Strain Fitness in Sphingobium sp. HT1-2 around GFF828

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF826 and GFF827 overlap by 4 nucleotidesGFF827 and GFF828 overlap by 4 nucleotidesGFF828 and GFF829 overlap by 4 nucleotidesGFF829 and GFF830 overlap by 1 nucleotides GFF826 - Cobalamin synthase (EC 2.7.8.26), at 814,574 to 815,293 GFF826 GFF827 - 'Alpha-ribazole-5'-phosphate phosphatase' transl_table=11, at 815,290 to 815,859 GFF827 GFF828 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 815,856 to 816,869 GFF828 GFF829 - hypothetical protein, at 816,866 to 817,273 GFF829 GFF830 - Outer membrane vitamin B12 receptor BtuB, at 817,273 to 819,228 GFF830 Position (kb) 815 816 817Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 814.862 kb on - strand, within GFF826at 814.862 kb on - strand, within GFF826at 814.862 kb on - strand, within GFF826at 814.875 kb on + strand, within GFF826at 814.895 kb on + strand, within GFF826at 814.896 kb on + strand, within GFF826at 814.896 kb on + strand, within GFF826at 814.904 kb on - strand, within GFF826at 814.925 kb on - strand, within GFF826at 814.953 kb on - strand, within GFF826at 814.953 kb on - strand, within GFF826at 814.953 kb on - strand, within GFF826at 814.953 kb on - strand, within GFF826at 814.976 kb on + strand, within GFF826at 815.021 kb on + strand, within GFF826at 815.029 kb on - strand, within GFF826at 815.029 kb on - strand, within GFF826at 815.034 kb on - strand, within GFF826at 815.049 kb on + strand, within GFF826at 815.057 kb on - strand, within GFF826at 815.094 kb on + strand, within GFF826at 815.099 kb on + strand, within GFF826at 815.102 kb on - strand, within GFF826at 815.102 kb on - strand, within GFF826at 815.164 kb on + strand, within GFF826at 815.225 kb on + strandat 815.252 kb on - strandat 815.279 kb on + strandat 815.286 kb on + strandat 815.287 kb on - strandat 815.287 kb on - strandat 815.296 kb on + strandat 815.303 kb on + strandat 815.310 kb on - strandat 815.322 kb on - strandat 815.336 kb on - strandat 815.358 kb on - strand, within GFF827at 815.358 kb on - strand, within GFF827at 815.360 kb on + strand, within GFF827at 815.365 kb on + strand, within GFF827at 815.370 kb on + strand, within GFF827at 815.373 kb on - strand, within GFF827at 815.373 kb on - strand, within GFF827at 815.393 kb on + strand, within GFF827at 815.448 kb on + strand, within GFF827at 815.448 kb on + strand, within GFF827at 815.462 kb on - strand, within GFF827at 815.467 kb on + strand, within GFF827at 815.473 kb on + strand, within GFF827at 815.510 kb on + strand, within GFF827at 815.593 kb on + strand, within GFF827at 815.600 kb on - strand, within GFF827at 815.601 kb on - strand, within GFF827at 815.606 kb on - strand, within GFF827at 815.645 kb on - strand, within GFF827at 815.735 kb on + strand, within GFF827at 815.735 kb on + strand, within GFF827at 815.741 kb on + strand, within GFF827at 815.743 kb on - strand, within GFF827at 815.743 kb on - strand, within