Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF802 and GFF803 are separated by 262 nucleotides GFF803 and GFF804 are separated by 27 nucleotides GFF804 and GFF805 overlap by 4 nucleotides
GFF802 - Sulfate permease, Trk-type, at 789,812 to 791,593
GFF802
GFF803 - Chorismate synthase (EC 4.2.3.5), at 791,856 to 792,929
GFF803
GFF804 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 792,957 to 793,763
GFF804
GFF805 - Ribonuclease BN, at 793,760 to 794,683
GFF805
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 790.857 kb on - strand, within GFF802 at 790.900 kb on + strand, within GFF802 at 790.937 kb on + strand, within GFF802 at 790.949 kb on + strand, within GFF802 at 790.996 kb on - strand, within GFF802 at 790.996 kb on - strand, within GFF802 at 791.013 kb on + strand, within GFF802 at 791.022 kb on + strand, within GFF802 at 791.023 kb on + strand, within GFF802 at 791.031 kb on - strand, within GFF802 at 791.054 kb on + strand, within GFF802 at 791.066 kb on - strand, within GFF802 at 791.093 kb on - strand, within GFF802 at 791.116 kb on + strand, within GFF802 at 791.116 kb on + strand, within GFF802 at 791.116 kb on + strand, within GFF802 at 791.116 kb on + strand, within GFF802 at 791.116 kb on + strand, within GFF802 at 791.116 kb on + strand, within GFF802 at 791.119 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.124 kb on - strand, within GFF802 at 791.140 kb on + strand, within GFF802 at 791.164 kb on + strand, within GFF802 at 791.189 kb on - strand, within GFF802 at 791.189 kb on - strand, within GFF802 at 791.196 kb on + strand, within GFF802 at 791.197 kb on + strand, within GFF802 at 791.197 kb on + strand, within GFF802 at 791.203 kb on + strand, within GFF802 at 791.224 kb on - strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.255 kb on + strand, within GFF802 at 791.263 kb on - strand, within GFF802 at 791.263 kb on - strand, within GFF802 at 791.263 kb on - strand, within GFF802 at 791.263 kb on - strand, within GFF802 at 791.263 kb on - strand, within GFF802 at 791.263 kb on - strand, within GFF802 at 791.263 kb on - strand, within GFF802 at 791.263 kb on - strand, within GFF802 at 791.263 kb on - strand, within GFF802 at 791.263 kb on - strand, within GFF802 at 791.263 kb on - strand, within GFF802 at 791.265 kb on - strand, within GFF802 at 791.277 kb on + strand, within GFF802 at 791.280 kb on - strand, within GFF802 at 791.280 kb on - strand, within GFF802 at 791.280 kb on - strand, within GFF802 at 791.280 kb on - strand, within GFF802 at 791.285 kb on - strand, within GFF802 at 791.285 kb on - strand, within GFF802 at 791.286 kb on + strand, within GFF802 at 791.350 kb on - strand, within GFF802 at 791.360 kb on - strand, within GFF802 at 791.455 kb on - strand at 791.526 kb on + strand at 791.582 kb on + strand at 791.657 kb on + strand at 791.664 kb on + strand at 791.664 kb on - strand at 791.674 kb on + strand at 791.741 kb on + strand at 791.741 kb on + strand at 791.741 kb on + strand at 791.741 kb on + strand at 791.741 kb on + strand at 791.741 kb on + strand at 791.741 kb on + strand at 791.742 kb on - strand at 791.744 kb on - strand at 791.749 kb on - strand at 791.749 kb on - strand at 791.749 kb on - strand at 791.749 kb on - strand at 791.749 kb