Strain Fitness in Sphingobium sp. HT1-2 around GFF878

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF876 and GFF877 overlap by 1 nucleotidesGFF877 and GFF878 are separated by 2 nucleotidesGFF878 and GFF879 overlap by 1 nucleotides GFF876 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 865,411 to 866,046 GFF876 GFF877 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis, at 866,046 to 866,651 GFF877 GFF878 - Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2), at 866,654 to 870,373 GFF878 GFF879 - CobW GTPase involved in cobalt insertion for B12 biosynthesis, at 870,373 to 871,425 GFF879 Position (kb) 866 867 868 869 870 871Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 865.686 kb on + strand, within GFF876at 865.686 kb on + strand, within GFF876at 865.689 kb on - strand, within GFF876at 865.689 kb on - strand, within GFF876at 865.691 kb on + strand, within GFF876at 865.699 kb on - strand, within GFF876at 865.712 kb on + strand, within GFF876at 865.720 kb on - strand, within GFF876at 865.722 kb on - strand, within GFF876at 865.739 kb on + strand, within GFF876at 865.740 kb on - strand, within GFF876at 865.744 kb on + strand, within GFF876at 865.766 kb on - strand, within GFF876at 865.806 kb on - strand, within GFF876at 865.834 kb on - strand, within GFF876at 865.848 kb on - strand, within GFF876at 865.857 kb on + strand, within GFF876at 865.857 kb on + strand, within GFF876at 865.857 kb on + strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.891 kb on - strand, within GFF876at 865.905 kb on - strand, within GFF876at 865.916 kb on + strand, within GFF876at 865.925 kb on + strand, within GFF876at 865.949 kb on + strand, within GFF876at 866.007 kb on - strandat 866.174 kb on + strand, within GFF877at 866.183 kb on + strand, within GFF877at 866.193 kb on + strand, within GFF877at 866.240 kb on + strand, within GFF877at 866.245 kb on + strand, within GFF877at 866.362 kb on + strand, within GFF877at 866.386 kb on + strand, within GFF877at 866.386 kb on + strand, within GFF877at 866.386 kb on + strand, within GFF877at 866.447 kb on + strand, within GFF877at 866.477 kb on - strand, within GFF877at 866.505 kb on - strand, within GFF877at 866.505 kb on - strand, within GFF877at 866.505 kb on - strand, within GFF877at 866.505 kb on - strand, within GFF877at 866.505 kb on - strand, within GFF877at 866.512 kb on + strand, within GFF877at 866.520 kb on - strand, within GFF877at 866.524 kb on + strand, within GFF877at 866.525 kb on - strand, within GFF877at 866.526 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.661 kb on + strandat 866.683 kb on + strandat 866.726 kb on - strandat 866.727 kb on + strandat 866.748 kb on + strandat 866.756 kb on - strandat 866.758 kb on + strandat 866.815 kb on - strandat 866.825 kb on - strandat 866.910 kb on + strandat 866.912 kb on + strandat 866.918 kb on - strandat 866.918 kb on - strandat 866.918 kb on - strandat 866.943 kb on + strandat 866.971 kb on - strandat 867.023 kb on + strandat 867.031 kb on - strand, within GFF878at 867.057 kb on - strand, within GFF878at 867.059 kb on + strand, within GFF878at 867.059 kb on + strand, within GFF878at 867.067 kb on - strand, within GFF878at 867.124 kb on + strand, within GFF878at 867.145 kb on + strand, within GFF878at 867.164 kb on + strand, within GFF878at 867.172 kb on - strand, within GFF878at 867.215 kb on - strand, within GFF878at 867.215 kb on - strand, within GFF878at 867.215 kb on - strand, within GFF878at 867.234 kb on - strand, within GFF878at 