Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF774 and GFF775 are separated by 110 nucleotides GFF775 and GFF776 are separated by 45 nucleotides GFF776 and GFF777 are separated by 207 nucleotides
GFF774 - Arylsulfatase (EC 3.1.6.1), at 763,645 to 765,279
GFF774
GFF775 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 765,390 to 766,217
GFF775
GFF776 - RNA polymerase sigma-54 factor RpoN, at 766,263 to 767,780
GFF776
GFF777 - D-alanine aminotransferase (EC 2.6.1.21), at 767,988 to 768,839
GFF777
Position (kb) 766
767
768 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 765.268 kb on + strand at 765.364 kb on + strand at 765.421 kb on + strand at 765.429 kb on + strand at 765.447 kb on + strand at 765.452 kb on + strand at 765.452 kb on + strand at 765.452 kb on + strand at 765.460 kb on - strand at 766.211 kb on + strand at 766.219 kb on - strand at 766.219 kb on - strand at 766.243 kb on + strand at 766.270 kb on - strand at 766.278 kb on + strand at 766.278 kb on + strand at 766.280 kb on + strand at 766.299 kb on - strand at 766.325 kb on + strand at 766.351 kb on - strand at 766.360 kb on - strand at 766.360 kb on - strand at 766.397 kb on - strand at 766.406 kb on + strand at 766.433 kb on - strand, within GFF776 at 766.457 kb on - strand, within GFF776 at 766.464 kb on - strand, within GFF776 at 766.516 kb on + strand, within GFF776 at 766.521 kb on + strand, within GFF776 at 766.521 kb on + strand, within GFF776 at 766.521 kb on + strand, within GFF776 at 766.549 kb on + strand, within GFF776 at 766.583 kb on - strand, within GFF776 at 766.615 kb on + strand, within GFF776 at 766.615 kb on + strand, within GFF776 at 766.615 kb on + strand, within GFF776 at 766.615 kb on + strand, within GFF776 at 766.615 kb on + strand, within GFF776 at 766.615 kb on + strand, within GFF776 at 766.615 kb on + strand, within GFF776 at 766.615 kb on - strand, within GFF776 at 766.623 kb on - strand, within GFF776 at 766.623 kb on - strand, within GFF776 at 766.623 kb on - strand, within GFF776 at 766.623 kb on - strand, within GFF776 at 766.623 kb on - strand, within GFF776 at 766.659 kb on - strand, within GFF776 at 766.676 kb on - strand, within GFF776 at 766.690 kb on - strand, within GFF776 at 766.690 kb on - strand, within GFF776 at 766.695 kb on - strand, within GFF776 at 766.710 kb on + strand, within GFF776 at 766.727 kb on - strand, within GFF776 at 766.732 kb on - strand, within GFF776 at 766.737 kb on + strand, within GFF776 at 766.737 kb on + strand, within GFF776 at 766.747 kb on - strand, within GFF776 at 766.749 kb on + strand, within GFF776 at 766.749 kb on + strand, within GFF776 at 766.754 kb on + strand, within GFF776 at 766.754 kb on + strand, within GFF776 at 766.781 kb on + strand, within GFF776 at 766.781 kb on + strand, within GFF776 at 766.789 kb on - strand, within GFF776 at 766.789 kb on - strand, within