Strain Fitness in Sphingobium sp. HT1-2 around GFF784

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF782 and GFF783 are separated by 87 nucleotidesGFF783 and GFF784 are separated by 156 nucleotidesGFF784 and GFF785 are separated by 13 nucleotides GFF782 - TldD protein, part of TldE/TldD proteolytic complex, at 770,859 to 772,301 GFF782 GFF783 - protein of unknown function DUF924, at 772,389 to 772,964 GFF783 GFF784 - Nitrogen regulatory protein P-II, GlnK, at 773,121 to 773,459 GFF784 GFF785 - Ammonium transporter, at 773,473 to 774,819 GFF785 Position (kb) 773 774Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 772.131 kb on - strand, within GFF782at 772.131 kb on - strand, within GFF782at 772.157 kb on + strandat 772.165 kb on - strandat 772.165 kb on - strandat 772.165 kb on - strandat 772.165 kb on - strandat 772.176 kb on + strandat 772.184 kb on - strandat 772.214 kb on + strandat 772.218 kb on - strandat 772.222 kb on - strandat 772.229 kb on - strandat 772.229 kb on - strandat 772.270 kb on - strandat 772.281 kb on - strandat 772.349 kb on + strandat 772.415 kb on + strandat 772.440 kb on + strandat 772.464 kb on - strand, within GFF783at 772.479 kb on + strand, within GFF783at 772.487 kb on - strand, within GFF783at 772.487 kb on - strand, within GFF783at 772.497 kb on - strand, within GFF783at 772.497 kb on - strand, within GFF783at 772.497 kb on - strand, within GFF783at 772.511 kb on + strand, within GFF783at 772.519 kb on - strand, within GFF783at 772.524 kb on - strand, within GFF783at 772.588 kb on + strand, within GFF783at 772.613 kb on - strand, within GFF783at 772.627 kb on + strand, within GFF783at 772.645 kb on + strand, within GFF783at 772.649 kb on + strand, within GFF783at 772.649 kb on + strand, within GFF783at 772.650 kb on + strand, within GFF783at 772.650 kb on + strand, within GFF783at 772.650 kb on + strand, within GFF783at 772.658 kb on - strand, within GFF783at 772.704 kb on + strand, within GFF783at 772.709 kb on + strand, within GFF783at 772.709 kb on + strand, within GFF783at 772.717 kb on - strand, within GFF783at 772.732 kb on - strand, within GFF783at 772.771 kb on + strand, within GFF783at 772.806 kb on - strand, within GFF783at 772.882 kb on + strand, within GFF783at 772.892 kb on + strand, within GFF783at 772.902 kb on + strand, within GFF783at 772.910 kb on - strandat 772.910 kb on - strandat 772.920 kb on - strandat 772.958 kb on - strandat 772.961 kb on - strandat 773.129 kb on + strandat 773.163 kb on - strand, within GFF784at 773.208 kb on - strand, within GFF784at 773.225 kb on - strand, within GFF784at 773.242 kb on - strand, within GFF784at 773.249 kb on - strand, within GFF784at 773.416 kb on - strand, within GFF784at 773.426 kb on - strandat 773.431 kb on - strandat 773.471 kb on - strandat 773.518 kb on - strandat 773.544 kb on - strandat 773.554 kb on - strandat 773.554 kb on - strandat 773.561 kb on - strandat 773.575 kb on + strandat 773.575 kb on + strandat 773.585 kb on + strandat 773.586 kb on + strandat 773.596 kb on + strandat 773.596 kb on + strandat 773.609 