Strain Fitness in Sphingobium sp. HT1-2 around GFF817

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF816 and GFF817 are separated by 177 nucleotidesGFF817 and GFF818 are separated by 129 nucleotides GFF816 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 804,514 to 805,644 GFF816 GFF817 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 805,822 to 807,402 GFF817 GFF818 - Phosphoserine aminotransferase (EC 2.6.1.52), at 807,532 to 808,695 GFF818 Position (kb) 805 806 807 808Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 804.832 kb on + strand, within GFF816at 804.861 kb on + strand, within GFF816at 804.861 kb on + strand, within GFF816at 804.861 kb on + strand, within GFF816at 804.861 kb on + strand, within GFF816at 804.867 kb on + strand, within GFF816at 804.868 kb on + strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.869 kb on - strand, within GFF816at 804.876 kb on - strand, within GFF816at 804.933 kb on - strand, within GFF816at 804.938 kb on - strand, within GFF816at 804.948 kb on - strand, within GFF816at 804.960 kb on + strand, within GFF816at 804.968 kb on - strand, within GFF816at 804.988 kb on - strand, within GFF816at 804.993 kb on - strand, within GFF816at 804.998 kb on + strand, within GFF816at 805.093 kb on - strand, within GFF816at 805.144 kb on + strand, within GFF816at 805.145 kb on + strand, within GFF816at 805.148 kb on - strand, within GFF816at 805.148 kb on - strand, within GFF816at 805.148 kb on - strand, within GFF816at 805.151 kb on + strand, within GFF816at 805.283 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.322 kb on + strand, within GFF816at 805.330 kb on - strand, within GFF816at 805.354 kb on + strand, within GFF816at 805.371 kb on - strand, within GFF816at 805.376 kb on + strand, within GFF816at 805.384 kb on - strand, within GFF816at 805.439 kb on + strand, within GFF816at 805.444 kb on + strand, within GFF816at 805.444 kb on + strand, within GFF816at 805.474 kb on - strand, within GFF816at 805.479 kb on + strand, within GFF816at 805.479 kb on + strand, within GFF816at 805.487 kb on - strand, within GFF816at 805.488 kb on - strand, within GFF816at 805.493 kb on - strand, within GFF816at 805.519 kb on - strand, within GFF816at 805.536 kb on - strandat 805.542 kb on - strandat 805.542 kb on - strandat 805.576 kb on + strandat 805.585 kb on - strandat 805.617 kb on + strandat 805.631 kb on - strandat 805.646 kb on + strandat 805.685 kb on - strandat 805.717 kb on - strandat 805.717 kb on - strandat 805.727 kb on - strandat 805.727 kb on - strandat 805.744 kb on + strandat 805.749 kb on + strandat 805.765 kb on - strandat 805.767 kb on + strandat 805.779 kb on + strandat 805.779 kb on + strandat 805.785 kb on + strandat 805.831 kb on + strandat 805.837 kb on - strandat 805.838 kb on + strandat 805.864 kb on + strandat 805.872 kb on - strandat 805.874 kb on + strandat 805.879 kb on + strandat 805.961 kb on - strandat 805.997 kb on - strand, within