Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF757 and GFF758 are separated by 97 nucleotides GFF758 and GFF759 are separated by 199 nucleotides GFF759 and GFF760 are separated by 235 nucleotides GFF760 and GFF761 are separated by 162 nucleotides
GFF757 - hypothetical protein, at 742,739 to 743,296
GFF757
GFF758 - hypothetical protein, at 743,394 to 743,792
GFF758
GFF759 - hypothetical protein, at 743,992 to 744,408
GFF759
GFF760 - Putative transmembrane protein, at 744,644 to 745,222
GFF760
GFF761 - NAD-dependent epimerase/dehydratase, at 745,385 to 746,314
GFF761
Position (kb) 743
744
745 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 742.996 kb on + strand, within GFF757 at 742.996 kb on + strand, within GFF757 at 742.996 kb on + strand, within GFF757 at 742.996 kb on + strand, within GFF757 at 742.996 kb on + strand, within GFF757 at 742.996 kb on + strand, within GFF757 at 742.996 kb on + strand, within GFF757 at 742.996 kb on + strand, within GFF757 at 742.996 kb on + strand, within GFF757 at 743.004 kb on - strand, within GFF757 at 743.004 kb on - strand, within GFF757 at 743.004 kb on - strand, within GFF757 at 743.004 kb on - strand, within GFF757 at 743.004 kb on - strand, within GFF757 at 743.004 kb on - strand, within GFF757 at 743.004 kb on - strand, within GFF757 at 743.004 kb on - strand, within GFF757 at 743.004 kb on - strand, within GFF757 at 743.019 kb on - strand, within GFF757 at 743.019 kb on - strand, within GFF757 at 743.024 kb on + strand, within GFF757 at 743.045 kb on + strand, within GFF757 at 743.045 kb on + strand, within GFF757 at 743.051 kb on - strand, within GFF757 at 743.053 kb on - strand, within GFF757 at 743.063 kb on - strand, within GFF757 at 743.110 kb on + strand, within GFF757 at 743.110 kb on + strand, within GFF757 at 743.118 kb on - strand, within GFF757 at 743.153 kb on + strand, within GFF757 at 743.153 kb on - strand, within GFF757 at 743.236 kb on + strand, within GFF757 at 743.279 kb on + strand at 743.287 kb on - strand at 743.287 kb on - strand at 743.307 kb on - strand at 743.330 kb on - strand at 743.330 kb on - strand at 743.330 kb on - strand at 743.330 kb on - strand at 743.343 kb on + strand at 743.348 kb on + strand at 743.351 kb on - strand at 743.362 kb on + strand at 743.364 kb on + strand at 743.402 kb on + strand at 743.403 kb on - strand at 743.410 kb on - strand at 743.415 kb on - strand at 743.419 kb on + strand at 743.434 kb on + strand, within GFF758 at 743.463 kb on + strand, within GFF758 at 743.468 kb on + strand, within GFF758 at 743.468 kb on + strand, within GFF758 at 743.476 kb on - strand, within GFF758 at 743.476 kb on - strand, within GFF758 at 743.509 kb on + strand, within GFF758 at 743.532 kb on - strand, within GFF758 at 743.549 kb on + strand, within GFF758 at 743.562 kb on - strand, within GFF758 at 743.598 kb on - strand, within GFF758 at 