GFF827at 815.753 kb on - strand, within GFF827at 815.773 kb on + strand, within GFF827at 815.890 kb on - strandat 816.012 kb on + strand, within GFF828at 816.069 kb on + strand, within GFF828at 816.159 kb on - strand, within GFF828at 816.161 kb on - strand, within GFF828at 816.225 kb on - strand, within GFF828at 816.306 kb on - strand, within GFF828at 816.308 kb on + strand, within GFF828at 816.318 kb on + strand, within GFF828at 816.326 kb on - strand, within GFF828at 816.332 kb on + strand, within GFF828at 816.333 kb on + strand, within GFF828at 816.460 kb on + strand, within GFF828at 816.489 kb on - strand, within GFF828at 816.765 kb on + strand, within GFF828at 816.773 kb on - strandat 816.801 kb on + strandat 816.804 kb on - strandat 816.892 kb on + strandat 816.892 kb on + strandat 816.892 kb on + strandat 816.900 kb on - strandat 816.929 kb on - strand, within GFF829at 816.929 kb on - strand, within GFF829at 816.929 kb on - strand, within GFF829at 817.014 kb on + strand, within GFF829at 817.014 kb on + strand, within GFF829at 817.022 kb on - strand, within GFF829at 817.022 kb on - strand, within GFF829at 817.023 kb on - strand, within GFF829at 817.027 kb on - strand, within GFF829at 817.035 kb on - strand, within GFF829at 817.035 kb on - strand, within GFF829at 817.035 kb on - strand, within GFF829at 817.041 kb on + strand, within GFF829at 817.043 kb on + strand, within GFF829at 817.049 kb on - strand, within GFF829at 817.068 kb on + strand, within GFF829at 817.068 kb on + strand, within GFF829at 817.068 kb on - strand, within GFF829at 817.076 kb on - strand, within GFF829at 817.093 kb on - strand, within GFF829at 817.098 kb on + strand, within GFF829at 817.103 kb on + strand, within GFF829at 817.103 kb on + strand, within GFF829at 817.103 kb on + strand, within GFF829at 817.103 kb on + strand, within GFF829at 817.103 kb on + strand, within GFF829at 817.103 kb on + strand, within GFF829at 817.103 kb on + strand, within GFF829at 817.105 kb on - strand, within GFF829at 817.105 kb on - strand, within GFF829at 817.106 kb on - strand, within GFF829at 817.106 kb on - strand, within GFF829at 817.111 kb on - strand, within GFF829at 817.111 kb on - strand, within GFF829at 817.111 kb on - strand, within GFF829at 817.111 kb on - strand, within GFF829at 817.111 kb on - strand, within GFF829at 817.111 kb on - strand, within GFF829at 817.111 kb on - strand, within GFF829at 817.111 kb on - strand, within GFF829at 817.111 kb on - strand, within GFF829at 817.132 kb on + strand, within GFF829at 817.132 kb on + strand, within GFF829at 817.132 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.139 kb on + strand, within GFF829at 817.140 kb on - strand, within GFF829at 817.140 kb on - strand, within GFF829at 817.140 kb on - strand, within GFF829at 817.146 kb on + strand, within GFF829at 817.146 kb on + strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.147 kb on - strand, within GFF829at 817.159 kb on - strand, within