GFF817at 805.997 kb on - strand, within GFF817at 806.036 kb on + strand, within GFF817at 806.083 kb on + strand, within GFF817at 806.083 kb on - strand, within GFF817at 806.098 kb on + strand, within GFF817at 806.103 kb on + strand, within GFF817at 806.108 kb on + strand, within GFF817at 806.110 kb on + strand, within GFF817at 806.111 kb on - strand, within GFF817at 806.116 kb on - strand, within GFF817at 806.116 kb on - strand, within GFF817at 806.281 kb on + strand, within GFF817at 806.290 kb on + strand, within GFF817at 806.298 kb on - strand, within GFF817at 806.338 kb on + strand, within GFF817at 806.375 kb on - strand, within GFF817at 806.406 kb on - strand, within GFF817at 806.426 kb on + strand, within GFF817at 806.457 kb on + strand, within GFF817at 806.534 kb on + strand, within GFF817at 806.534 kb on + strand, within GFF817at 806.542 kb on - strand, within GFF817at 806.576 kb on - strand, within GFF817at 806.635 kb on - strand, within GFF817at 807.076 kb on - strand, within GFF817at 807.130 kb on - strand, within GFF817at 807.413 kb on - strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.542 kb on + strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.550 kb on - strandat 807.554 kb on + strandat 807.599 kb on + strandat 807.709 kb on - strand, within GFF818at 807.712 kb on + strand, within GFF818at 807.734 kb on + strand, within GFF818at 807.738 kb on + strand, within GFF818at 807.783 kb on + strand, within GFF818at 807.809 kb on + strand, within GFF818at 807.817 kb on - strand, within GFF818at 807.880 kb on - strand, within GFF818at 807.949 kb on - strand, within GFF818at 807.949 kb on - strand, within GFF818at 807.961 kb on - strand, within GFF818at 807.989 kb on + strand, within GFF818at 807.989 kb on + strand, within GFF818at 807.997 kb on - strand, within GFF818at 807.997 kb on - strand, within GFF818at 807.997 kb on - strand, within GFF818at 808.067 kb on - strand, within GFF818at 808.117 kb on - strand, within GFF818at 808.138 kb on + strand, within GFF818at 808.138 kb on + strand, within GFF818at 808.142 kb on - strand, within GFF818at 808.146 kb on - strand, within GFF818at 808.146 kb on - strand, within GFF818at 808.146 kb on - strand, within GFF818at 808.176 kb on - strand, within GFF818at 808.319 kb on - strand, within GFF818at 808.330 kb on - strand, within GFF818at 808.330 kb on - strand, within GFF818at 808.340 kb on - strand, within GFF818

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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804,832 + GFF816 0.28 -1.3
804,861 + GFF816 0.31 -1.7
804,861 + GFF816 0.31 +0.1
804,861 + GFF816 0.31 -3.1
804,861 + GFF816 0.31 +0.5
804,867 + GFF816 0.31 -1.1
804,868 + GFF816 0.31 -2.3
804,869 - GFF816 0.31 -2.6
804,869 - GFF816 0.31 -2.1
804,869 - GFF816 0.31 -1.6
804,876 - GFF816 0.32 -2.0
804,933 - GFF816 0.37 +0.2
804,938 - GFF816 0.37 -2.7
804,948 - GFF816 0.38 -2.7
804,960 + GFF816 0.39 -0.5
804,968 - GFF816 0.40 -1.3
