Strain Fitness in Sphingobium sp. HT1-2 around GFF666

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF664 and GFF665 are separated by 66 nucleotidesGFF665 and GFF666 are separated by 248 nucleotidesGFF666 and GFF667 overlap by 4 nucleotidesGFF667 and GFF668 are separated by 65 nucleotides GFF664 - Phosphate:acyl-ACP acyltransferase PlsX (EC 2.3.1.n2), at 661,863 to 662,888 GFF664 GFF665 - LSU ribosomal protein L32p @ LSU ribosomal protein L32p, zinc-dependent, at 662,955 to 663,092 GFF665 GFF666 - hypothetical protein, at 663,341 to 663,769 GFF666 GFF667 - Hypothetical metal-binding enzyme, YcbL homolog, at 663,766 to 664,422 GFF667 GFF668 - Rrf2 family transcriptional regulator, at 664,488 to 664,913 GFF668 Position (kb) 663 664Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 662.925 kb on + strandat 662.933 kb on - strandat 662.933 kb on - strandat 662.940 kb on - strandat 663.278 kb on + strandat 663.325 kb on + strandat 663.330 kb on - strandat 663.331 kb on + strandat 663.357 kb on + strandat 663.357 kb on + strandat 663.357 kb on + strandat 663.357 kb on + strandat 663.365 kb on - strandat 663.365 kb on - strandat 663.365 kb on - strandat 663.365 kb on - strandat 663.365 kb on - strandat 663.365 kb on - strandat 663.365 kb on - strandat 663.365 kb on - strandat 663.365 kb on - strandat 663.365 kb on - strandat 663.368 kb on + strandat 663.375 kb on - strandat 663.376 kb on - strandat 663.376 kb on - strandat 663.376 kb on - strandat 663.401 kb on + strand, within GFF666at 663.401 kb on + strand, within GFF666at 663.437 kb on + strand, within GFF666at 663.473 kb on + strand, within GFF666at 663.480 kb on + strand, within GFF666at 663.555 kb on + strand, within GFF666at 663.555 kb on + strand, within GFF666at 663.581 kb on + strand, within GFF666at 663.596 kb on - strand, within GFF666at 663.615 kb on + strand, within GFF666at 663.623 kb on - strand, within GFF666at 663.709 kb on + strand, within GFF666at 663.711 kb on + strand, within GFF666at 663.746 kb on + strandat 663.783 kb on + strandat 663.876 kb on + strand, within GFF667at 663.944 kb on + strand, within GFF667at 663.944 kb on + strand, within GFF667at 663.944 kb on + strand, within GFF667at 663.952 kb on - strand, within GFF667at 663.952 kb on - strand, within GFF667at 663.957 kb on - strand, within GFF667at 663.990 kb on + strand, within GFF667at 663.999 kb on - strand, within GFF667at 664.013 kb on - strand, within GFF667at 664.017 kb on + strand, within GFF667at 664.025 kb on - strand, within GFF667at 664.035 kb on + strand, within GFF667at 664.035 kb on - strand, within GFF667at 664.045 kb on - strand, within GFF667at 664.055 kb on + strand, within GFF667at 664.070 kb on + strand, within GFF667at 664.092 kb on + strand, within GFF667at 664.114 kb on + strand, within GFF667at 664.114 kb on + strand, within GFF667at 664.115 kb on + strand, within GFF667at 664.123 kb on - strand, within GFF667at 664.148 kb on + strand, within GFF667at 664.209 kb on - strand, within GFF667at 664.209 kb on - strand, within GFF667at 664.218 kb on + strand, within GFF667at 664.227 kb on + strand, within GFF667at 664.236 kb on + strand, within GFF667at 664.240 kb on - strand, within GFF667at 664.273 kb on + strand, within GFF667at 664.276 kb on - strand, within GFF667at 664.278 kb on + strand, within GFF667at 664.281 kb on - strand, within GFF667at 664.281 kb on - strand, within GFF667at 664.299 kb on - strand, within GFF667at 664.343 kb on + strand, within GFF667at 664.349 kb on + strand, within GFF667at 664.349 kb on + strand, within GFF667at 664.349 kb on + strand, within GFF667at 664.351 kb on + strand, within GFF667at 664.351 kb on + strand, within GFF667at 664.351 kb on + strand, within GFF667at 664.357 kb on - strandat 664.357 kb on - strandat 664.357 kb on - strandat 664.390 kb on + strandat 664.397 kb on - strandat 664.408 kb on - strandat 664.408 kb on - strandat 664.460 kb on - strandat 664.486 kb on + strandat 664.490 kb on + strandat 664.490 kb on + strandat 664.490 kb on + strandat 664.491 kb on + strandat 664.491 kb on + strandat 664.497 kb on + strandat 664.497 kb on + strandat 664.522 kb on + strandat 664.523 kb on + strandat 664.523 kb on + strandat 664.523 kb on + strandat 664.533 kb on + strand, within GFF668at 664.549 kb on - strand, within GFF668at 664.568 kb on + strand, within GFF668at 664.568 kb on + strand, within GFF668at 664.568 kb on + strand, within GFF668at 664.568 kb on + strand, within GFF668at 664.573 kb on + strand, within GFF668at 664.576 kb on - strand, within GFF668at 664.576 kb on - strand, within GFF668at 664.576 kb on - strand, within GFF668at 664.576 kb on - strand, within GFF668at 664.576 kb on - strand, within GFF668at 664.583 kb on + strand, within GFF668at 664.654 kb on - strand, within GFF668at 664.681 kb on - strand, within GFF668at 664.690 kb on + strand, within GFF668at 664.703 kb on - strand, within GFF668at 664.718 kb on + strand, within GFF668at 664.747 kb on + strand, within GFF668at 664.755 kb on - strand, within GFF668