GFF776 at 766.814 kb on + strand, within GFF776 at 766.814 kb on + strand, within GFF776 at 766.825 kb on + strand, within GFF776 at 766.825 kb on + strand, within GFF776 at 766.825 kb on + strand, within GFF776 at 766.830 kb on + strand, within GFF776 at 766.833 kb on - strand, within GFF776 at 766.833 kb on - strand, within GFF776 at 766.833 kb on - strand, within GFF776 at 766.833 kb on - strand, within GFF776 at 766.833 kb on - strand, within GFF776 at 766.833 kb on - strand, within GFF776 at 766.833 kb on - strand, within GFF776 at 766.838 kb on - strand, within GFF776 at 766.838 kb on - strand, within GFF776 at 766.847 kb on + strand, within GFF776 at 766.847 kb on + strand, within GFF776 at 766.847 kb on + strand, within GFF776 at 766.847 kb on + strand, within GFF776 at 766.847 kb on - strand, within GFF776 at 766.849 kb on + strand, within GFF776 at 766.853 kb on + strand, within GFF776 at 766.861 kb on - strand, within GFF776 at 766.880 kb on - strand, within GFF776 at 766.882 kb on + strand, within GFF776 at 766.882 kb on + strand, within GFF776 at 766.924 kb on + strand, within GFF776 at 766.937 kb on + strand, within GFF776 at 767.008 kb on - strand, within GFF776 at 767.008 kb on - strand, within GFF776 at 767.023 kb on - strand, within GFF776 at 767.023 kb on - strand, within GFF776 at 767.047 kb on + strand, within GFF776 at 767.059 kb on - strand, within GFF776 at 767.083 kb on + strand, within GFF776 at 767.103 kb on - strand, within GFF776 at 767.103 kb on - strand, within GFF776 at 767.130 kb on - strand, within GFF776 at 767.132 kb on + strand, within GFF776 at 767.132 kb on + strand, within GFF776 at 767.132 kb on + strand, within GFF776 at 767.132 kb on + strand, within GFF776 at 767.137 kb on + strand, within GFF776 at 767.137 kb on + strand, within GFF776 at 767.137 kb on + strand, within GFF776 at 767.137 kb on + strand, within GFF776 at 767.137 kb on + strand, within GFF776 at 767.140 kb on - strand, within GFF776 at 767.140 kb on - strand, within GFF776 at 767.145 kb on - strand, within GFF776 at 767.163 kb on + strand, within GFF776 at 767.163 kb on + strand, within GFF776 at 767.169 kb on + strand, within GFF776 at 767.169 kb on + strand, within GFF776 at 767.169 kb on + strand, within GFF776 at 767.171 kb on - strand, within GFF776 at 767.174 kb on + strand, within GFF776 at 767.177 kb on - strand, within GFF776 at 767.177 kb on - strand, within GFF776 at 767.177 kb on - strand, within GFF776 at 767.181 kb on + strand, within GFF776 at 767.183 kb on + strand, within GFF776 at 767.183 kb on + strand, within GFF776 at 767.184 kb on - strand, within GFF776 at 767.189 kb on - strand, within GFF776 at 767.189 kb on - strand, within GFF776 at 767.191 kb on + strand, within GFF776 at 767.191 kb on + strand, within GFF776 at 767.194 kb on - strand, within GFF776 at 767.199 kb on - strand, within GFF776 