Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF762 and GFF763 are separated by 165 nucleotides GFF763 and GFF764 overlap by 1 nucleotides GFF764 and GFF765 are separated by 85 nucleotides
GFF762 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 746,498 to 747,307
GFF762
GFF763 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 747,473 to 748,924
GFF763
GFF764 - hypothetical protein, at 748,924 to 749,643
GFF764
GFF765 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 749,729 to 754,264
GFF765
Position (kb) 747
748
749 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 746.483 kb on - strand at 746.503 kb on - strand at 746.540 kb on - strand at 746.588 kb on - strand, within GFF762 at 746.607 kb on + strand, within GFF762 at 746.607 kb on + strand, within GFF762 at 746.607 kb on + strand, within GFF762 at 746.615 kb on - strand, within GFF762 at 746.615 kb on - strand, within GFF762 at 746.618 kb on - strand, within GFF762 at 746.620 kb on + strand, within GFF762 at 746.628 kb on - strand, within GFF762 at 746.628 kb on - strand, within GFF762 at 746.632 kb on + strand, within GFF762 at 746.632 kb on + strand, within GFF762 at 746.706 kb on + strand, within GFF762 at 746.711 kb on + strand, within GFF762 at 746.711 kb on + strand, within GFF762 at 746.711 kb on + strand, within GFF762 at 746.712 kb on - strand, within GFF762 at 746.716 kb on + strand, within GFF762 at 746.716 kb on + strand, within GFF762 at 746.716 kb on + strand, within GFF762 at 746.719 kb on - strand, within GFF762 at 746.724 kb on - strand, within GFF762 at 746.724 kb on - strand, within GFF762 at 746.729 kb on - strand, within GFF762 at 746.747 kb on + strand, within GFF762 at 746.766 kb on + strand, within GFF762 at 746.774 kb on - strand, within GFF762 at 746.790 kb on + strand, within GFF762 at 746.790 kb on + strand, within GFF762 at 746.790 kb on + strand, within GFF762 at 746.790 kb on + strand, within GFF762 at 746.790 kb on + strand, within GFF762 at 746.790 kb on + strand, within GFF762 at 746.790 kb on + strand, within GFF762 at 746.790 kb on + strand, within GFF762 at 746.790 kb on + strand, within GFF762 at 746.795 kb on + strand, within GFF762 at 746.798 kb on + strand, within GFF762 at 746.798 kb on - strand, within GFF762 at 746.798 kb on - strand, within GFF762 at 746.798 kb on - strand, within GFF762 at 746.798 kb on - strand, within GFF762 at 746.821 kb on + strand, within GFF762 at 746.883 kb on - strand, within GFF762 at 746.903 kb on - strand, within GFF762 at 746.906 kb on - strand, within GFF762 at 746.955 kb on + strand, within GFF762 at 747.018 kb on + strand, within GFF762 at 747.018 kb on + strand, within GFF762 at 747.025 kb on - strand, within GFF762 at 747.026 kb on - strand, within GFF762 at 747.082 kb on - strand, within GFF762 at 747.107 kb on - strand, within GFF762 at 747.109 kb on + strand, within GFF762 at 747.120 kb on + strand, within GFF762 at 747.146 kb on + strand, within GFF762 at 747.146 