804,988 - GFF816 0.42 -2.4
804,993 - GFF816 0.42 -1.9
804,998 + GFF816 0.43 -3.8
805,093 - GFF816 0.51 -2.1
805,144 + GFF816 0.56 -2.0
805,145 + GFF816 0.56 -4.0
805,148 - GFF816 0.56 -0.3
805,148 - GFF816 0.56 -2.6
805,148 - GFF816 0.56 -1.0
805,151 + GFF816 0.56 -2.0
805,283 + GFF816 0.68 -1.8
805,322 + GFF816 0.71 -2.9
805,322 + GFF816 0.71 -1.0
805,322 + GFF816 0.71 -2.6
805,322 + GFF816 0.71 -2.8
805,322 + GFF816 0.71 -1.7
805,330 - GFF816 0.72 -1.6
805,354 + GFF816 0.74 -1.1
805,371 - GFF816 0.76 -1.0
805,376 + GFF816 0.76 -2.3
805,384 - GFF816 0.77 -2.7
805,439 + GFF816 0.82 -1.7
805,444 + GFF816 0.82 -1.8
805,444 + GFF816 0.82 -2.8
805,474 - GFF816 0.85 -1.5
805,479 + GFF816 0.85 -2.9
805,479 + GFF816 0.85 -1.1
805,487 - GFF816 0.86 -1.6
805,488 - GFF816 0.86 -0.3
805,493 - GFF816 0.87 -1.8
805,519 - GFF816 0.89 -2.1
805,536 - -1.9
805,542 - +0.5
805,542 - -0.3
805,576 + -2.8
805,585 - -0.8
805,617 + -2.5
805,631 - -3.9
805,646 + -0.7
805,685 - -1.3
805,717 - -2.9
805,717 - +1.2
805,727 - -1.1
805,727 - +0.4
805,744 + -0.2
805,749 + +2.3
805,765 - -1.8
805,767 + -0.8
805,779 + -0.4
805,779 + +0.6
805,785 + -0.2
805,831 + -3.0
805,837 - +0.0
805,838 + -0.1
805,864 + -1.6
805,872 - -0.4
805,874 + -1.1
805,879 + +0.3
805,961 - -1.4
805,997 - GFF817 0.11 +0.8
805,997 - GFF817 0.11 -0.4
806,036 + GFF817 0.14 -0.6
806,083 + GFF817 0.17 -0.5
806,083 - GFF817 0.17 -0.3
806,098 + GFF817 0.17 +0.3
806,103 + GFF817 0.18 -0.8
806,108 + GFF817 0.18 -0.5
806,110 + GFF817 0.18 -1.3
806,111 - GFF817 0.18 -0.2
806,116 - GFF817 0.19 +1.2
806,116 - GFF817 0.19 -2.2
806,281 + GFF817 0.29 -1.5
806,290 + GFF817 0.30 -0.3
806,298 - GFF817 0.30 -1.9
806,338 + GFF817 0.33 -0.9
806,375 - GFF817 0.35 -1.9
806,406 - GFF817 0.37 -1.0
806,426 + GFF817 0.38 -1.4
806,457 + GFF817 0.40 +0.4
806,534 + GFF817 0.45 +0.3
806,534 + GFF817 0.45 -1.0
806,542 - GFF817 0.46 -0.5
806,576 - GFF817 0.48 -0.8
806,635 - GFF817 0.51 +0.0
807,076 - GFF817 0.79 -1.0
807,130 - GFF817 0.83 -0.8
807,413 - +0.8
807,542 + -2.6
807,542 + +0.9
807,542 + -1.0
807,542 + -0.3
807,550 - -1.8
807,550 - +0.1
807,550 - -1.3
807,550 - -0.7
807,554 + +0.2
807,599 + -2.1
807,709 - GFF818 0.15 -1.4
807,712 + GFF818 0.15 -2.6
807,734 + GFF818 0.17 -1.5
807,738 + GFF818 0.18 -2.4
807,783 + GFF818 0.22 -1.5
807,809 + GFF818 0.24 -4.0
807,817 - GFF818 0.24 -0.8
807,880 - GFF818 0.30 -0.8
807,949 - GFF818 0.36 -1.3
807,949 - GFF818 0.36 -2.1
807,961 - GFF818 0.37 +0.0
807,989 + GFF818 0.39 -2.1
807,989 + GFF818 0.39 -0.7
807,997 - GFF818 0.40 -0.7
807,997 - GFF818 0.40 -3.7
807,997 - GFF818 0.40 -0.7
808,067 - GFF818 0.46 +0.3
808,117 - GFF818 0.50 -2.3
808,138 + GFF818 0.52 -0.7
808,138 + GFF818 0.52 -1.8
808,142 - GFF818 0.52 -0.5
808,146 - GFF818 0.53 -1.4
808,146 - GFF818 0.53 -1.9
808,146 - GFF818 0.53 -2.8
808,176 - GFF818 0.55 -0.3
808,319 - GFF818 0.68 -0.5
808,330 - GFF818 0.69 -1.4
808,330 - GFF818 0.69 -1.0
808,340 - GFF818 0.69 -2.5

Or see this region's nucleotide sequence