Strain Fitness in Sphingobium sp. HT1-2 around GFF719

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF717 and GFF718 are separated by 83 nucleotidesGFF718 and GFF719 are separated by 52 nucleotidesGFF719 and GFF720 are separated by 326 nucleotides GFF717 - 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192), at 709,811 to 711,070 GFF717 GFF718 - hypothetical protein, at 711,154 to 711,576 GFF718 GFF719 - hypothetical protein, at 711,629 to 712,138 GFF719 GFF720 - outer membrane protein-like, at 712,465 to 713,025 GFF720 Position (kb) 711 712 713Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 710.634 kb on + strand, within GFF717at 710.642 kb on - strand, within GFF717at 710.679 kb on + strand, within GFF717at 710.687 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.693 kb on + strand, within GFF717at 710.700 kb on - strand, within GFF717at 710.700 kb on - strand, within GFF717at 710.701 kb on - strand, within GFF717at 710.711 kb on - strand, within GFF717at 710.711 kb on - strand, within GFF717at 710.719 kb on + strand, within GFF717at 710.719 kb on + strand, within GFF717at 710.721 kb on - strand, within GFF717at 710.727 kb on - strand, within GFF717at 710.764 kb on + strand, within GFF717at 710.790 kb on + strand, within GFF717at 710.798 kb on - strand, within GFF717at 710.835 kb on + strand, within GFF717at 710.836 kb on + strand, within GFF717at 710.841 kb on + strand, within GFF717at 710.841 kb on + strand, within GFF717at 710.841 kb on + strand, within GFF717at 710.849 kb on - strand, within GFF717at 710.851 kb on + strand, within GFF717at 710.864 kb on - strand, within GFF717at 710.881 kb on + strand, within GFF717at 710.897 kb on - strand, within GFF717at 710.902 kb on - strand, within GFF717at 710.955 kb on - strandat 710.964 kb on + strandat 710.982 kb on + strandat 710.990 kb on - strandat 710.990 kb on - strandat 710.990 kb on - strandat 711.049 kb on + strandat 711.064 kb on + strandat 711.119 kb on - strandat 711.202 kb on + strand, within GFF718at 711.207 kb on + strand, within GFF718at 711.207 kb on + strand, within GFF718at 711.227 kb on + strand, within GFF718at 711.254 kb on + strand, within GFF718at 711.254 kb on + strand, within GFF718at 711.262 kb on - strand, within GFF718at 711.335 kb on - strand, within GFF718at 711.336 kb on + strand, within GFF718at 711.356 kb on + strand, within GFF718at 711.359 kb on + strand, within GFF718at 711.361 kb on + strand, within GFF718at 711.373 kb on + strand, within GFF718at 711.381 kb on - strand, within GFF718at 711.390 kb on - strand, within GFF718at 711.400 kb on - strand, within GFF718at 711.402 kb on - strand, within GFF718at 711.402 kb on - strand, within GFF718at 711.480 kb on + strand, within GFF718at 711.480 kb on - strand, within GFF718at 711.481 kb on + strand, within GFF718at 711.607 kb on + strandat 711.758 kb on + strand, within GFF719at 711.812 kb on + strand, within GFF719at 712.010 kb on + strand, within GFF719at 712.028 kb on + strand, within GFF719at 712.053 kb on + strand, within GFF719at 712.282 kb on - strandat 712.310 kb on - strandat 712.423 kb on - strandat 712.429 kb on + strandat 712.453 kb on + strandat 712.476 kb on + strandat 712.562 kb on - strand, within GFF720at 712.590 kb on + strand, within GFF720at 712.616 kb on + strand, within GFF720at 712.660 kb on - strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.669 kb on + strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.677 kb on - strand, within GFF720at 712.684 kb on + strand, within GFF720at 712.685 kb on + strand, within GFF720at 712.698 kb on - strand, within GFF720at 712.740 kb on + strand, within GFF720at 712.750 kb on + strand, within GFF720at 712.759 kb on - strand, within GFF720at 712.759 kb on - strand, within GFF720at 712.759 kb on - strand, within GFF720at 712.782 kb on - strand, within GFF720at 712.818 kb on + strand, within GFF720at 712.826 kb on - strand, within GFF720at 712.833 kb on + strand, within GFF720at 712.841 kb on - strand, within GFF720at 712.841 kb on - strand, within GFF720at 712.841 kb on - strand, within GFF720at 712.857 kb on + strand, within GFF720at 712.859 kb on + strand, within GFF720at 712.867 kb on - strand, within GFF720at 712.867 kb on - strand, within GFF720at 712.867 kb on - strand, within GFF720at 712.872 kb on - strand, within GFF720at 712.884 kb on - strand, within GFF720at 712.897 kb on - strand, within GFF720at 712.905 kb on + strand, within GFF720at 712.905 kb on + strand, within GFF720at 712.913 kb on - strand, within GFF720at 712.945 kb on - strand, within GFF720at 712.957 kb on - strand, within GFF720at 713.042 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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710,634 + GFF717 0.65 -0.4
710,642 - GFF717 0.66 -2.7
710,679 + GFF717 0.69 -0.4
710,687 + GFF717 0.70 -1.1
710,693 + GFF717 0.70 -1.1
710,693 + GFF717 0.70 -0.0
710,693 + GFF717 0.70 +1.9
710,700 - GFF717 0.71 -0.1
710,700 - GFF717 0.71 +0.8
710,701 - GFF717 0.71 -0.5
710,711 - GFF717 0.71 +0.6
710,711 - GFF717 0.71 +0.5
710,719 + GFF717 0.72 -0.1
710,719 + GFF717 0.72 +1.7
710,721 - GFF717 0.72 +0.9
710,727 - GFF717 0.73 +0.6
710,764 + GFF717 0.76 -0.7
710,790 + GFF717 0.78 -1.4
710,798 - GFF717 0.78 -1.7
710,835 + GFF717 0.81 -0.7
710,836 + GFF717 0.81 +2.1
710,841 + GFF717 0.82 +1.5
710,841 + GFF717 0.82 +2.3
710,841 + GFF717 0.82 -0.6
710,849 - GFF717 0.82 +0.2
710,851 + GFF717 0.83 -0.1
710,864 - GFF717 0.84 +0.5
710,881 + GFF717 0.85 +1.3
710,897 - GFF717 0.86 -1.9
710,902 - GFF717 0.87 +0.7
710,955 - +0.5
710,964 + +0.4
710,982 + +0.5
710,990 - -0.4
710,990 - +1.3
710,990 - -0.2
711,049 + +0.4
711,064 + -1.4
711,119 - -1.2
711,202 + GFF718 0.11 -3.4
711,207 + GFF718 0.13 +0.0
711,207 + GFF718 0.13 +0.3
711,227 + GFF718 0.17 -0.3
711,254 + GFF718 0.24 +0.4
711,254 + GFF718 0.24 -0.6
711,262 - GFF718 0.26 +0.2
711,335 - GFF718 0.43 -0.1
711,336 + GFF718 0.43 +0.7
711,356 + GFF718 0.48 -1.4
711,359 + GFF718 0.48 +0.8
711,361 + GFF718 0.49 -0.2
711,373 + GFF718 0.52 +1.7
711,381 - GFF718 0.54 -0.2
711,390 - GFF718 0.56 +0.1
711,400 - GFF718 0.58 -1.6
711,402 - GFF718 0.59 -0.2
711,402 - GFF718 0.59 +0.6
711,480 + GFF718 0.77 -1.2
711,480 - GFF718 0.77 -0.2
711,481 + GFF718 0.77 -0.3
711,607 + -0.4
711,758 + GFF719 0.25 +0.6
711,812 + GFF719 0.36 -0.5
712,010 + GFF719 0.75 -2.2
712,028 + GFF719 0.78 -1.3
712,053 + GFF719 0.83 -1.1
712,282 - -0.0
712,310 - +0.7
712,423 - -0.3
712,429 + -1.8
712,453 + -0.2
712,476 + -1.7
712,562 - GFF720 0.17 -0.3
712,590 + GFF720 0.22 +0.6
712,616 + GFF720 0.27 +0.5
712,660 - GFF720 0.35 -2.2
712,669 + GFF720 0.36 +0.1
712,669 + GFF720 0.36 -0.1
712,669 + GFF720 0.36 +1.9
712,677 - GFF720 0.38 -0.9
712,677 - GFF720 0.38 +0.3
712,677 - GFF720 0.38 -0.2
712,677 - GFF720 0.38 -0.8
712,684 + GFF720 0.39 -3.0
712,685 + GFF720 0.39 +0.6
712,698 - GFF720 0.42 +0.3
712,740 + GFF720 0.49 -0.5
712,750 + GFF720 0.51 -0.0
712,759 - GFF720 0.52 -1.0
712,759 - GFF720 0.52 -0.9
712,759 - GFF720 0.52 -1.7
712,782 - GFF720 0.57 -2.2
712,818 + GFF720 0.63 +1.5
712,826 - GFF720 0.64 +0.7
712,833 + GFF720 0.66 -0.1
712,841 - GFF720 0.67 +0.8
712,841 - GFF720 0.67 +0.9
712,841 - GFF720 0.67 +0.5
712,857 + GFF720 0.70 +0.1
712,859 + GFF720 0.70 +0.9
712,867 - GFF720 0.72 +0.2
712,867 - GFF720 0.72 +0.9
712,867 - GFF720 0.72 +0.5
712,872 - GFF720 0.73 -0.4
712,884 - GFF720 0.75 +1.1
712,897 - GFF720 0.77 +0.6
712,905 + GFF720 0.78 +0.4
712,905 + GFF720 0.78 +1.1
712,913 - GFF720 0.80 -0.1
712,945 - GFF720 0.86 -1.0
712,957 - GFF720 0.88 -0.0
713,042 - -0.5

Or see this region's nucleotide sequence