GFF829at 817.168 kb on + strand, within GFF829at 817.168 kb on + strand, within GFF829at 817.168 kb on + strand, within GFF829at 817.176 kb on - strand, within GFF829at 817.207 kb on - strand, within GFF829at 817.221 kb on + strand, within GFF829at 817.234 kb on - strandat 817.235 kb on - strandat 817.235 kb on - strandat 817.251 kb on - strandat 817.337 kb on + strandat 817.373 kb on + strandat 817.422 kb on + strandat 817.422 kb on + strandat 817.422 kb on + strandat 817.422 kb on + strandat 817.439 kb on + strandat 817.470 kb on + strand, within GFF830at 817.470 kb on + strand, within GFF830at 817.470 kb on + strand, within GFF830at 817.470 kb on + strand, within GFF830at 817.470 kb on + strand, within GFF830at 817.475 kb on + strand, within GFF830at 817.475 kb on + strand, within GFF830at 817.478 kb on - strand, within GFF830at 817.488 kb on - strand, within GFF830at 817.488 kb on - strand, within GFF830at 817.511 kb on + strand, within GFF830at 817.515 kb on + strand, within GFF830at 817.516 kb on + strand, within GFF830at 817.519 kb on - strand, within GFF830at 817.523 kb on - strand, within GFF830at 817.551 kb on - strand, within GFF830at 817.609 kb on + strand, within GFF830at 817.615 kb on + strand, within GFF830at 817.639 kb on - strand, within GFF830at 817.640 kb on + strand, within GFF830at 817.648 kb on - strand, within GFF830at 817.669 kb on - strand, within GFF830at 817.673 kb on + strand, within GFF830at 817.676 kb on - strand, within GFF830at 817.676 kb on - strand, within GFF830at 817.676 kb on - strand, within GFF830at 817.676 kb on - strand, within GFF830at 817.737 kb on + strand, within GFF830at 817.737 kb on + strand, within GFF830at 817.745 kb on - strand, within GFF830at 817.745 kb on - strand, within GFF830at 817.750 kb on - strand, within GFF830at 817.755 kb on - strand, within GFF830at 817.796 kb on + strand, within GFF830at 817.796 kb on + strand, within GFF830at 817.796 kb on + strand, within GFF830at 817.796 kb on + strand, within GFF830at 817.796 kb on + strand, within GFF830at 817.796 kb on + strand, within GFF830at 817.796 kb on + strand, within GFF830at 817.799 kb on - strand, within GFF830at 817.804 kb on - strand, within GFF830at 817.804 kb on - strand, within GFF830at 817.804 kb on - strand, within GFF830at 817.804 kb on - strand, within GFF830at 817.804 kb on - strand, within GFF830at 817.804 kb on - strand, within GFF830at 817.806 kb on + strand, within GFF830at 817.816 kb on + strand, within GFF830

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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814,862 - GFF826 0.40 -2.8
814,862 - GFF826 0.40 -0.7
814,862 - GFF826 0.40 +0.0
814,875 + GFF826 0.42 +0.3
814,895 + GFF826 0.45 -1.0
814,896 + GFF826 0.45 +0.0
814,896 + GFF826 0.45 -0.7
814,904 - GFF826 0.46 -0.8
814,925 - GFF826 0.49 -1.9
814,953 - GFF826 0.53 +0.0
814,953 - GFF826 0.53 +0.0
814,953 - GFF826 0.53 +0.8
814,953 - GFF826 0.53 -1.1
814,976 + GFF826 0.56 -1.1
