta (EC 2.5.1.18), at 872,247 to 872,891
GFF881
Position (kb) 870
871
872 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 869.411 kb on - strand, within GFF878 at 869.440 kb on + strand, within GFF878 at 869.440 kb on + strand, within GFF878 at 869.498 kb on + strand, within GFF878 at 869.521 kb on + strand, within GFF878 at 869.521 kb on + strand, within GFF878 at 869.529 kb on - strand, within GFF878 at 869.529 kb on - strand, within GFF878 at 869.529 kb on - strand, within GFF878 at 869.558 kb on - strand, within GFF878 at 869.601 kb on + strand, within GFF878 at 869.682 kb on - strand, within GFF878 at 869.697 kb on + strand, within GFF878 at 869.756 kb on + strand, within GFF878 at 869.779 kb on + strand, within GFF878 at 869.779 kb on + strand, within GFF878 at 869.826 kb on - strand, within GFF878 at 869.896 kb on + strand, within GFF878 at 869.923 kb on - strand, within GFF878 at 869.948 kb on - strand, within GFF878 at 869.957 kb on + strand, within GFF878 at 869.963 kb on - strand, within GFF878 at 870.078 kb on - strand at 870.093 kb on + strand at 870.104 kb on - strand at 870.118 kb on + strand at 870.118 kb on + strand at 870.126 kb on - strand at 870.126 kb on - strand at 870.126 kb on - strand at 870.182 kb on - strand at 870.191 kb on + strand at 870.191 kb on - strand at 870.191 kb on - strand at 870.191 kb on - strand at 870.376 kb on + strand at 870.384 kb on - strand at 870.384 kb on - strand at 870.385 kb on + strand at 870.386 kb on + strand at 870.386 kb on + strand at 870.387 kb on - strand at 870.394 kb on - strand at 870.423 kb on - strand at 870.423 kb on - strand at 870.423 kb on - strand at 870.423 kb on - strand at 870.423 kb on - strand at 870.423 kb on - strand at 870.423 kb on - strand at 870.432 kb on - strand at 870.447 kb on + strand at 870.584 kb on - strand, within GFF879 at 870.602 kb on + strand, within GFF879 at 870.645 kb on + strand, within GFF879 at 870.663 kb on - strand, within GFF879 at 870.670 kb on + strand, within GFF879 at 870.670 kb on + strand, within GFF879 at 870.685 kb on - strand, within GFF879 at 870.742 kb on + strand, within GFF879 at 870.742 kb on + strand, within GFF879 at 870.750 kb on - strand, within GFF879 at 870.838 kb on - strand, within GFF879 at 870.868 kb on + strand, within GFF879 at 870.895 kb on - strand, within GFF879 at 871.021 kb on - strand, within GFF879 at 871.076 kb on + strand, within GFF879 at 871.084 kb on - strand, within GFF879 at 871.084 kb on - strand, within GFF879 at 871.093 kb on + strand, within GFF879 at 871.098 kb on + strand, within GFF879 at 871.101 kb on - strand, within GFF879 at 871.104 kb on + strand, within GFF879 at 871.160 kb on + strand, within GFF879 at 871.190 kb on + strand, within GFF879 at 871.190 kb on + strand, within GFF879 at 871.228 kb on - strand, within GFF879 at 871.238 kb on - strand, within GFF879 at 871.258 kb on - strand, within GFF879 at 871.264 kb on - strand, within GFF879 at 871.308 kb on + strand, within GFF879 at 871.308 kb on + strand, within GFF879 at 871.316 kb on - strand, within GFF879 at 871.316 kb on - strand, within GFF879 at 871.357 kb on + strand at 871.365 kb on - strand at 871.365 kb on - strand at 871.415 kb on + strand at 871.417 kb on - strand at 871.423 kb on - strand at 871.423 kb on - strand at 871.423 kb on - strand at 871.434 kb on - strand at 871.467 kb on - strand at 871.524 kb on - strand at 871.570 kb on - strand at 871.570 kb on - strand at 871.595 kb on - strand at 871.595 kb on - strand