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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662,925 + +1.0
662,933 - -2.3
662,933 - -1.2
662,940 - +1.1
663,278 + -0.6
663,325 + +1.1
663,330 - -0.7
663,331 + +0.3
663,357 + +0.4
663,357 + +0.1
663,357 + -0.1
663,357 + -0.4
663,365 - -0.9
663,365 - -2.2
663,365 - +0.3
663,365 - -0.0
663,365 - -0.3
663,365 - -0.6
663,365 - +1.3
663,365 - -2.4
663,365 - -0.9
663,365 - +2.2
663,368 + +0.3
663,375 - +1.0
663,376 - -1.3
663,376 - -0.1
663,376 - -0.8
663,401 + GFF666 0.14 -1.3
663,401 + GFF666 0.14 +0.5
663,437 + GFF666 0.22 +0.4
663,473 + GFF666 0.31 -0.2
663,480 + GFF666 0.32 -0.1
663,555 + GFF666 0.50 +1.3
663,555 + GFF666 0.50 -0.1
663,581 + GFF666 0.56 -0.3
663,596 - GFF666 0.59 +0.2
663,615 + GFF666 0.64 -1.1
663,623 - GFF666 0.66 +0.6
663,709 + GFF666 0.86 +0.6
663,711 + GFF666 0.86 -0.2
663,746 + +0.3
663,783 + -1.2
663,876 + GFF667 0.17 +0.2
663,944 + GFF667 0.27 +0.4
663,944 + GFF667 0.27 +0.4
663,944 + GFF667 0.27 +1.0
663,952 - GFF667 0.28 +0.7
663,952 - GFF667 0.28 +0.8
663,957 - GFF667 0.29 -1.0
663,990 + GFF667 0.34 -1.3
663,999 - GFF667 0.35 +0.4
664,013 - GFF667 0.38 +0.3
664,017 + GFF667 0.38 +0.8
664,025 - GFF667 0.39 +0.5
664,035 + GFF667 0.41 -1.0
664,035 - GFF667 0.41 -1.8
664,045 - GFF667 0.42 -0.5
664,055 + GFF667 0.44 +0.1
664,070 + GFF667 0.46 +0.9
664,092 + GFF667 0.50 +0.5
664,114 + GFF667 0.53 -0.3
664,114 + GFF667 0.53 -0.2
664,115 + GFF667 0.53 +0.8
664,123 - GFF667 0.54 -0.2
664,148 + GFF667 0.58 +0.0
664,209 - GFF667 0.67 +0.6
664,209 - GFF667 0.67 -0.3
664,218 + GFF667 0.69 +0.3
664,227 + GFF667 0.70 +0.9
664,236 + GFF667 0.72 +0.1
664,240 - GFF667 0.72 +0.4
664,273 + GFF667 0.77 -0.3
664,276 - GFF667 0.78 -1.0
664,278 + GFF667 0.78 +1.4
664,281 - GFF667 0.78 -0.4
664,281 - GFF667 0.78 +1.0
664,299 - GFF667 0.81 -1.0
664,343 + GFF667 0.88 -1.9
664,349 + GFF667 0.89 -0.0
664,349 + GFF667 0.89 +0.6
664,349 + GFF667 0.89 -1.3
664,351 + GFF667 0.89 -0.7
664,351 + GFF667 0.89 +0.2
664,351 + GFF667 0.89 +0.3
664,357 - -0.6
664,357 - +0.9
664,357 - +1.2
664,390 + -0.1
664,397 - -0.8
664,408 - -0.0
664,408 - -0.3
664,460 - -1.2
664,486 + -1.3
664,490 + -0.5
664,490 + +0.0
664,490 + -1.5
664,491 + -2.5
664,491 + -0.2
664,497 + -0.0
664,497 + -0.8
664,522 + -0.6
664,523 + -1.5
664,523 + -2.9
664,523 + -1.4
664,533 + GFF668 0.11 +0.6
664,549 - GFF668 0.14 +0.5
664,568 + GFF668 0.19 -1.2
664,568 + GFF668 0.19 -2.0
664,568 + GFF668 0.19 +0.6
664,568 + GFF668 0.19 -1.9
664,573 + GFF668 0.20 -3.1
664,576 - GFF668 0.21 +0.1
664,576 - GFF668 0.21 -1.0
664,576 - GFF668 0.21 +0.3
664,576 - GFF668 0.21 +1.0
664,576 - GFF668 0.21 -1.7
664,583 + GFF668 0.22 -1.0
664,654 - GFF668 0.39 -0.5
664,681 - GFF668 0.45 +0.4
664,690 + GFF668 0.47 -0.9
664,703 - GFF668 0.50 +0.6
664,718 + GFF668 0.54 -0.3
664,747 + GFF668 0.61 +0.5
664,755 - GFF668 0.63 +1.1

Or see this region's nucleotide sequence