at 767.250 kb on + strand, within GFF776 at 767.250 kb on + strand, within GFF776 at 767.252 kb on + strand, within GFF776 at 767.255 kb on + strand, within GFF776 at 767.255 kb on + strand, within GFF776 at 767.263 kb on - strand, within GFF776 at 767.273 kb on - strand, within GFF776 at 767.277 kb on - strand, within GFF776 at 767.305 kb on + strand, within GFF776 at 767.350 kb on - strand, within GFF776 at 767.514 kb on - strand, within GFF776 at 767.514 kb on - strand, within GFF776 at 767.568 kb on + strand, within GFF776 at 767.596 kb on - strand, within GFF776 at 767.597 kb on - strand, within GFF776 at 767.606 kb on + strand, within GFF776 at 767.611 kb on + strand, within GFF776 at 767.611 kb on + strand, within GFF776 at 767.616 kb on + strand, within GFF776 at 767.630 kb on - strand at 767.649 kb on + strand at 767.672 kb on + strand at 767.680 kb on - strand at 767.681 kb on - strand at 767.785 kb on + strand at 767.785 kb on + strand at 767.785 kb on + strand at 767.793 kb on - strand at 767.793 kb on - strand at 767.824 kb on + strand at 767.824 kb on + strand at 767.825 kb on + strand at 767.843 kb on + strand at 767.843 kb on + strand at 767.843 kb on + strand at 767.843 kb on + strand at 767.843 kb on + strand at 767.843 kb on + strand at 767.843 kb on + strand at 767.843 kb on + strand at 767.851 kb on - strand at 767.851 kb on - strand at 767.851 kb on - strand at 767.851 kb on - strand at 767.851 kb on - strand at 767.851 kb on - strand at 767.851 kb on - strand at 767.889 kb on + strand at 767.926 kb on - strand at 767.926 kb on - strand at 767.926 kb on - strand at 767.979 kb on + strand at 768.023 kb on + strand at 768.149 kb on + strand, within GFF777 at 768.167 kb on - strand, within GFF777 at 768.184 kb on + strand, within GFF777 at 768.202 kb on - strand, within GFF777 at 768.212 kb on - strand, within GFF777 at 768.218 kb on + strand, within GFF777 at 768.234 kb on - strand, within GFF777 at 768.240 kb on - strand, within GFF777 at 768.243 kb on + strand, within GFF777 at 768.243 kb on + strand, within GFF777 at 768.243 kb on + strand, within GFF777 at 768.321 kb on - strand, within GFF777 at 768.323 kb on + strand, within GFF777 at 768.323 kb on + strand, within GFF777 at 768.331 kb on - strand, within GFF777 at 768.331 kb on - strand, within GFF777 at 768.331 kb on - strand, within GFF777 at 768.331 kb on - strand, within GFF777 at 768.338 kb on + strand, within GFF777 at 768.346 kb on - strand, within GFF777 at 768.379 kb on - strand, within GFF777 at 768.384 kb on - strand, within GFF777 at 768.384 kb on - strand, within GFF777 at 768.392 kb on - strand, within GFF777 at 768.399 kb on + strand, within GFF777 at 768.430 kb on + strand, within GFF777 at 768.430 kb on + strand, within GFF777 at 768.438 kb on - strand, within GFF777 at 768.438 kb on - strand, within GFF777 at 768.463 kb on - strand, within GFF777 at 768.486 kb on + strand, within GFF777 at 768.561 kb on + strand, within GFF777 at 768.591 kb on + strand, within GFF777 at 768.591 kb on + strand, within GFF777 at 768.648 kb on + strand, within GFF777 at 768.710 kb on - strand, within GFF777 at 768.759 kb on + strand at 768.