on - strand at 791.749 kb on - strand at 791.749 kb on - strand at 791.749 kb on - strand at 791.799 kb on + strand at 791.830 kb on + strand at 791.856 kb on + strand at 791.863 kb on + strand at 791.863 kb on + strand at 791.863 kb on + strand at 791.863 kb on + strand at 791.863 kb on + strand at 791.871 kb on - strand at 791.871 kb on - strand at 791.871 kb on - strand at 791.871 kb on - strand at 791.871 kb on - strand at 791.871 kb on - strand at 791.871 kb on - strand at 791.871 kb on - strand at 791.880 kb on + strand at 791.880 kb on + strand at 791.880 kb on + strand at 791.880 kb on + strand at 791.881 kb on - strand at 791.888 kb on - strand at 791.888 kb on - strand at 791.888 kb on - strand at 791.907 kb on - strand at 791.965 kb on - strand, within GFF803 at 791.973 kb on + strand, within GFF803 at 792.018 kb on - strand, within GFF803 at 792.026 kb on + strand, within GFF803 at 792.034 kb on - strand, within GFF803 at 792.049 kb on - strand, within GFF803 at 792.049 kb on - strand, within GFF803 at 792.128 kb on - strand, within GFF803 at 792.208 kb on + strand, within GFF803 at 792.248 kb on - strand, within GFF803 at 792.252 kb on + strand, within GFF803 at 792.257 kb on + strand, within GFF803 at 792.257 kb on + strand, within GFF803 at 792.307 kb on + strand, within GFF803 at 792.362 kb on - strand, within GFF803 at 792.399 kb on - strand, within GFF803 at 792.468 kb on - strand, within GFF803 at 792.643 kb on + strand, within GFF803 at 792.655 kb on + strand, within GFF803 at 792.697 kb on + strand, within GFF803 at 792.702 kb on + strand, within GFF803 at 792.710 kb on - strand, within GFF803 at 792.710 kb on - strand, within GFF803 at 792.737 kb on + strand, within GFF803 at 792.760 kb on + strand, within GFF803 at 792.767 kb on + strand, within GFF803 at 792.768 kb on - strand, within GFF803 at 792.768 kb on - strand, within GFF803 at 792.791 kb on + strand, within GFF803 at 792.791 kb on + strand, within GFF803 at 792.791 kb on + strand, within GFF803 at 792.799 kb on - strand, within GFF803 at 792.799 kb on - strand, within GFF803 at 792.799 kb on - strand, within GFF803 at 792.804 kb on - strand, within GFF803 at 792.804 kb on - strand, within GFF803 at 792.804 kb on - strand, within GFF803 at 792.809 kb on - strand, within GFF803 at 792.839 kb on - strand at 792.843 kb on + strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.924 kb on + strand at 792.932 kb on - strand at 792.932 kb on - strand at 792.932 kb on - strand at 792.932 kb on - strand at 792.932 kb on - strand at 792.942 kb on - strand at 792.958 kb on + strand at 792.958 kb on + strand at 792.958 kb on + strand at 792.958 kb on + strand at 792.961 kb on - strand at 792.966 kb on - strand at 792.966 kb on - strand at 792.966 kb on - strand at 792.966 kb on - strand at 792.966 kb on - strand at 792.985 kb on + strand at 793.015 kb on - strand at 793.027 kb on + strand at 793.027 kb on + strand at 793.027 kb on + strand at 793.033 kb on + strand at 793.092 kb on - strand, within GFF804 at 793.273 kb on + strand, within GFF804 at 793.293 kb on - strand, within GFF804 at 793.293 kb on - strand, within GFF804 at 793.324 kb on + strand, within GFF804 at 793.343 kb on - strand, within GFF804 at 793.393 kb on + strand, within GFF804 at 