kb on + strand, within GFF785at 773.650 kb on + strand, within GFF785at 773.653 kb on - strand, within GFF785at 773.653 kb on - strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.655 kb on + strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.663 kb on - strand, within GFF785at 773.666 kb on + strand, within GFF785at 773.674 kb on - strand, within GFF785at 773.691 kb on + strand, within GFF785at 773.693 kb on - strand, within GFF785at 773.706 kb on + strand, within GFF785at 773.731 kb on + strand, within GFF785at 773.736 kb on + strand, within GFF785at 773.739 kb on - strand, within GFF785at 773.744 kb on - strand, within GFF785at 773.744 kb on - strand, within GFF785at 773.744 kb on - strand, within GFF785at 773.744 kb on - strand, within GFF785at 773.746 kb on + strand, within GFF785at 773.746 kb on + strand, within GFF785at 773.754 kb on - strand, within GFF785at 773.754 kb on - strand, within GFF785at 773.754 kb on - strand, within GFF785at 773.764 kb on - strand, within GFF785at 773.776 kb on + strand, within GFF785at 773.783 kb on - strand, within GFF785at 773.784 kb on - strand, within GFF785at 773.793 kb on + strand, within GFF785at 773.793 kb on + strand, within GFF785at 773.801 kb on - strand, within GFF785at 773.801 kb on - strand, within GFF785at 773.817 kb on - strand, within GFF785at 773.841 kb on - strand, within GFF785at 773.868 kb on - strand, within GFF785at 773.893 kb on + strand, within GFF785at 773.893 kb on + strand, within GFF785at 773.893 kb on + strand, within GFF785at 773.893 kb on + strand, within GFF785at 773.935 kb on + strand, within GFF785at 773.938 kb on - strand, within GFF785at 773.938 kb on - strand, within GFF785at 773.938 kb on - strand, within GFF785at 773.941 kb on + strand, within GFF785at 773.944 kb on - strand, within GFF785at 773.949 kb on - strand, within GFF785at 773.949 kb on - strand, within GFF785at 773.949 kb on - strand, within GFF785at 773.951 kb on + strand, within GFF785at 773.954 kb on - strand, within GFF785at 773.980 kb on + strand, within GFF785at 773.981 kb on + strand, within GFF785at 774.003 kb on + strand, within GFF785at 774.103 kb on - strand, within GFF785at 774.108 kb on - strand, within GFF785at 774.129 kb on + strand, within GFF785at 774.137 kb on + strand, within GFF785at 774.137 kb on + strand, within GFF785at 774.137 kb on + strand, within GFF785at 774.137 kb on + strand, within GFF785at 774.137 kb on + strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.145 kb on - strand, within GFF785at 774.147 kb on + strand, within GFF785at 774.165 kb on + strand, within GFF785at 774.176 kb on + strand, within GFF785at 774.181 kb on + strand, within GFF785at 774.191 kb on + strand, within GFF785at 774.191 kb on + strand, within GFF785at 774.191 kb on + strand, within GFF785at 774.191 kb on + strand, within GFF785at 774.199 kb on - strand, within GFF785at 774.199 kb on - strand, within GFF785at 774.199 kb on - strand, within GFF785at 774.199 kb on - strand, within GFF785at 774.220 kb on + strand, within GFF785at 774.220 kb on - strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.222 kb on + strand, within GFF785at 774.225 kb on - strand, within GFF785at 774.227 kb on + strand, within GFF785at 774.230 kb on - strand, within GFF785at 774.230 kb on - strand, within GFF785at 774.230 kb on - strand, within GFF785at 774.261 kb on + strand, within GFF785at 774.295 kb on + strand, within GFF785at 774.295 kb on + strand, within GFF785at 774.302 kb on - strand, within GFF785at 774.302 kb on - strand, within GFF785at 774.303 kb on - strand, within GFF785at 774.330 kb on + strand, within GFF785at 774.330 kb on + strand, within GFF785at 774.330 kb on + strand, within GFF785at 774.332 kb on + strand, within GFF785at 774.338 kb on - strand, within GFF785at 774.338 kb on - strand, within GFF785at 774.338 kb on - strand, within GFF785at 774.340 kb on - strand, within GFF785at 774.351 kb on + strand, within GFF785at 774.373 kb on + strand, within GFF785at 774.381 kb on - strand, within GFF785at 774.386 kb on + strand, within GFF785

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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772,131 - GFF782 0.88 -0.3
772,131 - GFF782 0.88 +0.9
772,157 + +0.9
772,165 - +0.1
772,165 - -0.4
772,165 - -2.3
772,165 - -0.8
772,176 + -0.1
772,184 - +0.1
772,214 + -2.3
772,218 - +1.1
772,222 - -0.3
772,229 - +2.6
772,229 - -0.5
772,270 - -0.7
772,281 - +0.1
772,349 + -1.3
772,415 + +1.7
772,440 + -0.5
772,464 - GFF783 0.13 -0.5
772,479 + GFF783 0.16 -1.4
772,487 - GFF783 0.17 -0.3
772,487 - GFF783 0.17 +2.1
772,497 - GFF783 0.19 +1.3
772,497 - GFF783 0.19 +1.2
772,497 - GFF783 0.19 -0.4
772,511 + GFF783 0.21 +1.5
772,519 - GFF783 0.23 +0.8
772,524 - GFF783 0.23 -0.3
772,588 + GFF783 0.35 +0.3
772,613 - GFF783 0.39 +0.1
772,627 + GFF783 0.41 +0.0
772,645 + GFF783 0.44 +1.2
772,649 + GFF783 0.45 +0.5
772,649 + GFF783 0.45 -1.3
772,650 + GFF783 0.45 +0.5
772,650 + GFF783 0.45 +0.7
772,650 + GFF783 0.45 +0.7
772,658 - GFF783 0.47 -1.8
772,704 + GFF783 0.55 +0.2
772,709 + GFF783 0.56 +3.6
772,709 + GFF783 0.56 +0.5
772,717 - GFF783 0.57 +1.3
772,732 - GFF783 0.60 +0.3
772,771 + GFF783 0.66 +0.4
772,806 - GFF783 0.72 +0.0
772,882 + GFF783 0.86 +0.3
772,892 + GFF783 0.87 +0.2
772,902 + GFF783 0.89 -1.2
772,910 - -2.5
772,910 - +0.8
772,920 - -0.3
772,958 - +0.3
772,961 - -0.2
773,129 + -1.6
773,163 - GFF784 0.12 -3.0
773,208 - GFF784 0.26 -1.5
773,225 - GFF784 0.31 -1.9
773,242 - GFF784 0.36 -1.3
773,249 - GFF784 0.38 -3.3
773,416 - GFF784 0.87 -0.4
773,426 - -2.1
773,431 - -3.1
773,471 - -1.4
773,518 - -3.0
773,544 - -3.6
773,554 - -1.7
773,554 - -2.5
773,561 - -1.3
773,575 + -3.6
773,575 + -1.7
773,585 + -2.8
773,586 + -1.5
773,596 + -1.8
773,596 + -1.3
773,609 + GFF785 0.10 -2.0
773,650 + GFF785 0.13 -1.8
773,653 - GFF785 0.13 -1.5
773,653 - GFF785 0.13 -2.4
773,655 + GFF785 0.14 -3.3
773,655 + GFF785 0.14 -1.7
773,655 + GFF785 0.14 -4.0
773,655 + GFF785 0.14 -1.7
773,655 + GFF785 0.14 -2.3
773,655 + GFF785 0.14 -1.0
773,655 + GFF785 0.14 -3.2
773,655 + GFF785 0.14 -2.5
773,663 - GFF785 0.14 -2.7
773,663 - GFF785 0.14 -1.6
773,663 - GFF785 0.14 -3.6