743.621 kb on + strand, within GFF758 at 743.631 kb on + strand, within GFF758 at 743.658 kb on + strand, within GFF758 at 743.658 kb on + strand, within GFF758 at 743.658 kb on + strand, within GFF758 at 743.658 kb on + strand, within GFF758 at 743.675 kb on + strand, within GFF758 at 743.681 kb on + strand, within GFF758 at 743.705 kb on - strand, within GFF758 at 743.705 kb on - strand, within GFF758 at 743.721 kb on - strand, within GFF758 at 743.725 kb on + strand, within GFF758 at 743.769 kb on + strand at 743.769 kb on + strand at 743.774 kb on + strand at 743.774 kb on + strand at 743.777 kb on + strand at 743.777 kb on - strand at 743.782 kb on - strand at 743.782 kb on - strand at 743.791 kb on + strand at 743.791 kb on + strand at 743.791 kb on + strand at 743.791 kb on + strand at 743.791 kb on + strand at 743.794 kb on - strand at 743.796 kb on + strand at 743.797 kb on + strand at 743.797 kb on + strand at 743.799 kb on - strand at 743.799 kb on - strand at 743.799 kb on - strand at 743.799 kb on - strand at 743.799 kb on - strand at 743.799 kb on - strand at 743.810 kb on + strand at 743.810 kb on + strand at 743.810 kb on + strand at 743.810 kb on + strand at 743.810 kb on + strand at 743.810 kb on + strand at 743.810 kb on + strand at 743.819 kb on + strand at 743.819 kb on + strand at 743.827 kb on - strand at 743.828 kb on - strand at 743.840 kb on - strand at 743.857 kb on - strand at 743.870 kb on + strand at 743.871 kb on + strand at 743.871 kb on + strand at 743.878 kb on + strand at 743.879 kb on - strand at 743.879 kb on - strand at 743.886 kb on - strand at 743.897 kb on + strand at 743.905 kb on + strand at 743.905 kb on + strand at 743.905 kb on + strand at 743.931 kb on - strand at 743.941 kb on + strand at 743.941 kb on + strand at 743.949 kb on - strand at 743.949 kb on - strand at 743.951 kb on + strand at 743.968 kb on + strand at 743.977 kb on - strand at 743.991 kb on - strand at 744.000 kb on + strand at 744.008 kb on - strand at 744.008 kb on - strand at 744.008 kb on - strand at 744.018 kb on + strand at 744.025 kb on + strand at 744.026 kb on - strand at 744.026 kb on - strand at 744.028 kb on + strand at 744.035 kb on + strand, within GFF759 at 744.050 kb on - strand, within GFF759 at 744.051 kb on - strand, within GFF759 at 744.061 kb on - strand, within GFF759 at 744.061 kb on - strand, within GFF759 at 744.086 kb on + strand, within GFF759 at 744.086 kb on + strand, within GFF759 at 744.094 kb on - strand, within GFF759 at 744.099 kb on - strand, within GFF759 at 744.112 kb on + strand, within GFF759 at 744.139 kb on - strand, within GFF759 at 744.141 kb on - strand, within GFF759 at 744.143 kb on - strand, within GFF759 at 744.167 kb on + strand, within GFF759 at 744.169 kb on - strand, within GFF759 at 744.170 kb on - strand, within GFF759 at 744.170 kb on - strand, within GFF759 at 744.175 kb