kb on + strand, within GFF762 at 747.154 kb on - strand, within GFF762 at 747.156 kb on + strand, within GFF762 at 747.168 kb on + strand, within GFF762 at 747.176 kb on - strand, within GFF762 at 747.223 kb on + strand, within GFF762 at 747.240 kb on - strand at 747.245 kb on + strand at 747.245 kb on + strand at 747.245 kb on + strand at 747.253 kb on - strand at 747.253 kb on - strand at 747.286 kb on + strand at 747.293 kb on - strand at 747.294 kb on - strand at 747.294 kb on - strand at 747.294 kb on - strand at 747.294 kb on - strand at 747.294 kb on - strand at 747.294 kb on - strand at 747.295 kb on - strand at 747.295 kb on - strand at 747.409 kb on + strand at 747.517 kb on - strand at 747.517 kb on - strand at 747.534 kb on + strand at 747.586 kb on + strand at 747.586 kb on + strand at 747.586 kb on + strand at 747.586 kb on + strand at 747.586 kb on + strand at 747.586 kb on + strand at 747.586 kb on + strand at 747.586 kb on + strand at 747.629 kb on + strand, within GFF763 at 747.642 kb on - strand, within GFF763 at 747.647 kb on - strand, within GFF763 at 747.647 kb on - strand, within GFF763 at 747.647 kb on - strand, within GFF763 at 747.653 kb on + strand, within GFF763 at 747.713 kb on + strand, within GFF763 at 747.713 kb on + strand, within GFF763 at 747.713 kb on + strand, within GFF763 at 747.713 kb on + strand, within GFF763 at 747.713 kb on + strand, within GFF763 at 747.713 kb on + strand, within GFF763 at 747.714 kb on + strand, within GFF763 at 747.722 kb on - strand, within GFF763 at 747.722 kb on - strand, within GFF763 at 747.722 kb on - strand, within GFF763 at 747.722 kb on - strand, within GFF763 at 747.722 kb on - strand, within GFF763 at 747.724 kb on + strand, within GFF763 at 747.728 kb on + strand, within GFF763 at 747.732 kb on - strand, within GFF763 at 747.768 kb on + strand, within GFF763 at 747.787 kb on - strand, within GFF763 at 747.839 kb on - strand, within GFF763 at 747.850 kb on - strand, within GFF763 at 747.866 kb on + strand, within GFF763 at 747.886 kb on - strand, within GFF763 at 747.900 kb on - strand, within GFF763 at 747.931 kb on - strand, within GFF763 at 747.952 kb on + strand, within GFF763 at 747.968 kb on + strand, within GFF763 at 748.012 kb on + strand, within GFF763 at 748.036 kb on - strand, within GFF763 at 748.058 kb on - strand, within GFF763 at 748.093 kb on + strand, within GFF763 at 748.125 kb on + strand, within GFF763 at 748.149 kb on + strand, within GFF763 at 748.159 kb on + strand, within GFF763 at 748.179 kb on - strand, within GFF763 at 748.224 kb on - strand, within GFF763 at 748.249 kb on + strand, within GFF763 at 748.274 kb on + strand, within GFF763 at 748.301 kb on + strand, within GFF763 at 748.311 kb on + strand, within GFF763 at 748.318 kb on + strand, within GFF763 at 748.328 kb on + strand, within GFF763 at 748.375 kb on - strand, within GFF763 at 748.376 kb on + strand, within GFF763 at 748.382 kb on - strand, within GFF763 at 