793.395 kb on + strand, within GFF804 at 793.403 kb on - strand, within GFF804 at 793.456 kb on - strand, within GFF804 at 793.463 kb on + strand, within GFF804 at 793.488 kb on + strand, within GFF804 at 793.503 kb on - strand, within GFF804 at 793.522 kb on + strand, within GFF804 at 793.568 kb on - strand, within GFF804 at 793.587 kb on - strand, within GFF804 at 793.621 kb on + strand, within GFF804 at 793.629 kb on - strand, within GFF804 at 793.632 kb on + strand, within GFF804 at 793.635 kb on - strand, within GFF804 at 793.648 kb on + strand, within GFF804 at 793.651 kb on - strand, within GFF804 at 793.653 kb on + strand, within GFF804 at 793.658 kb on + strand, within GFF804 at 793.666 kb on - strand, within GFF804 at 793.695 kb on - strand at 793.757 kb on + strand at 793.767 kb on - strand at 793.784 kb on + strand at 793.787 kb on - strand at 793.787 kb on - strand at 793.792 kb on - strand at 793.792 kb on - strand at 793.792 kb on - strand at 793.797 kb on - strand at 793.899 kb on + strand, within GFF805 at 793.913 kb on + strand, within GFF805 at 793.919 kb on + strand, within GFF805 at 793.921 kb on - strand, within GFF805
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 790,857 - GFF802 0.59 +1.7 790,900 + GFF802 0.61 -2.2 790,937 + GFF802 0.63 -1.2 790,949 + GFF802 0.64 -0.8 790,996 - GFF802 0.66 -0.1 790,996 - GFF802 0.66 -1.0 791,013 + GFF802 0.67 -0.2 791,022 + GFF802 0.68 -0.4 791,023 + GFF802 0.68 +1.5 791,031 - GFF802 0.68 +1.0 791,054 + GFF802 0.70 +0.0 791,066 - GFF802 0.70 +0.3 791,093 - GFF802 0.72 +0.6 791,116 + GFF802 0.73 -1.6 791,116 + GFF802 0.73 -0.2 791,116 + GFF802 0.73 -0.1 791,116 + GFF802 0.73 -1.7 791,116 + GFF802 0.73 +0.6 791,116 + GFF802 0.73 -0.6 791,119 - GFF802 0.73 +1.7 791,124 - GFF802 0.74 +0.3 791,124 - GFF802 0.74 +0.9 791,124 - GFF802 0.74 -0.3 791,124 - GFF802 0.74 -0.1 791,124 - GFF802 0.74 -0.4 791,124 - GFF802 0.74 -1.0 791,124 - GFF802 0.74 +0.0 791,124 - GFF802 0.74 +0.2 791,124 - GFF802 0.74 -0.1 791,124 - GFF802 0.74 -2.4 791,124 - GFF802 0.74 -0.8 791,124 - GFF802 0.74 +0.6 791,124 - GFF802 0.74 +0.7 791,124 - GFF802 0.74 +1.0 791,124 - GFF802 0.74 +0.3 791,124 - GFF802 0.74 +0.5 791,140 + GFF802 0.75 +0.7 791,164 + GFF802 0.76 -2.2 791,189 - GFF802 0.77 -0.5 791,189 - GFF802 0.77 -0.3 791,196 + GFF802 0.78 -0.4 791,197 + GFF802 0.78 +0.1 791,197 + GFF802 0.78 +0.7 791,203 + GFF802 0.78 -0.2 791,224 - GFF802 0.79 +0.0 791,255 + GFF802 0.81 -0.3 791,255 + GFF802 0.81 -0.1 791,255 + GFF802 0.81 +0.5 791,255 + GFF802 0.81 -1.3 791,255 + GFF802 0.81 -0.6 791,255 + GFF802 0.81 -2.3 791,255 + GFF802 0.81 +1.8 791,255 + GFF802 0.81 -0.1 791,255 + GFF802 0.81 +0.3 791,255 + GFF802 0.81 +0.5 791,255 + GFF802 0.81 -1.6 791,255 + GFF802 0.81 -1.1 791,255 + GFF802 0.81 +0.1 791,263 - GFF802 0.81 -0.3 791,263 - GFF802 0.81 +2.3 791,263 - GFF802 0.81 +0.9 791,263 - GFF802 0.81 +0.3 791,263 - GFF802 0.81 +0.3 791,263 - GFF802 0.81 -0.6 791,263 - GFF802 0.81 -1.0 791,263 - GFF802 0.81 +0.2 791,263 - GFF802 0.81 -2.2 791,263 - GFF802 0.81 +0.0 791,263 - GFF802 0.81 -0.7 791,265 - GFF802 0.82 +0.6 791,277 + GFF802 0.82 -1.3 791,280 - GFF802 0.82 -0.2 791,280 - GFF802 0.82 -1.8 791,280 - GFF802 0.82 +0.6 791,280 - GFF802 0.82 +0.7 791,285 - GFF802 0.83 +0.4 791,285 - GFF802 