on - strand, within GFF759 at 744.175 kb on - strand, within GFF759 at 744.175 kb on - strand, within GFF759 at 744.175 kb on - strand, within GFF759 at 744.177 kb on + strand, within GFF759 at 744.177 kb on + strand, within GFF759 at 744.185 kb on - strand, within GFF759 at 744.185 kb on - strand, within GFF759 at 744.185 kb on - strand, within GFF759 at 744.185 kb on - strand, within GFF759 at 744.204 kb on - strand, within GFF759 at 744.225 kb on - strand, within GFF759 at 744.237 kb on + strand, within GFF759 at 744.253 kb on + strand, within GFF759 at 744.260 kb on + strand, within GFF759 at 744.268 kb on - strand, within GFF759 at 744.268 kb on - strand, within GFF759 at 744.281 kb on + strand, within GFF759 at 744.289 kb on - strand, within GFF759 at 744.289 kb on - strand, within GFF759 at 744.301 kb on + strand, within GFF759 at 744.309 kb on + strand, within GFF759 at 744.339 kb on + strand, within GFF759 at 744.339 kb on + strand, within GFF759 at 744.344 kb on + strand, within GFF759 at 744.347 kb on - strand, within GFF759 at 744.352 kb on - strand, within GFF759 at 744.386 kb on + strand at 744.386 kb on + strand at 744.386 kb on + strand at 744.391 kb on + strand at 744.391 kb on + strand at 744.394 kb on - strand at 744.394 kb on - strand at 744.394 kb on - strand at 744.394 kb on - strand at 744.394 kb on - strand at 744.394 kb on - strand at 744.394 kb on - strand at 744.399 kb on - strand at 744.399 kb on - strand at 744.399 kb on - strand at 744.406 kb on - strand at 744.429 kb on + strand at 744.435 kb on + strand at 744.451 kb on + strand at 744.496 kb on - strand at 744.496 kb on - strand at 744.496 kb on - strand at 744.496 kb on - strand at 744.516 kb on + strand at 744.516 kb on + strand at 744.522 kb on + strand at 744.524 kb on - strand at 744.545 kb on - strand at 744.555 kb on - strand at 744.569 kb on + strand at 744.629 kb on + strand at 744.629 kb on + strand at 744.640 kb on + strand at 744.658 kb on - strand at 744.660 kb on + strand at 744.662 kb on + strand at 744.663 kb on + strand at 744.668 kb on - strand at 744.699 kb on + strand at 744.707 kb on - strand, within GFF760 at 744.719 kb on + strand, within GFF760 at 744.731 kb on + strand, within GFF760 at 744.768 kb on - strand, within GFF760 at 744.813 kb on - strand, within GFF760 at 744.827 kb on + strand, within GFF760 at 744.827 kb on + strand, within GFF760 at 744.830 kb on - strand, within GFF760 at 744.833 kb on + strand, within GFF760 at 744.835 kb on - strand, within GFF760 at 744.835 kb on - strand, within GFF760 at 744.838 kb on + strand, within GFF760 at 744.841 kb on - strand, within GFF760 at 744.847 kb on + strand, within GFF760 at 744.876 kb on - strand, within GFF760 at 744.888 kb on + strand, within GFF760 at 744.892 kb on - strand, within GFF760 at 744.901 kb on - strand, within GFF760 at 744.925 kb on + strand, within GFF760 at 