748.384 kb on - strand, within GFF763 at 748.409 kb on + strand, within GFF763 at 748.497 kb on - strand, within GFF763 at 748.538 kb on - strand, within GFF763 at 748.547 kb on - strand, within GFF763 at 748.596 kb on + strand, within GFF763 at 748.604 kb on - strand, within GFF763 at 748.613 kb on + strand, within GFF763 at 748.622 kb on + strand, within GFF763 at 748.627 kb on + strand, within GFF763 at 748.665 kb on - strand, within GFF763 at 748.688 kb on + strand, within GFF763 at 748.702 kb on + strand, within GFF763 at 748.710 kb on - strand, within GFF763 at 748.715 kb on - strand, within GFF763 at 748.742 kb on - strand, within GFF763 at 748.771 kb on - strand, within GFF763 at 748.786 kb on - strand at 748.786 kb on - strand at 748.812 kb on + strand at 748.833 kb on - strand at 748.833 kb on - strand at 748.833 kb on - strand at 748.890 kb on - strand at 748.890 kb on - strand at 748.890 kb on - strand at 748.926 kb on - strand at 748.985 kb on - strand at 749.021 kb on + strand, within GFF764 at 749.056 kb on + strand, within GFF764 at 749.056 kb on + strand, within GFF764 at 749.135 kb on + strand, within GFF764 at 749.151 kb on - strand, within GFF764 at 749.191 kb on - strand, within GFF764 at 749.193 kb on + strand, within GFF764 at 749.200 kb on + strand, within GFF764 at 749.200 kb on + strand, within GFF764 at 749.200 kb on + strand, within GFF764 at 749.200 kb on + strand, within GFF764 at 749.201 kb on - strand, within GFF764 at 749.205 kb on + strand, within GFF764 at 749.208 kb on - strand, within GFF764 at 749.208 kb on - strand, within GFF764 at 749.219 kb on - strand, within GFF764 at 749.282 kb on + strand, within GFF764 at 749.358 kb on - strand, within GFF764 at 749.386 kb on - strand, within GFF764 at 749.417 kb on + strand, within GFF764 at 749.434 kb on + strand, within GFF764 at 749.453 kb on - strand, within GFF764 at 749.499 kb on + strand, within GFF764 at 749.499 kb on + strand, within GFF764 at 749.507 kb on - strand, within GFF764 at 749.543 kb on + strand, within GFF764 at 749.561 kb on - strand, within GFF764 at 749.561 kb on - strand, within GFF764 at 749.567 kb on + strand, within GFF764 at 749.567 kb on + strand, within GFF764 at 749.570 kb on + strand, within GFF764 at 749.575 kb on - strand at 749.580 kb on + strand at 749.583 kb on - strand at 749.583 kb on - strand at 749.588 kb on - strand at 749.588 kb on - strand at 749.621 kb on - strand at 749.717 kb on + strand at 749.717 kb on + strand at 749.754 kb on + strand at 749.754 kb on + strand at 749.754 kb on + strand at 749.754 kb on + strand at 749.754 kb on + strand at 749.754 kb on + strand at 749.754 kb on + strand at 749.754 kb on + strand at 749.754 kb on + strand at 749.754 kb on + strand at 749.762 kb on - strand at 749.762 kb on - strand at 749.762 kb on - strand at 749.762 kb on - strand at 749.762 kb on - strand at 749.762 kb on - strand at 749.773 kb on + strand at 749.775 kb on + strand at 749.786 kb on + strand