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 765,268 + -2.0 765,364 + -2.6 765,421 + +0.9 765,429 + +0.1 765,447 + +0.5 765,452 + +0.6 765,452 + +1.4 765,452 + +2.6 765,460 - -0.3 766,211 + -0.5 766,219 - +0.2 766,219 - -0.9 766,243 + -2.3 766,270 - +1.3 766,278 + +1.2 766,278 + -0.1 766,280 + -0.3 766,299 - -2.9 766,325 + -1.4 766,351 - -1.8 766,360 - -1.9 766,360 - -2.1 766,397 - -2.0 766,406 + -2.5 766,433 - GFF776 0.11 -2.6 766,457 - GFF776 0.13 -1.4 766,464 - GFF776 0.13 +0.1 766,516 + GFF776 0.17 -2.1 766,521 + GFF776 0.17 -1.0 766,521 + GFF776 0.17 -2.2 766,521 + GFF776 0.17 -2.4 766,549 + GFF776 0.19 -3.4 766,583 - GFF776 0.21 -1.0 766,615 + GFF776 0.23 +0.3 766,615 + GFF776 0.23 -1.3 766,615 + GFF776 0.23 -0.5 766,615 + GFF776 0.23 -1.5 766,615 + GFF776 0.23 -3.0 766,615 + GFF776 0.23 -2.7 766,615 + GFF776 0.23 -0.4 766,615 - GFF776 0.23 -1.6 766,623 - GFF776 0.24 -3.9 766,623 - GFF776 0.24 -2.9 766,623 - GFF776 0.24 -0.3 766,623 - GFF776 0.24 -1.8 766,623 - GFF776 0.24 -2.8 766,659 - GFF776 0.26 +0.0 766,676 - GFF776 0.27 -2.0 766,690 - GFF776 0.28 -2.4 766,690 - GFF776 0.28 +0.9 766,695 - GFF776 0.28 -2.3 766,710 + GFF776 0.29 -3.2 766,727 - GFF776 0.31 -1.1 766,732 - GFF776 0.31 -1.3 766,737 + GFF776 0.31 -2.4 766,737 + GFF776 0.31 -3.5 766,747 - GFF776 0.32 -2.2 766,749 + GFF776 0.32 -1.8 766,749 + GFF776 0.32 -0.3 766,754 + GFF776 0.32 -2.1 766,754 + GFF776 0.32 -3.2 766,781 + GFF776 0.34 -2.1 766,781 + GFF776 0.34 -2.1 766,789 - GFF776 0.35 -2.1 766,789 - GFF776 0.35 -1.6 766,814 + GFF776 0.36 -2.2 766,814 + GFF776 0.36 -2.8 766,825 + GFF776 0.37 -2.8 766,825 + GFF776 0.37 -1.5 766,825 + GFF776 0.37 -2.6 766,830 + GFF776 0.37 -3.0 766,833 - GFF776 0.38 -1.8 766,833 - GFF776 0.38 -0.6 766,833 - GFF776 0.38 -2.4 766,833 - GFF776 0.38 -1.2 766,833 - GFF776 0.38 -2.6 766,833 - GFF776 0.38 -3.6 766,833 - GFF776 0.38 -1.8 766,838 - GFF776 0.38 -2.5 766,838 - GFF776 0.38 -2.4 766,847 + GFF776 0.38 -2.1 766,847 + GFF776 0.38 +0.0 766,847 + GFF776 0.38 -1.0 766,847 + GFF776 0.38 -3.7 766,847 - GFF776 0.38 -1.3 766,849 + GFF776 0.39 -3.1 766,853 + GFF776 0.39 -2.0 766,861 - GFF776 0.39 +0.9 766,880 - GFF776 0.41 -2.7 766,882 + GFF776 0.41 -1.5 766,882 + GFF776 0.41 -2.8 766,924 + GFF776 0.44 +0.3 766,937 + GFF776 0.44 -2.0 767,008 - GFF776 0.49 -1.7 767,008 - GFF776 0.49 +0.3 767,023 - GFF776 0.50 -2.8 767,023 - GFF776 0.50 +0.3 767,047 + GFF776 0.52 -0.2 767,059 - GFF776 0.52 -2.5 767,083 + GFF776 0.54 -2.9 767,103 - GFF776 0.55 +0.5 767,103 - GFF776 0.55 -2.8 767,130 - GFF776 0.57 -0.7 767,132 + GFF776 0.57 -2.4 767,132 + GFF776 0.57 -2.9 767,132 + GFF776 0.57 -2.1 767,132 + GFF776 0.57 -1.8 767,137 + GFF776 0.58 +0.0 767,137 + GFF776 0.58 -1.9 767,137 + GFF776 0.58 -3.8 767,137 + GFF776 0.58 -1.7 767,137 + GFF776 0.58 -3.2 767,140 - GFF776 0.58 -2.2 767,140 - GFF776 0.58 -1.5 767,145 - GFF776 0.58 -3.2 767,163 + GFF776 0.59 -3.3 767,163 + GFF776 0.59 -1.0 767,169 + GFF776 0.60 -3.4 767,169 + GFF776 0.60 -1.3 767,169 + GFF776 0.60 -1.4 767,171 - GFF776 0.60 -2.1 767,174 + GFF776 0.60 -2.0 767,177 - GFF776 0.60 -2.7 767,177 - GFF776 0.60 -2.7 767,177 - GFF776 0.60 -1.3 767,181 + GFF776 0.60 -2.3 767,183 + GFF776 0.61 -1.6 767,183 + GFF776 0.61 -1.3 767,184 - GFF776 0.61 -1.1 767,189 - GFF776 0.61 -0.9 767,189 - GFF776 0.61 +0.3 767,191 + GFF776 0.61 -2.8 767,191 + GFF776 0.61 -0.7 767,194 - GFF776 0.61 -2.0 767,199 - GFF776 0.62 -1.0 767,250 + GFF776 0.65 -2.8 767,250 + GFF776 0.65 -2.6 767,252 + GFF776 0.65 +0.9 767,255 + GFF776 0.65 -1.6 767,255 + GFF776 0.65 -2.9 767,263 - GFF776 0.66 -1.3 767,273 - GFF776 0.67 -2.7 767,277 - GFF776 0.67 -2.8 767,305 + GFF776 0.69 -2.3 767,350 - GFF776 0.72 -3.0 767,514 - GFF776 0.82 -2.7 767,514 - GFF776 0.82 -1.5 767,568 + GFF776 0.86 -2.3 767,596 - GFF776 0.88 -1.8 767,597 - GFF776 0.88 -3.0 767,606 + GFF776 0.88 -1.6 767,611 + GFF776 0.89 -2.5 767,611 + GFF776 0.89 -0.8 767,616 + GFF776 0.89 -0.8 767,630 - -1.4 767,649 + -2.0 767,672 + -1.5 767,680 - -2.7 767,681 - -2.1 767,785 + -0.3 767,785 + +0.5 767,785 + -2.6 767,793 - -0.5 767,793 - +0.1 767,824 + -0.0 767,824 + +0.7 767,825 + -1.8 767,843 + +2.3 767,843 + +1.8 767,843 + +0.0 767,843 + -0.3 767,843 + -0.3 767,843 + +0.0 767,843 + -0.5 767,843 + +0.2 767,851 - +0.3 767,851 - -0.9 767,851 - +0.6 767,851 - -0.1 767,851 - -0.1 767,851 - -0.0 767,851 - -0.4 767,889 + -0.9 767,926 - -1.0 767,926 - -1.0 767,926 - +0.3 767,979 + +0.2 768,023 + -1.0 768,149 + GFF777 0.19 -0.1 768,167 - GFF777 0.21 +0.0 768,184 + GFF777 0.23 -0.8 768,202 - GFF777 0.25 +0.3 768,212 - GFF777 0.26 -0.6 768,218 + GFF777 0.27 -0.1 768,234 - GFF777 0.29 +0.4 768,240 - GFF777 0.30 +2.3 768,243 + GFF777 0.30 +0.4 768,243 + GFF777 0.30 +0.3 768,243 + GFF777 0.30 -2.4 768,321 - GFF777 0.39 +0.0 768,323 + GFF777 0.39 -0.4 768,323 + GFF777 0.39 -0.3 768,331 - GFF777 0.40 +1.0 768,331 - GFF777 0.40 +0.5 768,331 - GFF777 0.40 +0.3 768,331 - GFF777 0.40 -0.3 768,338 + GFF777 0.41 +0.2 768,346 - GFF777 0.42 +1.7 768,379 - GFF777 0.46 -1.5 768,384 - GFF777 0.46 -1.5 768,384 - GFF777 0.46 +0.7 768,392 - GFF777 0.47 -2.5 768,399 + GFF777 0.48 -0.4 768,430 + GFF777 0.52 -1.7 768,430 + GFF777 0.52 +0.1 768,438 - GFF777 0.53 -1.1 768,438 - GFF777 0.53 +1.2 768,463 - GFF777 0.56 +0.0 768,486 + GFF777 0.58 +1.0 768,561 + GFF777 0.67 -0.8 768,591 + GFF777 0.71 +1.0 768,591 + GFF777 0.71 -0.4 768,648 + GFF777 0.77 -1.2 768,710 - GFF777 0.85 +2.1 768,759 + -0.5 768,775 - +0.5
Or see this region's nucleotide sequence