744.933 kb on - strand, within GFF760 at 744.933 kb on - strand, within GFF760 at 744.933 kb on - strand, within GFF760 at 744.937 kb on + strand, within GFF760 at 744.937 kb on + strand, within GFF760 at 744.937 kb on + strand, within GFF760 at 744.937 kb on + strand, within GFF760 at 744.960 kb on - strand, within GFF760 at 744.960 kb on - strand, within GFF760 at 744.965 kb on - strand, within GFF760 at 744.965 kb on - strand, within GFF760 at 744.980 kb on - strand, within GFF760 at 744.999 kb on + strand, within GFF760 at 745.014 kb on + strand, within GFF760 at 745.014 kb on - strand, within GFF760 at 745.022 kb on - strand, within GFF760 at 745.049 kb on + strand, within GFF760 at 745.084 kb on + strand, within GFF760 at 745.084 kb on + strand, within GFF760 at 745.090 kb on + strand, within GFF760 at 745.092 kb on + strand, within GFF760 at 745.092 kb on - strand, within GFF760 at 745.092 kb on - strand, within GFF760 at 745.105 kb on + strand, within GFF760 at 745.105 kb on + strand, within GFF760 at 745.110 kb on + strand, within GFF760 at 745.128 kb on - strand, within GFF760 at 745.128 kb on - strand, within GFF760 at 745.128 kb on - strand, within GFF760 at 745.128 kb on - strand, within GFF760 at 745.138 kb on - strand, within GFF760 at 745.153 kb on - strand, within GFF760 at 745.153 kb on - strand, within GFF760 at 745.155 kb on - strand, within GFF760 at 745.158 kb on - strand, within GFF760 at 745.158 kb on - strand, within GFF760 at 745.160 kb on + strand, within GFF760 at 745.160 kb on + strand, within GFF760 at 745.160 kb on + strand, within GFF760 at 745.160 kb on + strand, within GFF760 at 745.163 kb on - strand, within GFF760 at 745.163 kb on - strand, within GFF760 at 745.163 kb on - strand, within GFF760 at 745.168 kb on - strand at 745.168 kb on - strand at 745.168 kb on - strand at 745.174 kb on + strand at 745.176 kb on + strand at 745.186 kb on + strand at 745.191 kb on - strand at 745.202 kb on + strand at 745.202 kb on + strand at 745.207 kb on + strand at 745.317 kb on - strand at 745.317 kb on - strand at 745.351 kb on - strand at 745.357 kb on - strand at 745.374 kb on + strand at 745.377 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 742,996 + GFF757 0.46 +0.3 742,996 + GFF757 0.46 -0.8 742,996 + GFF757 0.46 +0.3 742,996 + GFF757 0.46 -1.4 742,996 + GFF757 0.46 -0.7 742,996 + GFF757 0.46 +0.1 742,996 + GFF757 0.46 -0.1 742,996 + GFF757 0.46 -0.0 742,996 + GFF757 0.46 +1.5 743,004 - GFF757 0.47 +0.1 743,004 - GFF757 0.47 -0.2 743,004 - GFF757 0.47 +1.0 743,004 - GFF757 0.47 -0.0 743,004 - GFF757 0.47 +1.0 743,004 - GFF757 0.47 -0.4 743,004 - GFF757 0.47 -0.4 743,004 - GFF757 0.47 +0.3 743,004 - GFF757 0.47 -1.5 743,019 - GFF757 0.50 -2.0 743,019 - GFF757 0.50 -0.4 743,024 + GFF757 0.51 -0.0 743,045 + GFF757 0.55 -1.6 743,045 + GFF757 0.55 +0.3 743,051 - GFF757 0.56 +0.1 743,053 - GFF757 0.56 -0.4 