867.246 kb on + strand, within GFF878at 867.447 kb on + strand, within GFF878at 867.546 kb on - strand, within GFF878at 867.591 kb on - strand, within GFF878at 867.601 kb on + strand, within GFF878at 867.652 kb on + strand, within GFF878at 867.684 kb on + strand, within GFF878at 867.703 kb on + strand, within GFF878at 867.703 kb on + strand, within GFF878at 867.703 kb on + strand, within GFF878at 867.703 kb on + strand, within GFF878at 867.711 kb on - strand, within GFF878at 867.945 kb on - strand, within GFF878at 867.945 kb on - strand, within GFF878at 868.066 kb on + strand, within GFF878at 868.066 kb on + strand, within GFF878at 868.066 kb on + strand, within GFF878at 868.108 kb on + strand, within GFF878at 868.114 kb on + strand, within GFF878at 868.120 kb on + strand, within GFF878at 868.169 kb on + strand, within GFF878at 868.176 kb on + strand, within GFF878at 868.225 kb on - strand, within GFF878at 868.241 kb on - strand, within GFF878at 868.271 kb on + strand, within GFF878at 868.279 kb on - strand, within GFF878at 868.279 kb on - strand, within GFF878at 868.295 kb on - strand, within GFF878at 868.389 kb on + strand, within GFF878at 868.397 kb on - strand, within GFF878at 868.426 kb on - strand, within GFF878at 868.521 kb on - strand, within GFF878at 868.540 kb on - strand, within GFF878at 868.612 kb on + strand, within GFF878at 868.678 kb on + strand, within GFF878at 868.803 kb on + strand, within GFF878at 868.815 kb on - strand, within GFF878at 868.967 kb on + strand, within GFF878at 869.080 kb on + strand, within GFF878at 869.083 kb on - strand, within GFF878at 869.131 kb on + strand, within GFF878at 869.156 kb on + strand, within GFF878at 869.194 kb on - strand, within GFF878at 869.226 kb on - strand, within GFF878at 869.245 kb on + strand, within GFF878at 869.253 kb on - strand, within GFF878at 869.253 kb on - strand, within GFF878at 869.258 kb on - strand, within GFF878at 869.258 kb on - strand, within GFF878at 869.260 kb on + strand, within GFF878at 869.273 kb on - strand, within GFF878at 869.311 kb on - strand, within GFF878at 869.411 kb on - strand, within GFF878at 869.440 kb on + strand, within GFF878at 869.440 kb on + strand, within GFF878at 869.498 kb on + strand, within GFF878at 869.521 kb on + strand, within GFF878at 869.521 kb on + strand, within GFF878at 869.529 kb on - strand, within GFF878at 869.529 kb on - strand, within GFF878at 869.529 kb on - strand, within GFF878at 869.558 kb on - strand, within GFF878at 869.601 kb on + strand, within GFF878at 869.682 kb on - strand, within GFF878at 869.697 kb on + strand, within GFF878at 869.756 kb on + strand, within GFF878at 869.779 kb on + strand, within GFF878at 869.779 kb on + strand, within GFF878at 869.826 kb on - strand, within GFF878at 869.896 kb on + strand, within GFF878at 869.923 kb on - strand, within GFF878at 869.948 kb on - strand, within GFF878at 869.957 kb on + strand, within GFF878at 869.963 kb on - strand, within GFF878at 870.078 kb on - strandat 870.093 kb on + strandat 870.104 kb on - strandat 870.118 kb on + strandat 870.118 kb on + strandat 870.126 kb on - strandat 870.126 kb on - strandat 870.126 kb on - strandat 870.182 kb on - strandat 870.191 kb on + strandat 870.191 kb on - strandat 870.191 kb on - strandat 870.191 kb on - strandat 870.376 kb on + strandat 870.384 kb on - strandat 870.384 kb on - strandat 870.385 kb on + strandat 870.386 kb on + strandat 870.386 kb on + strandat 870.387 kb on - strandat 870.394 kb on - strandat 870.423 kb on - strandat 870.423 kb on - strandat 870.423 kb on - strandat 870.423 kb on - strandat 870.423 kb on - strandat 870.423 kb on - strandat 870.423 kb on - strandat 870.432 kb on - strandat 870.447 kb on + strandat 870.584 kb on - strand, within GFF879at 870.602 kb on + strand, within GFF879at 870.645 kb on + strand, within GFF879at 870.663 kb on - strand, within GFF879at 870.670 kb on + strand, within GFF879at 870.670 kb on + strand, within GFF879at 870.685 kb on - strand, within GFF879at 870.742 kb on + strand, within GFF879at 870.742 kb on + strand, within GFF879at 870.750 kb on - strand, within GFF879at 870.838 kb on - strand, within GFF879at 870.868 kb on + strand, within GFF879at 870.895 kb on - strand, within GFF879at 871.021 kb on - strand, within GFF879at 871.076 kb on + strand, within GFF879at 871.084 kb on - strand, within GFF879at 871.084 kb on - strand, within GFF879at 871.093 kb on + strand, within GFF879at 871.098 kb on + strand, within GFF879at 871.101 kb on - strand, within GFF879at 871.104 kb on + strand, within GFF879at 871.160 kb on + strand, within GFF879at 871.190 kb on + strand, within GFF879at 871.190 kb on + strand, within GFF879at 871.228 kb on - strand, within GFF879at 871.238 kb on - strand, within GFF879at 871.258 kb on - strand, within GFF879at 871.264 kb on - strand, within GFF879at 871.308 kb on + strand, within GFF879at 871.308 kb on + strand, within GFF879at 871.316 kb on - strand, within GFF879at 871.316 kb on - strand, within GFF879at 871.357 kb on + strandat 871.365 kb on - strandat 871.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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865,686 + GFF876 0.43 +1.5
865,686 + GFF876 0.43 -0.7
865,689 - GFF876 0.44 -0.6
865,689 - GFF876 0.44 -0.1
865,691 + GFF876 0.44 -0.3
865,699 - GFF876 0.45 -1.0
865,712 + GFF876 0.47 +0.9
865,720 - GFF876 0.49 +0.7
865,722 - GFF876 0.49 +0.2
865,739 + GFF876 0.52 +0.5
865,740 - GFF876 0.52 +0.3
865,744 + GFF876 0.52 -0.1
865,766 - GFF876 0.56 +1.1
865,806 - GFF876 0.62 +0.3
865,834 - GFF876 0.67 -0.6
865,848 - GFF876 0.69 +0.8
865,857 + GFF876 0.70 +0.9
865,857 + GFF876 0.70 +0.9
865,857 + GFF876 0.70 +0.2
865,865 - GFF876 0.71 -1.8
865,865 - GFF876 0.71 -1.2
865,865 - GFF876 0.71 +1.0
865,891 - GFF876 0.75 -1.5
865,905 - GFF876 0.78 -0.3
865,916 + GFF876 0.79 +0.7
865,925 + GFF876 0.81 -0.6
865,949 + GFF876 0.85 +0.6
866,007 - -1.1
866,174 + GFF877 0.21 -1.7
866,183 + GFF877 0.23 -1.0
866,193 + GFF877 0.24 -0.5
866,240 + GFF877 0.32 -2.0
866,245 + GFF877 0.33 +1.9
866,362 + GFF877 0.52 -1.5
866,386 + GFF877 0.56 -1.9
866,386 + GFF877 0.56 -2.1
866,386 + GFF877 0.56 -1.4
866,447 + GFF877 0.66 +0.3
866,477 - GFF877 0.71 -1.1
866,505 - GFF877 0.76 -0.2
866,505 - GFF877 0.76 -0.8
866,505 - GFF877 0.76 -0.8
866,505 - GFF877 0.76 +0.2
866,505 - GFF877 0.76 -1.8
866,512 + GFF877 0.77 -2.4
866,520 - GFF877 0.78 -2.3
866,524 + GFF877 0.79 -1.9
866,525 - GFF877 0.79 -1.8
866,526 - GFF877 0.79 -1.2
866,532 - GFF877 0.80 -2.1
866,532 - GFF877 0.80 -1.9
866,532 - GFF877 0.80 -0.2
866,532 - GFF877 0.80 -0.2
866,661 + -1.8
866,683 + +1.4
866,726 - -2.4
866,727 + -1.9
866,748 + -0.8
866,756 - -1.4
866,758 + -1.8
866,815 - -0.8
866,825 - -1.7
866,910 + -1.8
866,912 + +0.5
866,918 - -1.0
866,918 - -2.2
866,918 - -2.0
866,943 + +0.0
866,971 - -0.2
867,023 + -1.1
867,031 - GFF878 0.10 -1.8
867,057 - GFF878 0.11 -0.7
867,059 + GFF878 0.11 -1.6
867,059 + GFF878 0.11 -0.8
867,067 - GFF878 0.11 -0.9
867,124 + GFF878 0.13 -1.8
867,145 + GFF878 0.13 -1.8
867,164 + GFF878 0.14 -2.4
