Strain Fitness in Sphingobium sp. HT1-2 around GFF876

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF875 and GFF876 are separated by 4 nucleotidesGFF876 and GFF877 overlap by 1 nucleotidesGFF877 and GFF878 are separated by 2 nucleotides GFF875 - Efflux ABC transporter, permease/ATP-binding protein mlr7818, at 863,562 to 865,406 GFF875 GFF876 - Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family, at 865,411 to 866,046 GFF876 GFF877 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis, at 866,046 to 866,651 GFF877 GFF878 - Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2), at 866,654 to 870,373 GFF878 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 864.411 kb on - strand, within GFF875at 864.417 kb on + strand, within GFF875at 864.458 kb on + strand, within GFF875at 864.461 kb on - strand, within GFF875at 864.466 kb on - strand, within GFF875at 864.466 kb on - strand, within GFF875at 864.490 kb on + strand, within GFF875at 864.490 kb on + strand, within GFF875at 864.498 kb on - strand, within GFF875at 864.500 kb on + strand, within GFF875at 864.505 kb on + strand, within GFF875at 864.508 kb on - strand, within GFF875at 864.562 kb on - strand, within GFF875at 864.571 kb on - strand, within GFF875at 864.571 kb on - strand, within GFF875at 864.582 kb on - strand, within GFF875at 864.606 kb on + strand, within GFF875at 864.614 kb on - strand, within GFF875at 864.614 kb on - strand, within GFF875at 864.641 kb on - strand, within GFF875at 864.655 kb on + strand, within GFF875at 864.691 kb on + strand, within GFF875at 864.691 kb on + strand, within GFF875at 864.691 kb on + strand, within GFF875at 864.748 kb on + strand, within GFF875at 864.749 kb on + strand, within GFF875at 864.768 kb on - strand, within GFF875at 864.770 kb on + strand, within GFF875at 864.786 kb on + strand, within GFF875at 864.786 kb on + strand, within GFF875at 864.799 kb on - strand, within GFF875at 864.799 kb on - strand, within GFF875at 864.821 kb on - strand, within GFF875at 864.826 kb on - strand, within GFF875at 864.882 kb on + strand, within GFF875at 864.885 kb on - strand, within GFF875at 864.885 kb on - strand, within GFF875at 864.885 kb on - strand, within GFF875at 864.890 kb on - strand, within GFF875at 864.895 kb on - strand, within GFF875at 864.895 kb on - strand, within GFF875at 865.004 kb on + strand, within GFF875at 865.006 kb on + strand, within GFF875at 865.013 kb on - strand, within GFF875at 865.033 kb on + strand, within GFF875at 865.041 kb on - strand, within GFF875at 865.041 kb on - strand, within GFF875at 865.041 kb on - strand, within GFF875at 865.043 kb on + strand, within GFF875at 865.051 kb on + strand, within GFF875at 865.051 kb on - strand, within GFF875at 865.059 kb on - strand, within GFF875at 865.085 kb on + strand, within GFF875at 865.093 kb on - strand, within GFF875at 865.094 kb on - strand, within GFF875at 865.114 kb on - strand, within GFF875at 865.139 kb on - strand, within GFF875at 865.174 kb on + strand, within GFF875at 865.195 kb on - strand, within GFF875at 865.203 kb on - strand, within GFF875at 865.214 kb on + strand, within GFF875at 865.222 kb on - strandat 865.295 kb on + strandat 865.298 kb on - strandat 865.313 kb on + strandat 865.342 kb on - strandat 865.349 kb on + strandat 865.387 kb on - strandat 865.431 kb on - strandat 865.460 kb on + strandat 865.468 kb on - strandat 865.470 kb on + strandat 865.470 kb on + strandat 865.470 kb on + strandat 865.478 kb on - strand, within GFF876at 865.478 kb on - strand, within GFF876at 865.478 kb on - strand, within GFF876at 865.480 kb on + strand, within GFF876at 865.491 kb on + strand, within