743,063 - GFF757 0.58 -0.9 743,110 + GFF757 0.66 +0.8 743,110 + GFF757 0.66 +0.3 743,118 - GFF757 0.68 -0.0 743,153 + GFF757 0.74 -0.2 743,153 - GFF757 0.74 -0.3 743,236 + GFF757 0.89 +1.4 743,279 + -1.0 743,287 - -0.1 743,287 - +0.9 743,307 - -1.2 743,330 - +0.5 743,330 - +0.1 743,330 - +1.2 743,330 - -0.1 743,343 + -1.9 743,348 + -0.5 743,351 - -0.4 743,362 + -1.4 743,364 + -0.6 743,402 + +0.1 743,403 - -0.7 743,410 - +0.1 743,415 - +0.6 743,419 + -0.5 743,434 + GFF758 0.10 +0.4 743,463 + GFF758 0.17 -0.5 743,468 + GFF758 0.19 -0.4 743,468 + GFF758 0.19 +0.8 743,476 - GFF758 0.21 +0.4 743,476 - GFF758 0.21 +1.3 743,509 + GFF758 0.29 -0.4 743,532 - GFF758 0.35 -0.8 743,549 + GFF758 0.39 -1.3 743,562 - GFF758 0.42 -1.5 743,598 - GFF758 0.51 +0.2 743,621 + GFF758 0.57 -0.7 743,631 + GFF758 0.59 -1.8 743,658 + GFF758 0.66 -1.7 743,658 + GFF758 0.66 -1.6 743,658 + GFF758 0.66 +0.2 743,658 + GFF758 0.66 +0.9 743,675 + GFF758 0.70 +0.6 743,681 + GFF758 0.72 -0.3 743,705 - GFF758 0.78 -0.4 743,705 - GFF758 0.78 +0.1 743,721 - GFF758 0.82 -0.5 743,725 + GFF758 0.83 -0.8 743,769 + -0.1 743,769 + -0.2 743,774 + -1.4 743,774 + -0.1 743,777 + -0.1 743,777 - +0.8 743,782 - +0.5 743,782 - +1.8 743,791 + -1.5 743,791 + -1.7 743,791 + -0.4 743,791 + -0.8 743,791 + +0.6 743,794 - +0.6 743,796 + -0.6 743,797 + -0.1 743,797 + -0.0 743,799 - +0.3 743,799 - -0.2 743,799 - -1.1 743,799 - -0.5 743,799 - -0.1 743,799 - -0.2 743,810 + +1.2 743,810 + -0.2 743,810 + -1.3 743,810 + +0.1 743,810 + +0.3 743,810 + +0.6 743,810 + +1.3 743,819 + -0.3 743,819 + -0.2 743,827 - -0.7 743,828 - +1.4 743,840 - -0.4 743,857 - -1.1 743,870 + -0.2 743,871 + -1.6 743,871 + -0.4 743,878 + -1.1 743,879 - -0.5 743,879 - +0.7 743,886 - +0.1 743,897 + +0.6 743,905 + -0.4 743,905 + +1.3 743,905 + -1.2 743,931 - -1.6 743,941 + -0.7 743,941 + +0.6 743,949 - +0.2 743,949 - -0.9 743,951 + +0.2 743,968 + -0.2 743,977 - -0.3 743,991 - -2.1 744,000 + -0.6 744,008 - -2.2 744,008 - -0.2 744,008 - -1.6 744,018 + +0.5 744,025 + -0.4 744,026 - -0.4 744,026 - -0.9 744,028 + -1.1 744,035 + GFF759 0.10 -0.6 744,050 - GFF759 0.14 -1.2 744,051 - GFF759 0.14 -1.6 744,061 - GFF759 0.17 -1.2 744,061 - GFF759 0.17 -0.4 744,086 + GFF759 0.23 +1.1 744,086 + GFF759 0.23 -0.8 744,094 - GFF759 0.24 +1.7 744,099 - GFF759 0.26 -0.3 744,112 + GFF759 0.29 -0.6 744,139 - GFF759 0.35 -1.7 744,141 - GFF759 0.36 -0.5 744,143 - GFF759 0.36 +1.2 744,167 + GFF759 0.42 +1.3 744,169 - GFF759 0.42 -0.1 744,170 - GFF759 0.43 +1.0 744,170 - GFF759 0.43 -0.7 744,175 - GFF759 0.44 +0.7 744,175 - GFF759 0.44 +0.3 744,175 - GFF759 0.44 +0.9 744,175 - GFF759 0.44 -0.4 744,177 + GFF759 0.44 +0.2 744,177 + GFF759 0.44 +0.1 744,185 - GFF759 0.46 -1.8 744,185 - GFF759 0.46 -0.5 744,185 - GFF759 0.46 -1.7 744,185 - GFF759 0.46 +0.4 744,204 - GFF759 0.51 +1.5 744,225 - GFF759 0.56 -0.8 744,237 + GFF759 0.59 +1.1 744,253 + GFF759 0.63 +0.8 