867,172 - GFF878 0.14 -2.5
867,215 - GFF878 0.15 -0.5
867,215 - GFF878 0.15 -1.5
867,215 - GFF878 0.15 -1.1
867,234 - GFF878 0.16 -2.8
867,246 + GFF878 0.16 -1.2
867,447 + GFF878 0.21 +1.3
867,546 - GFF878 0.24 -1.4
867,591 - GFF878 0.25 -3.0
867,601 + GFF878 0.25 +2.3
867,652 + GFF878 0.27 -1.5
867,684 + GFF878 0.28 -0.5
867,703 + GFF878 0.28 -1.0
867,703 + GFF878 0.28 -0.8
867,703 + GFF878 0.28 -2.6
867,703 + GFF878 0.28 -2.0
867,711 - GFF878 0.28 -1.4
867,945 - GFF878 0.35 -1.2
867,945 - GFF878 0.35 -2.1
868,066 + GFF878 0.38 -2.7
868,066 + GFF878 0.38 -1.4
868,066 + GFF878 0.38 -1.4
868,108 + GFF878 0.39 -2.2
868,114 + GFF878 0.39 -0.5
868,120 + GFF878 0.39 -1.1
868,169 + GFF878 0.41 -2.2
868,176 + GFF878 0.41 -2.0
868,225 - GFF878 0.42 -0.7
868,241 - GFF878 0.43 -1.7
868,271 + GFF878 0.43 -0.2
868,279 - GFF878 0.44 +0.1
868,279 - GFF878 0.44 -0.1
868,295 - GFF878 0.44 -1.0
868,389 + GFF878 0.47 -1.4
868,397 - GFF878 0.47 +0.2
868,426 - GFF878 0.48 +0.2
868,521 - GFF878 0.50 -1.4
868,540 - GFF878 0.51 -2.7
868,612 + GFF878 0.53 -1.1
868,678 + GFF878 0.54 -1.7
868,803 + GFF878 0.58 -2.6
868,815 - GFF878 0.58 -1.4
868,967 + GFF878 0.62 -0.5
869,080 + GFF878 0.65 -0.8
869,083 - GFF878 0.65 -0.4
869,131 + GFF878 0.67 -1.2
869,156 + GFF878 0.67 -0.8
869,194 - GFF878 0.68 -1.0
869,226 - GFF878 0.69 -1.5
869,245 + GFF878 0.70 -1.7
869,253 - GFF878 0.70 -1.5
869,253 - GFF878 0.70 -2.3
869,258 - GFF878 0.70 -1.9
869,258 - GFF878 0.70 -1.2
869,260 + GFF878 0.70 -2.1
869,273 - GFF878 0.70 -0.7
869,311 - GFF878 0.71 +0.5
869,411 - GFF878 0.74 +0.2
869,440 + GFF878 0.75 -1.9
869,440 + GFF878 0.75 -1.6
869,498 + GFF878 0.76 -2.3
869,521 + GFF878 0.77 -1.2
869,521 + GFF878 0.77 -0.8
869,529 - GFF878 0.77 +0.9
869,529 - GFF878 0.77 -0.2
869,529 - GFF878 0.77 +0.8
869,558 - GFF878 0.78 +0.3
869,601 + GFF878 0.79 -3.8
869,682 - GFF878 0.81 -1.0
869,697 + GFF878 0.82 -1.1
869,756 + GFF878 0.83 -2.3
869,779 + GFF878 0.84 -2.5
869,779 + GFF878 0.84 +0.3
869,826 - GFF878 0.85 -0.7
869,896 + GFF878 0.87 -2.1
869,923 - GFF878 0.88 -2.6
869,948 - GFF878 0.89 -2.5
869,957 + GFF878 0.89 -2.1
869,963 - GFF878 0.89 -1.2
870,078 - -1.7
870,093 + -2.2
870,104 - -1.8
870,118 + +0.3
870,118 + -0.5
870,126 - -1.4
870,126 - -1.0
870,126 - +1.1
870,182 - +0.3
870,191 + -1.6
870,191 - -1.7
870,191 - -0.2
870,191 - -1.7
870,376 + -1.4
870,384 - -0.4
870,384 - -0.4
870,385 + -0.8
870,386 + +1.3
870,386 + +0.1
870,387 - +1.1
870,394 - -1.5
870,423 - -1.4
870,423 - +0.5
870,423 - -1.1
870,423 - -0.7
870,423 - -0.5
870,423 - +0.3
870,423 - -1.5
870,432 - -1.0
870,447 + +0.0
870,584 - GFF879 0.20 -1.4
870,602 + GFF879 0.22 -1.0
870,645 + GFF879 0.26 -2.2
870,663 - GFF879 0.28 -2.5
870,670 + GFF879 0.28 -2.6
870,670 + GFF879 0.28 -2.7
870,685 - GFF879 0.30 -2.8
870,742 + GFF879 0.35 -0.4
870,742 + GFF879 0.35 -2.5
870,750 - GFF879 0.36 -1.8
870,838 - GFF879 0.44 -0.7
870,868 + GFF879 0.47 -0.2
870,895 - GFF879 0.50 -1.2
871,021 - GFF879 0.62 -1.6
871,076 + GFF879 0.67 -2.6
871,084 - GFF879 0.68 +0.3
871,084 - GFF879 0.68 -1.1
871,093 + GFF879 0.68 -2.1
871,098 + GFF879 0.69 -1.8
871,101 - GFF879 0.69 +0.3
871,104 + GFF879 0.69 -0.2
871,160 + GFF879 0.75 -1.2
871,190 + GFF879 0.78 -2.1
871,190 + GFF879 0.78 -2.4
871,228 - GFF879 0.81 -1.7
871,238 - GFF879 0.82 -1.4
871,258 - GFF879 0.84 -0.8
871,264 - GFF879 0.85 +0.3
871,308 + GFF879 0.89 -2.8
871,308 + GFF879 0.89 +0.0
871,316 - GFF879 0.90 +0.3
871,316 - GFF879 0.90 -0.7
871,357 + +1.2
871,365 - -1.8
871,365 - -0.7

Or see this region's nucleotide sequence