GFF876at 865.508 kb on - strand, within GFF876at 865.508 kb on - strand, within GFF876at 865.510 kb on + strand, within GFF876at 865.513 kb on - strand, within GFF876at 865.513 kb on - strand, within GFF876at 865.518 kb on - strand, within GFF876at 865.518 kb on - strand, within GFF876at 865.525 kb on + strand, within GFF876at 865.533 kb on - strand, within GFF876at 865.559 kb on + strand, within GFF876at 865.577 kb on - strand, within GFF876at 865.584 kb on - strand, within GFF876at 865.589 kb on - strand, within GFF876at 865.593 kb on + strand, within GFF876at 865.644 kb on + strand, within GFF876at 865.686 kb on + strand, within GFF876at 865.686 kb on + strand, within GFF876at 865.689 kb on - strand, within GFF876at 865.689 kb on - strand, within GFF876at 865.691 kb on + strand, within GFF876at 865.699 kb on - strand, within GFF876at 865.712 kb on + strand, within GFF876at 865.720 kb on - strand, within GFF876at 865.722 kb on - strand, within GFF876at 865.739 kb on + strand, within GFF876at 865.740 kb on - strand, within GFF876at 865.744 kb on + strand, within GFF876at 865.766 kb on - strand, within GFF876at 865.806 kb on - strand, within GFF876at 865.834 kb on - strand, within GFF876at 865.848 kb on - strand, within GFF876at 865.857 kb on + strand, within GFF876at 865.857 kb on + strand, within GFF876at 865.857 kb on + strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.865 kb on - strand, within GFF876at 865.891 kb on - strand, within GFF876at 865.905 kb on - strand, within GFF876at 865.916 kb on + strand, within GFF876at 865.925 kb on + strand, within GFF876at 865.949 kb on + strand, within GFF876at 866.007 kb on - strandat 866.174 kb on + strand, within GFF877at 866.183 kb on + strand, within GFF877at 866.193 kb on + strand, within GFF877at 866.240 kb on + strand, within GFF877at 866.245 kb on + strand, within GFF877at 866.362 kb on + strand, within GFF877at 866.386 kb on + strand, within GFF877at 866.386 kb on + strand, within GFF877at 866.386 kb on + strand, within GFF877at 866.447 kb on + strand, within GFF877at 866.477 kb on - strand, within GFF877at 866.505 kb on - strand, within GFF877at 866.505 kb on - strand, within GFF877at 866.505 kb on - strand, within GFF877at 866.505 kb on - strand, within GFF877at 866.505 kb on - strand, within GFF877at 866.512 kb on + strand, within GFF877at 866.520 kb on - strand, within GFF877at 866.524 kb on + strand, within GFF877at 866.525 kb on - strand, within GFF877at 866.526 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.532 kb on - strand, within GFF877at 866.661 kb on + strandat 866.683 kb on + strandat 866.726 kb on - strandat 866.727 kb on + strandat 866.748 kb on + strandat 866.756 kb on - strandat 866.758 kb on + strandat 866.815 kb on - strandat 866.825 kb on - strandat 866.910 kb on + strandat 866.912 kb on + strandat 866.918 kb on - strandat 866.918 kb on - strandat 866.918 kb on - strandat 866.943 kb on + strandat 866.971 kb on - strandat 867.023 kb on + strandat 867.031 kb on - strand, within GFF878

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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864,411 - GFF875 0.46 +0.1
864,417 + GFF875 0.46 -1.4
864,458 + GFF875 0.49 +0.5
864,461 - GFF875 0.49 -0.1
864,466 - GFF875 0.49 +0.4
864,466 - GFF875 0.49 -0.2
864,490 + GFF875 0.50 -0.5
864,490 + GFF875 0.50 +2.6
864,498 - GFF875 0.51 +0.1
864,500 + GFF875 0.51 -0.7
864,505 + GFF875 0.51 +1.1
864,508 - GFF875 0.51 -1.2
864,562 - GFF875 0.54 +0.3
864,571 - GFF875 0.55 -2.1
864,571 - GFF875 0.55 -0.5
864,582 - GFF875 0.55 -0.7
864,606 + GFF875 0.57 -0.3
864,614 - GFF875 0.57 -0.6