at 749.786 kb on + strand at 749.810 kb on + strand at 749.890 kb on + strand at 749.890 kb on + strand at 749.890 kb on + strand at 749.890 kb on + strand at 749.890 kb on + strand at 749.890 kb on + strand at 749.890 kb on + strand at 749.898 kb on - strand at 749.898 kb on - strand at 749.898 kb on - strand at 749.898 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 746,483 - -1.9 746,503 - -0.3 746,540 - +0.1 746,588 - GFF762 0.11 -0.2 746,607 + GFF762 0.13 +0.3 746,607 + GFF762 0.13 +1.6 746,607 + GFF762 0.13 +1.4 746,615 - GFF762 0.14 +0.4 746,615 - GFF762 0.14 +1.1 746,618 - GFF762 0.15 -0.9 746,620 + GFF762 0.15 -0.6 746,628 - GFF762 0.16 -1.1 746,628 - GFF762 0.16 +0.4 746,632 + GFF762 0.17 +1.0 746,632 + GFF762 0.17 +1.7 746,706 + GFF762 0.26 -0.2 746,711 + GFF762 0.26 +0.2 746,711 + GFF762 0.26 +0.4 746,711 + GFF762 0.26 +1.3 746,712 - GFF762 0.26 +0.7 746,716 + GFF762 0.27 +1.5 746,716 + GFF762 0.27 +0.9 746,716 + GFF762 0.27 +1.7 746,719 - GFF762 0.27 -0.4 746,724 - GFF762 0.28 +2.1 746,724 - GFF762 0.28 -0.5 746,729 - GFF762 0.29 +0.2 746,747 + GFF762 0.31 +1.2 746,766 + GFF762 0.33 +1.0 746,774 - GFF762 0.34 +0.3 746,790 + GFF762 0.36 -0.3 746,790 + GFF762 0.36 -0.3 746,790 + GFF762 0.36 +0.3 746,790 + GFF762 0.36 -0.0 746,790 + GFF762 0.36 +2.0 746,790 + GFF762 0.36 +1.1 746,790 + GFF762 0.36 -0.0 746,790 + GFF762 0.36 +0.4 746,790 + GFF762 0.36 +0.4 746,795 + GFF762 0.37 +2.6 746,798 + GFF762 0.37 +2.2 746,798 - GFF762 0.37 +1.2 746,798 - GFF762 0.37 -0.2 746,798 - GFF762 0.37 +1.1 746,798 - GFF762 0.37 +0.5 746,821 + GFF762 0.40 -2.1 746,883 - GFF762 0.48 +0.7 746,903 - GFF762 0.50 +1.1 746,906 - GFF762 0.50 +0.8 746,955 + GFF762 0.56 +1.3 747,018 + GFF762 0.64 +0.5 747,018 + GFF762 0.64 -0.7 747,025 - GFF762 0.65 +0.9 747,026 - GFF762 0.65 +1.6 747,082 - GFF762 0.72 -0.0 747,107 - GFF762 0.75 -0.8 747,109 + GFF762 0.75 -0.3 747,120 + GFF762 0.77 -0.1 747,146 + GFF762 0.80 +2.0 747,146 + GFF762 0.80 -1.4 747,154 - GFF762 0.81 +0.7 747,156 + GFF762 0.81 +0.1 747,168 + GFF762 0.83 +1.2 747,176 - GFF762 0.84 +0.5 747,223 + GFF762 0.90 -0.0 747,240 - +0.2 747,245 + +0.6 747,245 + +1.0 747,245 + +1.3 747,253 - +1.1 747,253 - +2.3 747,286 + +0.1 747,293 - +0.2 747,294 - +0.3 747,294 - -0.4 747,294 - -0.0 747,294 - -0.1 747,294 - -1.3 747,294 - +1.3 747,295 - -2.1 747,295 - -0.8 747,409 + +0.3 747,517 - -1.6 747,517 - -1.8 747,534 + -2.0 747,586 + -2.3 747,586 + -0.0 747,586 + -2.1 747,586 + -1.7 747,586 + -0.7 747,586 + -2.4 747,586 + -1.9 747,586 + -1.7 747,629 + GFF763 0.11 -2.4 747,642 - GFF763 0.12 -1.5 747,647 - GFF763 0.12 -0.3 747,647 - GFF763 0.12 -1.3 747,647 - GFF763 0.12 -1.6 747,653 + GFF763 0.12 -3.0 747,713 + GFF763 0.17 -3.3 747,713 + GFF763 0.17 -2.5 747,713 + GFF763 0.17 -1.0 747,713 + GFF763 0.17 -1.7 747,713 + GFF763 0.17 -2.5 747,713 + GFF763 0.17 -3.7 747,714 + GFF763 0.17 -1.6 747,722 - GFF763 0.17 -3.0 747,722 - GFF763 0.17 -2.4 747,722 - GFF763 0.17 -2.1 747,722 - GFF763 0.17 -2.5 