744,260 + GFF759 0.64 -0.5 744,268 - GFF759 0.66 +0.2 744,268 - GFF759 0.66 -1.2 744,281 + GFF759 0.69 -0.3 744,289 - GFF759 0.71 -0.3 744,289 - GFF759 0.71 -1.3 744,301 + GFF759 0.74 -0.8 744,309 + GFF759 0.76 -2.4 744,339 + GFF759 0.83 -0.8 744,339 + GFF759 0.83 +0.2 744,344 + GFF759 0.84 -1.2 744,347 - GFF759 0.85 -1.4 744,352 - GFF759 0.86 +1.2 744,386 + -0.4 744,386 + -0.4 744,386 + -1.6 744,391 + +0.1 744,391 + -0.1 744,394 - +0.6 744,394 - -1.7 744,394 - -1.2 744,394 - +0.1 744,394 - -0.4 744,394 - +1.1 744,394 - +1.1 744,399 - +0.4 744,399 - +0.2 744,399 - -0.5 744,406 - +0.9 744,429 + -1.2 744,435 + -0.2 744,451 + -0.1 744,496 - -2.2 744,496 - -1.9 744,496 - -2.8 744,496 - +0.3 744,516 + -0.3 744,516 + -0.1 744,522 + -1.4 744,524 - -0.2 744,545 - +0.1 744,555 - +0.3 744,569 + -0.5 744,629 + -1.9 744,629 + +1.4 744,640 + -0.6 744,658 - -2.3 744,660 + +0.5 744,662 + -0.6 744,663 + +1.6 744,668 - +0.7 744,699 + -1.6 744,707 - GFF760 0.11 -0.2 744,719 + GFF760 0.13 -0.9 744,731 + GFF760 0.15 +1.1 744,768 - GFF760 0.21 -0.9 744,813 - GFF760 0.29 +1.0 744,827 + GFF760 0.32 -0.5 744,827 + GFF760 0.32 -1.9 744,830 - GFF760 0.32 +1.1 744,833 + GFF760 0.33 +1.0 744,835 - GFF760 0.33 +0.3 744,835 - GFF760 0.33 -0.1 744,838 + GFF760 0.34 +0.5 744,841 - GFF760 0.34 +1.8 744,847 + GFF760 0.35 -0.8 744,876 - GFF760 0.40 -0.4 744,888 + GFF760 0.42 +0.2 744,892 - GFF760 0.43 -2.7 744,901 - GFF760 0.44 +0.4 744,925 + GFF760 0.49 -0.4 744,933 - GFF760 0.50 +0.0 744,933 - GFF760 0.50 -0.4 744,933 - GFF760 0.50 +1.6 744,937 + GFF760 0.51 +0.9 744,937 + GFF760 0.51 -0.2 744,937 + GFF760 0.51 -1.7 744,937 + GFF760 0.51 -1.9 744,960 - GFF760 0.55 -1.5 744,960 - GFF760 0.55 +0.1 744,965 - GFF760 0.55 -0.2 744,965 - GFF760 0.55 +0.4 744,980 - GFF760 0.58 -1.4 744,999 + GFF760 0.61 -0.4 745,014 + GFF760 0.64 -0.8 745,014 - GFF760 0.64 +0.3 745,022 - GFF760 0.65 -1.0 745,049 + GFF760 0.70 -1.5 745,084 + GFF760 0.76 +1.5 745,084 + GFF760 0.76 -0.2 745,090 + GFF760 0.77 -0.4 745,092 + GFF760 0.77 -0.6 745,092 - GFF760 0.77 -0.2 745,092 - GFF760 0.77 -0.0 745,105 + GFF760 0.80 +0.4 745,105 + GFF760 0.80 -0.6 745,110 + GFF760 0.80 +0.4 745,128 - GFF760 0.84 -0.5 745,128 - GFF760 0.84 -0.0 745,128 - GFF760 0.84 -0.1 745,128 - GFF760 0.84 -0.2 745,138 - GFF760 0.85 -1.1 745,153 - GFF760 0.88 -2.5 745,153 - GFF760 0.88 -0.7 745,155 - GFF760 0.88 +0.5 745,158 - GFF760 0.89 -0.2 745,158 - GFF760 0.89 +1.2 745,160 + GFF760 0.89 +0.5 745,160 + GFF760 0.89 +0.5 745,160 + GFF760 0.89 +0.9 745,160 + GFF760 0.89 -0.4 745,163 - GFF760 0.90 -0.9 745,163 - GFF760 0.90 +1.1 745,163 - GFF760 0.90 -0.4 745,168 - +1.2 745,168 - +0.9 745,168 - +0.3 745,174 + -0.7 745,176 + -0.9 745,186 + -0.6 745,191 - -0.3 745,202 + +1.7 745,202 + +0.1 745,207 + -1.5 745,317 - -1.8 745,317 - +1.0 745,351 - -0.6 745,357 - +1.0 745,374 + -0.3 745,377 - -2.3
Or see this region's nucleotide sequence