815,021 + GFF826 0.62 -0.5
815,029 - GFF826 0.63 -1.8
815,029 - GFF826 0.63 -1.7
815,034 - GFF826 0.64 -2.4
815,049 + GFF826 0.66 -1.2
815,057 - GFF826 0.67 -2.4
815,094 + GFF826 0.72 -0.7
815,099 + GFF826 0.73 -2.2
815,102 - GFF826 0.73 -0.5
815,102 - GFF826 0.73 -1.4
815,164 + GFF826 0.82 -0.5
815,225 + -0.1
815,252 - -1.9
815,279 + +0.0
815,286 + -0.9
815,287 - -1.9
815,287 - -1.7
815,296 + +0.9
815,303 + +2.3
815,310 - +0.8
815,322 - -1.8
815,336 - -0.5
815,358 - GFF827 0.12 -2.2
815,358 - GFF827 0.12 -1.7
815,360 + GFF827 0.12 +0.7
815,365 + GFF827 0.13 -0.2
815,370 + GFF827 0.14 -1.6
815,373 - GFF827 0.15 +0.3
815,373 - GFF827 0.15 +0.8
815,393 + GFF827 0.18 +0.3
815,448 + GFF827 0.28 -0.5
815,448 + GFF827 0.28 +0.8
815,462 - GFF827 0.30 -0.8
815,467 + GFF827 0.31 -0.5
815,473 + GFF827 0.32 -0.2
815,510 + GFF827 0.39 -0.2
815,593 + GFF827 0.53 +0.5
815,600 - GFF827 0.54 -1.5
815,601 - GFF827 0.55 +1.3
815,606 - GFF827 0.55 +0.8
815,645 - GFF827 0.62 -0.5
815,735 + GFF827 0.78 -0.9
815,735 + GFF827 0.78 +0.3
815,741 + GFF827 0.79 -0.8
815,743 - GFF827 0.79 -0.8
815,743 - GFF827 0.79 -0.8
815,753 - GFF827 0.81 -0.2
815,773 + GFF827 0.85 +0.2
815,890 - -0.8
816,012 + GFF828 0.15 -0.7
816,069 + GFF828 0.21 -1.0
816,159 - GFF828 0.30 -0.8
816,161 - GFF828 0.30 -3.3
816,225 - GFF828 0.36 -1.9
816,306 - GFF828 0.44 -0.5
816,308 + GFF828 0.45 +0.3
816,318 + GFF828 0.46 -1.8
816,326 - GFF828 0.46 -1.2
816,332 + GFF828 0.47 -2.0
816,333 + GFF828 0.47 -1.1
816,460 + GFF828 0.60 -2.2
816,489 - GFF828 0.62 -1.4
816,765 + GFF828 0.90 -0.2
816,773 - -0.8
816,801 + -1.9
816,804 - -1.6
816,892 + -0.2
816,892 + -2.5
816,892 + +1.3
816,900 - +1.2
816,929 - GFF829 0.15 +0.8
816,929 - GFF829 0.15 -1.1
816,929 - GFF829 0.15 -0.4
817,014 + GFF829 0.36 +0.8
817,014 + GFF829 0.36 -0.1
817,022 - GFF829 0.38 +0.3
817,022 - GFF829 0.38 +1.6
817,023 - GFF829 0.38 -1.4
817,027 - GFF829 0.39 +2.0
817,035 - GFF829 0.41 -0.5
817,035 - GFF829 0.41 -0.5
817,035 - GFF829 0.41 +1.1
817,041 + GFF829 0.43 +1.3
817,043 + GFF829 0.43 -0.6
817,049 - GFF829 0.45 -0.2
817,068 + GFF829 0.50 -0.3
817,068 + GFF829 0.50 -0.1
817,068 - GFF829 0.50 -0.2
817,076 - GFF829 0.51 +1.0
817,093 - GFF829 0.56 -0.1
817,098 + GFF829 0.57 -0.2
817,103 + GFF829 0.58 +0.2
817,103 + GFF829 0.58 -2.0
817,103 + GFF829 0.58 +1.5
817,103 + GFF829 0.58 -0.6
817,103 + GFF829 0.58 +0.4
817,103 + GFF829 0.58 +0.5
817,103 + GFF829 0.58 +1.7
817,105 - GFF829 0.59 -0.0
817,105 - GFF829 0.59 +0.1
817,106 - GFF829 0.59 +0.5
817,106 - GFF829 0.59 +0.1
817,111 - GFF829 0.60 +1.0
817,111 - GFF829 0.60 -2.1
817,111 - GFF829 0.60 -0.1
817,111 - GFF829 0.60 +0.3
817,111 - GFF829 0.60 +0.2
817,111 - GFF829 0.60 -0.5
817,111 - GFF829 0.60 -3.1
817,111 - GFF829 0.60 -0.1
817,111 - GFF829 0.60 +0.1
817,132 + GFF829 0.65 -0.6
817,132 + GFF829 0.65 -0.3
817,132 + GFF829 0.65 -0.6
817,139 + GFF829 0.67 -0.6
817,139 + GFF829 0.67 -1.1
817,139 + GFF829 0.67 -0.6
817,139 + GFF829 0.67 -2.4
817,139 + GFF829 0.67 -0.3