0.83 -1.1 791,286 + GFF802 0.83 +0.3 791,350 - GFF802 0.86 -2.4 791,360 - GFF802 0.87 -0.6 791,455 - +0.0 791,526 + +0.9 791,582 + -0.4 791,657 + -2.2 791,664 + +0.7 791,664 - +0.5 791,674 + -0.8 791,741 + -0.2 791,741 + -0.5 791,741 + -0.4 791,741 + -0.8 791,741 + -0.3 791,741 + -0.2 791,741 + -2.3 791,742 - -1.6 791,744 - +2.1 791,749 - -0.3 791,749 - -1.4 791,749 - -0.8 791,749 - +0.3 791,749 - -1.3 791,749 - -2.4 791,749 - +1.1 791,749 - -0.2 791,799 + -0.8 791,830 + +0.4 791,856 + +0.3 791,863 + -0.8 791,863 + -2.3 791,863 + -2.3 791,863 + -0.7 791,863 + -1.6 791,871 - +2.6 791,871 - +0.9 791,871 - +0.2 791,871 - +0.1 791,871 - +1.0 791,871 - +0.4 791,871 - -1.7 791,871 - +0.5 791,880 + -1.6 791,880 + -0.8 791,880 + -1.0 791,880 + -2.4 791,881 - -2.3 791,888 - +0.3 791,888 - -0.7 791,888 - -0.8 791,907 - -2.6 791,965 - GFF803 0.10 -0.3 791,973 + GFF803 0.11 -1.6 792,018 - GFF803 0.15 -0.5 792,026 + GFF803 0.16 -2.5 792,034 - GFF803 0.17 +0.0 792,049 - GFF803 0.18 -1.7 792,049 - GFF803 0.18 -1.1 792,128 - GFF803 0.25 -2.0 792,208 + GFF803 0.33 -1.3 792,248 - GFF803 0.36 -0.5 792,252 + GFF803 0.37 -1.5 792,257 + GFF803 0.37 -0.3 792,257 + GFF803 0.37 -0.7 792,307 + GFF803 0.42 -0.1 792,362 - GFF803 0.47 -0.1 792,399 - GFF803 0.51 +0.0 792,468 - GFF803 0.57 -0.8 792,643 + GFF803 0.73 -1.3 792,655 + GFF803 0.74 -0.7 792,697 + GFF803 0.78 -1.7 792,702 + GFF803 0.79 +0.3 792,710 - GFF803 0.80 +0.3 792,710 - GFF803 0.80 +0.7 792,737 + GFF803 0.82 -2.8 792,760 + GFF803 0.84 -0.5 792,767 + GFF803 0.85 -0.3 792,768 - GFF803 0.85 +0.3 792,768 - GFF803 0.85 -2.5 792,791 + GFF803 0.87 -1.6 792,791 + GFF803 0.87 -1.1 792,791 + GFF803 0.87 -1.8 792,799 - GFF803 0.88 -2.3 792,799 - GFF803 0.88 -0.5 792,799 - GFF803 0.88 +1.2 792,804 - GFF803 0.88 +0.3 792,804 - GFF803 0.88 +0.5 792,804 - GFF803 0.88 -1.7 792,809 - GFF803 0.89 -2.2 792,839 - +0.2 792,843 + +1.3 792,924 + -1.7 792,924 + +0.1 792,924 + +0.1 792,924 + +0.5 792,924 + +0.6 792,924 + -1.1 792,932 - +0.1 792,932 - -0.1 792,932 - +0.6 792,932 - -0.1 792,932 - -2.0 792,942 - -1.1 792,958 + +0.5 792,958 + -1.1 792,958 + -0.5 792,958 + +0.0 792,961 - -0.5 792,966 - -0.2 792,966 - -0.8 792,966 - -0.3 792,966 - -0.4 792,966 - -0.1 792,985 + -1.1 793,015 - -0.5 793,027 + -1.0 793,027 + -0.6 793,027 + +1.3 793,033 + +1.7 793,092 - GFF804 0.17 -0.7 793,273 + GFF804 0.39 +0.2 793,293 - GFF804 0.42 -0.4 793,293 - GFF804 0.42 +1.2 793,324 + GFF804 0.45 +0.3 793,343 - GFF804 0.48 -0.5 793,393 + GFF804 0.54 -0.5 793,395 + GFF804 0.54 -2.1 793,403 - GFF804 0.55 -0.9 793,456 - GFF804 0.62 -1.0 793,463 + GFF804 0.63 -1.0 793,488 + GFF804 0.66 +0.0 793,503 - GFF804 0.68 +0.0 793,522 + GFF804 0.70 -0.9 793,568 - GFF804 0.76 -1.5 793,587 - GFF804 0.78 +0.5 793,621 + GFF804 0.82 -2.1 793,629 - GFF804 0.83 -1.9 793,632 + GFF804 0.84 -0.7 793,635 - GFF804 0.84 -1.2 793,648 + GFF804 0.86 +0.3 793,651 - GFF804 0.86 +1.3 793,653 + GFF804 0.86 -2.0 793,658 + GFF804 0.87 -2.7 793,666 - GFF804 0.88 -0.1 793,695 - -1.0 793,757 + +0.0 793,767 - -2.3 793,784 + -0.5 793,787 - +0.5 793,787 - -0.8 793,792 - +0.2 793,792 - -1.6 793,792 - +0.7 793,797 - +0.2 793,899 + GFF805 0.15 +1.6 793,913 + GFF805 0.17 -0.7 793,919 + GFF805 0.17 +0.7 793,921 - GFF805 0.17 -0.7
Or see this region's nucleotide sequence