at 871.606 kb on - strand at 871.633 kb on + strand at 871.658 kb on - strand at 871.750 kb on - strand at 871.843 kb on - strand at 871.879 kb on + strand at 871.936 kb on + strand, within GFF880 at 871.936 kb on - strand, within GFF880 at 871.944 kb on - strand, within GFF880 at 871.954 kb on - strand, within GFF880 at 871.959 kb on - strand, within GFF880 at 871.978 kb on - strand, within GFF880 at 872.058 kb on + strand, within GFF880 at 872.126 kb on - strand, within GFF880 at 872.230 kb on - strand at 872.300 kb on - strand at 872.323 kb on + strand, within GFF881 at 872.371 kb on + strand, within GFF881 at 872.371 kb on + strand, within GFF881 at 872.374 kb on - strand, within GFF881 at 872.387 kb on + strand, within GFF881 at 872.397 kb on - strand, within GFF881
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 869,411 - GFF878 0.74 +0.2 869,440 + GFF878 0.75 -1.9 869,440 + GFF878 0.75 -1.6 869,498 + GFF878 0.76 -2.3 869,521 + GFF878 0.77 -1.2 869,521 + GFF878 0.77 -0.8 869,529 - GFF878 0.77 +0.9 869,529 - GFF878 0.77 -0.2 869,529 - GFF878 0.77 +0.8 869,558 - GFF878 0.78 +0.3 869,601 + GFF878 0.79 -3.8 869,682 - GFF878 0.81 -1.0 869,697 + GFF878 0.82 -1.1 869,756 + GFF878 0.83 -2.3 869,779 + GFF878 0.84 -2.5 869,779 + GFF878 0.84 +0.3 869,826 - GFF878 0.85 -0.7 869,896 + GFF878 0.87 -2.1 869,923 - GFF878 0.88 -2.6 869,948 - GFF878 0.89 -2.5 869,957 + GFF878 0.89 -2.1 869,963 - GFF878 0.89 -1.2 870,078 - -1.7 870,093 + -2.2 870,104 - -1.8 870,118 + +0.3 870,118 + -0.5 870,126 - -1.4 870,126 - -1.0 870,126 - +1.1 870,182 - +0.3 870,191 + -1.6 870,191 - -1.7 870,191 - -0.2 870,191 - -1.7 870,376 + -1.4 870,384 - -0.4 870,384 - -0.4 870,385 + -0.8 870,386 + +1.3 870,386 + +0.1 870,387 - +1.1 870,394 - -1.5 870,423 - -1.4 870,423 - +0.5 870,423 - -1.1 870,423 - -0.7 870,423 - -0.5 870,423 - +0.3 870,423 - -1.5 870,432 - -1.0 870,447 + +0.0 870,584 - GFF879 0.20 -1.4 870,602 + GFF879 0.22 -1.0 870,645 + GFF879 0.26 -2.2 870,663 - GFF879 0.28 -2.5 870,670 + GFF879 0.28 -2.6 870,670 + GFF879 0.28 -2.7 870,685 - GFF879 0.30 -2.8 870,742 + GFF879 0.35 -0.4 870,742 + GFF879 0.35 -2.5 870,750 - GFF879 0.36 -1.8 870,838 - GFF879 0.44 -0.7 870,868 + GFF879 0.47 -0.2 870,895 - GFF879 0.50 -1.2 871,021 - GFF879 0.62 -1.6 871,076 + GFF879 0.67 -2.6 871,084 - GFF879 0.68 +0.3 871,084 - GFF879 0.68 -1.1 871,093 + GFF879 0.68 -2.1 871,098 + GFF879 0.69 -1.8 871,101 - GFF879 0.69 +0.3 871,104 + GFF879 0.69 -0.2 871,160 + GFF879 0.75 -1.2 871,190 + GFF879 0.78 -2.1 871,190 + GFF879 0.78 -2.4 871,228 - GFF879 0.81 -1.7 871,238 - GFF879 0.82 -1.4 871,258 - GFF879 0.84 -0.8 871,264 - GFF879 0.85 +0.3 871,308 + GFF879 0.89 -2.8 871,308 + GFF879 0.89 +0.0 871,316 - GFF879 0.90 +0.3 871,316 - GFF879 0.90 -0.7 871,357 + +1.2 871,365 - -1.8 871,365 - -0.7 871,415 + -0.7 871,417 - +0.8 871,423 - +2.0 871,423 - -0.4 871,423 - +1.9 871,434 - -0.3 871,467 - +0.3 871,524 - -0.7 871,570 - -0.7 871,570 - -0.5 871,595 - +0.4 871,595 - +0.5 871,606 - +1.1 871,633 + +0.6 871,658 - -0.8 871,750 - +0.7 871,843 - -1.6 871,879 + +0.4 871,936 + GFF880 0.17 -1.0 871,936 - GFF880 0.17 +0.5 871,944 - GFF880 0.19 -0.3 871,954 - GFF880 0.21 +0.5 871,959 - GFF880 0.23 +1.3 871,978 - GFF880 0.28 +0.6 872,058 + GFF880 0.49 -0.2 872,126 - GFF880 0.67 +0.8 872,230 - +0.6 872,300 - +0.4 872,323 + GFF881 0.12 -0.5 872,371 + GFF881 0.19 -0.2 872,371 + GFF881 0.19 +0.3 872,374 - GFF881 0.20 -1.3 872,387 + GFF881 0.22 -0.2 872,397 - GFF881 0.23 -0.7
Or see this region's nucleotide sequence