747,722 - GFF763 0.17 -0.3 747,724 + GFF763 0.17 -0.9 747,728 + GFF763 0.18 -2.2 747,732 - GFF763 0.18 -1.6 747,768 + GFF763 0.20 -1.1 747,787 - GFF763 0.22 -1.2 747,839 - GFF763 0.25 -1.6 747,850 - GFF763 0.26 -1.9 747,866 + GFF763 0.27 -0.7 747,886 - GFF763 0.28 -3.3 747,900 - GFF763 0.29 -0.3 747,931 - GFF763 0.32 -1.3 747,952 + GFF763 0.33 -0.7 747,968 + GFF763 0.34 -0.9 748,012 + GFF763 0.37 -1.6 748,036 - GFF763 0.39 -2.6 748,058 - GFF763 0.40 -1.9 748,093 + GFF763 0.43 -1.9 748,125 + GFF763 0.45 +0.5 748,149 + GFF763 0.47 -2.4 748,159 + GFF763 0.47 -1.3 748,179 - GFF763 0.49 -0.5 748,224 - GFF763 0.52 -3.0 748,249 + GFF763 0.53 -2.6 748,274 + GFF763 0.55 -1.7 748,301 + GFF763 0.57 +0.2 748,311 + GFF763 0.58 -2.1 748,318 + GFF763 0.58 -2.1 748,328 + GFF763 0.59 -2.2 748,375 - GFF763 0.62 -2.5 748,376 + GFF763 0.62 -0.8 748,382 - GFF763 0.63 -2.3 748,384 - GFF763 0.63 -3.1 748,409 + GFF763 0.64 -1.0 748,497 - GFF763 0.71 -2.1 748,538 - GFF763 0.73 -2.1 748,547 - GFF763 0.74 -2.3 748,596 + GFF763 0.77 -0.0 748,604 - GFF763 0.78 -0.3 748,613 + GFF763 0.79 +0.1 748,622 + GFF763 0.79 -2.3 748,627 + GFF763 0.79 -2.4 748,665 - GFF763 0.82 -0.7 748,688 + GFF763 0.84 -2.5 748,702 + GFF763 0.85 -2.8 748,710 - GFF763 0.85 -0.4 748,715 - GFF763 0.86 -1.9 748,742 - GFF763 0.87 -3.3 748,771 - GFF763 0.89 -2.2 748,786 - -0.4 748,786 - -1.9 748,812 + +0.1 748,833 - -1.7 748,833 - -3.6 748,833 - -2.7 748,890 - -1.0 748,890 - -1.0 748,890 - -2.6 748,926 - -2.2 748,985 - -3.2 749,021 + GFF764 0.13 -0.4 749,056 + GFF764 0.18 +1.0 749,056 + GFF764 0.18 -0.3 749,135 + GFF764 0.29 -0.8 749,151 - GFF764 0.32 -0.7 749,191 - GFF764 0.37 +0.3 749,193 + GFF764 0.37 -1.3 749,200 + GFF764 0.38 -1.0 749,200 + GFF764 0.38 -0.4 749,200 + GFF764 0.38 +0.3 749,200 + GFF764 0.38 -0.6 749,201 - GFF764 0.38 -0.9 749,205 + GFF764 0.39 +0.9 749,208 - GFF764 0.39 -1.3 749,208 - GFF764 0.39 -1.7 749,219 - GFF764 0.41 -1.3 749,282 + GFF764 0.50 -1.0 749,358 - GFF764 0.60 -1.4 749,386 - GFF764 0.64 -2.1 749,417 + GFF764 0.68 -0.1 749,434 + GFF764 0.71 +0.5 749,453 - GFF764 0.73 -1.4 749,499 + GFF764 0.80 +0.5 749,499 + GFF764 0.80 +0.1 749,507 - GFF764 0.81 -2.3 749,543 + GFF764 0.86 -0.4 749,561 - GFF764 0.88 -1.6 749,561 - GFF764 0.88 +1.0 749,567 + GFF764 0.89 +0.5 749,567 + GFF764 0.89 +1.5 749,570 + GFF764 0.90 -0.6 749,575 - +0.4 749,580 + -0.5 749,583 - -2.2 749,583 - -0.3 749,588 - -1.2 749,588 - +0.7 749,621 - -1.0 749,717 + +0.3 749,717 + +1.0 749,754 + -2.8 749,754 + -2.6 749,754 + -0.1 749,754 + -3.0 749,754 + -0.0 749,754 + -2.0 749,754 + -2.7 749,754 + -1.4 749,754 + -2.5 749,754 + -1.8 749,762 - -1.1 749,762 - -1.9 749,762 - -1.3 749,762 - -3.1 749,762 - -2.7 749,762 - -3.0 749,773 + -1.7 749,775 + -2.9 749,786 + -2.7 749,786 + -1.7 749,810 + -1.6 749,890 + -2.5 749,890 + -3.1 749,890 + -0.3 749,890 + -1.9 749,890 + -1.4 749,890 + -0.3 749,890 + +0.3 749,898 - -2.4 749,898 - +0.6 749,898 - +0.1 749,898 - -2.1
Or see this region's nucleotide sequence