817,139 + GFF829 0.67 +0.1
817,139 + GFF829 0.67 +0.8
817,139 + GFF829 0.67 +1.4
817,139 + GFF829 0.67 +2.0
817,139 + GFF829 0.67 -1.1
817,139 + GFF829 0.67 +0.9
817,139 + GFF829 0.67 +0.3
817,139 + GFF829 0.67 -1.0
817,139 + GFF829 0.67 +0.0
817,139 + GFF829 0.67 -1.6
817,139 + GFF829 0.67 +0.8
817,139 + GFF829 0.67 -0.1
817,139 + GFF829 0.67 -0.7
817,139 + GFF829 0.67 +1.3
817,139 + GFF829 0.67 -1.7
817,139 + GFF829 0.67 +2.1
817,140 - GFF829 0.67 -1.4
817,140 - GFF829 0.67 -2.3
817,140 - GFF829 0.67 +2.0
817,146 + GFF829 0.69 +0.3
817,146 + GFF829 0.69 -0.1
817,147 - GFF829 0.69 +0.1
817,147 - GFF829 0.69 -0.8
817,147 - GFF829 0.69 -0.6
817,147 - GFF829 0.69 +0.7
817,147 - GFF829 0.69 +0.5
817,147 - GFF829 0.69 -0.6
817,147 - GFF829 0.69 +0.6
817,147 - GFF829 0.69 -0.2
817,147 - GFF829 0.69 -1.3
817,147 - GFF829 0.69 +1.5
817,147 - GFF829 0.69 -0.8
817,147 - GFF829 0.69 +0.4
817,147 - GFF829 0.69 +0.7
817,147 - GFF829 0.69 +0.8
817,147 - GFF829 0.69 +0.5
817,147 - GFF829 0.69 -0.1
817,147 - GFF829 0.69 -0.1
817,147 - GFF829 0.69 -1.2
817,147 - GFF829 0.69 -0.2
817,147 - GFF829 0.69 -2.4
817,147 - GFF829 0.69 +1.3
817,147 - GFF829 0.69 -0.7
817,147 - GFF829 0.69 +0.2
817,147 - GFF829 0.69 -0.8
817,147 - GFF829 0.69 +1.0
817,159 - GFF829 0.72 -1.2
817,168 + GFF829 0.74 -0.1
817,168 + GFF829 0.74 -0.1
817,168 + GFF829 0.74 +1.2
817,176 - GFF829 0.76 -0.5
817,207 - GFF829 0.84 +0.5
817,221 + GFF829 0.87 +0.3
817,234 - -0.4
817,235 - -0.1
817,235 - -0.2
817,251 - -0.6
817,337 + -0.2
817,373 + +0.5
817,422 + -0.1
817,422 + +0.4
817,422 + +1.2
817,422 + +0.2
817,439 + -0.2
817,470 + GFF830 0.10 -0.9
817,470 + GFF830 0.10 -0.9
817,470 + GFF830 0.10 -1.8
817,470 + GFF830 0.10 +0.4
817,470 + GFF830 0.10 +1.3
817,475 + GFF830 0.10 +0.3
817,475 + GFF830 0.10 +0.9
817,478 - GFF830 0.10 -0.2
817,488 - GFF830 0.11 -1.1
817,488 - GFF830 0.11 -1.1
817,511 + GFF830 0.12 +0.6
817,515 + GFF830 0.12 +0.7
817,516 + GFF830 0.12 +0.1
817,519 - GFF830 0.13 +0.6
817,523 - GFF830 0.13 -1.7
817,551 - GFF830 0.14 -0.5
817,609 + GFF830 0.17 +1.2
817,615 + GFF830 0.17 -0.9
817,639 - GFF830 0.19 +0.8
817,640 + GFF830 0.19 +0.7
817,648 - GFF830 0.19 +1.0
817,669 - GFF830 0.20 +0.5
817,673 + GFF830 0.20 -0.8
817,676 - GFF830 0.21 -0.5
817,676 - GFF830 0.21 +0.6
817,676 - GFF830 0.21 -0.4
817,676 - GFF830 0.21 +0.6
817,737 + GFF830 0.24 +0.0
817,737 + GFF830 0.24 -2.4
817,745 - GFF830 0.24 -1.1
817,745 - GFF830 0.24 +1.1
817,750 - GFF830 0.24 -0.2
817,755 - GFF830 0.25 +0.6
817,796 + GFF830 0.27 -0.1
817,796 + GFF830 0.27 -0.4
817,796 + GFF830 0.27 +0.4
817,796 + GFF830 0.27 -0.1
817,796 + GFF830 0.27 -0.5
817,796 + GFF830 0.27 +0.8
817,796 + GFF830 0.27 +0.3
817,799 - GFF830 0.27 +0.8
817,804 - GFF830 0.27 +1.0
817,804 - GFF830 0.27 -1.9
817,804 - GFF830 0.27 +0.3
817,804 - GFF830 0.27 -0.8
817,804 - GFF830 0.27 -1.5
817,804 - GFF830 0.27 -0.4
817,806 + GFF830 0.27 -0.9
817,816 + GFF830 0.28 -0.8

Or see this region's nucleotide sequence