864,614 - GFF875 0.57 -0.0
864,641 - GFF875 0.58 +1.2
864,655 + GFF875 0.59 -1.2
864,691 + GFF875 0.61 -1.2
864,691 + GFF875 0.61 +0.5
864,691 + GFF875 0.61 -2.7
864,748 + GFF875 0.64 +0.1
864,749 + GFF875 0.64 +0.3
864,768 - GFF875 0.65 +0.1
864,770 + GFF875 0.65 +0.7
864,786 + GFF875 0.66 +1.0
864,786 + GFF875 0.66 +1.5
864,799 - GFF875 0.67 +0.6
864,799 - GFF875 0.67 -0.9
864,821 - GFF875 0.68 -0.4
864,826 - GFF875 0.69 -0.1
864,882 + GFF875 0.72 -0.4
864,885 - GFF875 0.72 +0.8
864,885 - GFF875 0.72 -0.2
864,885 - GFF875 0.72 -0.1
864,890 - GFF875 0.72 -2.6
864,895 - GFF875 0.72 -0.3
864,895 - GFF875 0.72 -2.7
865,004 + GFF875 0.78 -0.5
865,006 + GFF875 0.78 +0.4
865,013 - GFF875 0.79 +0.8
865,033 + GFF875 0.80 +2.3
865,041 - GFF875 0.80 +0.7
865,041 - GFF875 0.80 +0.5
865,041 - GFF875 0.80 +0.1
865,043 + GFF875 0.80 +1.3
865,051 + GFF875 0.81 -0.4
865,051 - GFF875 0.81 -0.8
865,059 - GFF875 0.81 -1.7
865,085 + GFF875 0.83 +0.8
865,093 - GFF875 0.83 -0.5
865,094 - GFF875 0.83 +0.3
865,114 - GFF875 0.84 +1.7
865,139 - GFF875 0.85 -1.8
865,174 + GFF875 0.87 +0.6
865,195 - GFF875 0.89 -0.8
865,203 - GFF875 0.89 +0.4
865,214 + GFF875 0.90 +0.9
865,222 - -1.0
865,295 + -0.6
865,298 - +0.8
865,313 + -1.0
865,342 - -1.3
865,349 + +0.2
865,387 - -1.1
865,431 - +0.3
865,460 + -1.3
865,468 - -0.6
865,470 + +0.6
865,470 + +0.1
865,470 + +0.6
865,478 - GFF876 0.11 -0.3
865,478 - GFF876 0.11 +0.1
865,478 - GFF876 0.11 -0.4
865,480 + GFF876 0.11 +0.7
865,491 + GFF876 0.13 -0.8
865,508 - GFF876 0.15 +1.2
865,508 - GFF876 0.15 -0.2
865,510 + GFF876 0.16 -0.9
865,513 - GFF876 0.16 -0.8
865,513 - GFF876 0.16 -0.7
865,518 - GFF876 0.17 -2.6
865,518 - GFF876 0.17 -0.9
865,525 + GFF876 0.18 +0.1
865,533 - GFF876 0.19 +0.8
865,559 + GFF876 0.23 +0.9
865,577 - GFF876 0.26 -0.9
865,584 - GFF876 0.27 +0.5
865,589 - GFF876 0.28 +1.6
865,593 + GFF876 0.29 +1.1
865,644 + GFF876 0.37 -0.8
865,686 + GFF876 0.43 +1.5
865,686 + GFF876 0.43 -0.7
865,689 - GFF876 0.44 -0.6
865,689 - GFF876 0.44 -0.1
865,691 + GFF876 0.44 -0.3
865,699 - GFF876 0.45 -1.0
865,712 + GFF876 0.47 +0.9
865,720 - GFF876 0.49 +0.7
865,722 - GFF876 0.49 +0.2
865,739 + GFF876 0.52 +0.5
865,740 - GFF876 0.52 +0.3
865,744 + GFF876 0.52 -0.1
865,766 - GFF876 0.56 +1.1
865,806 - GFF876 0.62 +0.3
865,834 - GFF876 0.67 -0.6
865,848 - GFF876 0.69 +0.8
865,857 + GFF876 0.70 +0.9
865,857 + GFF876 0.70 +0.9
865,857 + GFF876 0.70 +0.2
865,865 - GFF876 0.71 -1.8
865,865 - GFF876 0.71 -1.2
865,865 - GFF876 0.71 +1.0
865,891 - GFF876 0.75 -1.5
865,905 - GFF876 0.78 -0.3
865,916 + GFF876 0.79 +0.7
865,925 + GFF876 0.81 -0.6
865,949 + GFF876 0.85 +0.6
866,007 - -1.1
866,174 + GFF877 0.21 -1.7
866,183 + GFF877 0.23 -1.0
866,193 + GFF877 0.24 -0.5
866,240 + GFF877 0.32 -2.0
866,245 + GFF877 0.33 +1.9
866,362 + GFF877 0.52 -1.5
866,386 + GFF877 0.56 -1.9
866,386 + GFF877 0.56 -2.1
866,386 + GFF877 0.56 -1.4
866,447 + GFF877 0.66 +0.3
866,477 - GFF877 0.71 -1.1
866,505 - GFF877 0.76 -0.2
866,505 - GFF877 0.76 -0.8
866,505 - GFF877 0.76 -0.8
866,505 - GFF877 0.76 +0.2
866,505 - GFF877 0.76 -1.8
866,512 + GFF877 0.77 -2.4
866,520 - GFF877 0.78 -2.3
866,524 + GFF877 0.79 -1.9
866,525 - GFF877 0.79 -1.8
866,526 - GFF877 0.79 -1.2
866,532 - GFF877 0.80 -2.1
866,532 - GFF877 0.80 -1.9
866,532 - GFF877 0.80 -0.2
866,532 - GFF877 0.80 -0.2
866,661 + -1.8
866,683 + +1.4
866,726 - -2.4
866,727 + -1.9
866,748 + -0.8
866,756 - -1.4
866,758 + -1.8
866,815 - -0.8
866,825 - -1.7
866,910 + -1.8
866,912 + +0.5
866,918 - -1.0
866,918 - -2.2
866,918 - -2.0
866,943 + +0.0
866,971 - -0.2
867,023 + -1.1
867,031 - GFF878 0.10 -1.8

Or see this region's nucleotide sequence