773,663 - GFF785 0.14 -2.8
773,663 - GFF785 0.14 -3.9
773,663 - GFF785 0.14 -1.7
773,663 - GFF785 0.14 -1.8
773,663 - GFF785 0.14 -4.0
773,663 - GFF785 0.14 -3.0
773,663 - GFF785 0.14 -3.7
773,663 - GFF785 0.14 -1.5
773,666 + GFF785 0.14 -0.1
773,674 - GFF785 0.15 -1.4
773,691 + GFF785 0.16 -2.3
773,693 - GFF785 0.16 -2.8
773,706 + GFF785 0.17 -2.7
773,731 + GFF785 0.19 -2.8
773,736 + GFF785 0.20 -2.7
773,739 - GFF785 0.20 -2.7
773,744 - GFF785 0.20 -3.3
773,744 - GFF785 0.20 -0.7
773,744 - GFF785 0.20 -3.5
773,744 - GFF785 0.20 -3.6
773,746 + GFF785 0.20 -2.1
773,746 + GFF785 0.20 -3.2
773,754 - GFF785 0.21 -0.9
773,754 - GFF785 0.21 -2.4
773,754 - GFF785 0.21 -3.2
773,764 - GFF785 0.22 -0.8
773,776 + GFF785 0.22 -1.3
773,783 - GFF785 0.23 -2.1
773,784 - GFF785 0.23 -3.3
773,793 + GFF785 0.24 -3.3
773,793 + GFF785 0.24 -3.3
773,801 - GFF785 0.24 -2.2
773,801 - GFF785 0.24 -2.3
773,817 - GFF785 0.26 -2.9
773,841 - GFF785 0.27 -1.8
773,868 - GFF785 0.29 -1.8
773,893 + GFF785 0.31 -1.7
773,893 + GFF785 0.31 -1.3
773,893 + GFF785 0.31 -1.1
773,893 + GFF785 0.31 -1.3
773,935 + GFF785 0.34 -1.9
773,938 - GFF785 0.35 -2.1
773,938 - GFF785 0.35 -4.1
773,938 - GFF785 0.35 -0.9
773,941 + GFF785 0.35 -2.6
773,944 - GFF785 0.35 -1.1
773,949 - GFF785 0.35 -3.6
773,949 - GFF785 0.35 -1.4
773,949 - GFF785 0.35 -2.5
773,951 + GFF785 0.35 -2.3
773,954 - GFF785 0.36 -0.6
773,980 + GFF785 0.38 -3.4
773,981 + GFF785 0.38 -1.6
774,003 + GFF785 0.39 -3.0
774,103 - GFF785 0.47 -2.6
774,108 - GFF785 0.47 -1.8
774,129 + GFF785 0.49 -1.1
774,137 + GFF785 0.49 -4.0
774,137 + GFF785 0.49 -3.9
774,137 + GFF785 0.49 -2.1
774,137 + GFF785 0.49 -3.1
774,137 + GFF785 0.49 -1.6
774,145 - GFF785 0.50 -0.8
774,145 - GFF785 0.50 -1.8
774,145 - GFF785 0.50 -0.7
774,145 - GFF785 0.50 -4.0
774,145 - GFF785 0.50 -2.3
774,145 - GFF785 0.50 -2.7
774,145 - GFF785 0.50 -2.3
774,145 - GFF785 0.50 -2.1
774,147 + GFF785 0.50 -4.1
774,165 + GFF785 0.51 -2.6
774,176 + GFF785 0.52 -0.9
774,181 + GFF785 0.53 -1.5
774,191 + GFF785 0.53 -3.4
774,191 + GFF785 0.53 -2.9
774,191 + GFF785 0.53 -1.5
774,191 + GFF785 0.53 -2.9
774,199 - GFF785 0.54 -1.8
774,199 - GFF785 0.54 -1.7
774,199 - GFF785 0.54 -2.8
774,199 - GFF785 0.54 -2.0
774,220 + GFF785 0.55 -2.1
774,220 - GFF785 0.55 -1.9
774,222 + GFF785 0.56 -1.8
774,222 + GFF785 0.56 -1.0
774,222 + GFF785 0.56 -2.4
774,222 + GFF785 0.56 -0.8
774,222 + GFF785 0.56 -2.9
774,222 + GFF785 0.56 -0.3
774,225 - GFF785 0.56 -1.0
774,227 + GFF785 0.56 -2.6
774,230 - GFF785 0.56 -2.4
774,230 - GFF785 0.56 -2.2
774,230 - GFF785 0.56 -3.3
774,261 + GFF785 0.59 -2.1
774,295 + GFF785 0.61 -1.9
774,295 + GFF785 0.61 -2.3
774,302 - GFF785 0.62 -1.2
774,302 - GFF785 0.62 -1.4
774,303 - GFF785 0.62 -3.0
774,330 + GFF785 0.64 -2.6
774,330 + GFF785 0.64 -1.8
774,330 + GFF785 0.64 -3.4
774,332 + GFF785 0.64 +0.2
774,338 - GFF785 0.64 -3.7
774,338 - GFF785 0.64 -2.6
774,338 - GFF785 0.64 -2.8
774,340 - GFF785 0.64 -3.6
774,351 + GFF785 0.65 -3.4
774,373 + GFF785 0.67 -1.3
774,381 - GFF785 0.67 -2.6
774,386 + GFF785 0.68 -2.9

Or see this region's nucleotide sequence