Strain Fitness in Sphingobium sp. HT1-2 around GFF646

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF645 and GFF646 are separated by 143 nucleotidesGFF646 and GFF647 are separated by 138 nucleotidesGFF647 and GFF648 overlap by 4 nucleotides GFF645 - Polyhydroxyalkanoic acid synthase, at 642,960 to 644,699 GFF645 GFF646 - Aspartate aminotransferase (EC 2.6.1.1), at 644,843 to 646,054 GFF646 GFF647 - hypothetical protein, at 646,193 to 646,669 GFF647 GFF648 - Uncharacterized aldehyde oxidase, 2Fe-2S subunit, at 646,666 to 647,217 GFF648 Position (kb) 644 645 646 647Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 643.846 kb on - strand, within GFF645at 643.846 kb on - strand, within GFF645at 643.846 kb on - strand, within GFF645at 643.846 kb on - strand, within GFF645at 643.846 kb on - strand, within GFF645at 643.846 kb on - strand, within GFF645at 643.848 kb on + strand, within GFF645at 643.855 kb on + strand, within GFF645at 643.855 kb on + strand, within GFF645at 643.857 kb on - strand, within GFF645at 643.857 kb on - strand, within GFF645at 643.900 kb on - strand, within GFF645at 643.914 kb on - strand, within GFF645at 643.938 kb on + strand, within GFF645at 643.939 kb on + strand, within GFF645at 643.946 kb on - strand, within GFF645at 643.946 kb on - strand, within GFF645at 643.963 kb on - strand, within GFF645at 643.980 kb on - strand, within GFF645at 644.007 kb on + strand, within GFF645at 644.008 kb on + strand, within GFF645at 644.023 kb on - strand, within GFF645at 644.044 kb on + strand, within GFF645at 644.071 kb on + strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.079 kb on - strand, within GFF645at 644.092 kb on + strand, within GFF645at 644.094 kb on + strand, within GFF645at 644.102 kb on - strand, within GFF645at 644.104 kb on + strand, within GFF645at 644.104 kb on + strand, within GFF645at 644.104 kb on + strand, within GFF645at 644.114 kb on + strand, within GFF645at 644.129 kb on + strand, within GFF645at 644.129 kb on + strand, within GFF645at 644.131 kb on - strand, within GFF645at 644.131 kb on - strand, within GFF645at 644.131 kb on - strand, within GFF645at 644.133 kb on - strand, within GFF645at 644.135 kb on + strand, within GFF645at 644.141 kb on - strand, within GFF645at 644.142 kb on - strand, within GFF645at 644.142 kb on - strand, within GFF645at 644.143 kb on - strand, within GFF645at 644.159 kb on + strand, within GFF645at 644.167 kb on - strand, within GFF645at 644.196 kb on + strand, within GFF645at 644.196 kb on + strand, within GFF645at 644.204 kb on - strand, within GFF645at 644.218 kb on + strand, within GFF645at 644.226 kb on - strand, within GFF645at 644.241 kb on + strand, within GFF645at 644.249 kb on + strand, within GFF645at 644.249 kb on + strand, within GFF645at 644.262 kb on + strand, within GFF645at 644.267 kb on + strand, within GFF645at 644.271 kb on + strand, within GFF645at 644.288 kb on + strand, within GFF645at 644.334 kb on + strand, within GFF645at 644.350 kb on - strand, within GFF645at 644.354 kb on - strand, within GFF645at 644.390 kb on + strand, within GFF645at 644.396 kb on - strand, within GFF645at 644.396 kb on - strand, within GFF645at 644.411 kb on + strand, within GFF645at 644.418 kb on + strand, within GFF645at 644.421 kb on - strand, within GFF645at 644.426 kb on - strand, within GFF645at 644.426 kb on - strand, within GFF645at 644.426 kb on - strand, within GFF645at 644.428 kb on - strand, within GFF645at 644.434 kb on - strand, within GFF645at 644.445 kb on - strand, within GFF645at 644.519 kb on - strand, within GFF645at 644.532 kb on + strandat 644.535 kb on + strandat 644.543 kb on - strandat 644.543 kb on - strandat 644.568 kb on + strandat 644.568 kb on + strandat 644.573 kb on + strandat 644.581 kb on - strandat 644.581 kb on - strandat 644.608 kb on - strandat 644.618 kb on - strandat 644.625 kb on + strandat 644.625 kb on + strandat 644.625 kb on + strandat 644.625 kb on + strandat 644.633 kb on - strandat 644.633 kb on - strandat 644.633 kb on - strandat 644.633 kb on - strandat 644.633 kb on - strandat 644.633 kb on - strandat 644.654 kb on + strandat 644.661 kb on + strandat 644.661 kb on + strandat 644.669 kb on - strandat 644.676 kb on + strandat 644.712 kb on + strandat 644.732 kb on - strandat 644.795 kb on - strandat 644.812 kb on - strandat 644.812 kb on - strandat 644.812 kb on - strandat 644.950 kb on + strandat 644.950 kb on + strandat 644.956 kb on + strandat 644.961 kb on + strandat 644.961 kb on + strandat 644.964 kb on - strandat 644.969 kb on - strand, within GFF646at 645.001 kb on + strand, within GFF646at 645.033 kb on - strand, within GFF646at 645.034 kb on - strand, within GFF646at 645.035 kb on - strand, within GFF646at 645.043 kb on + strand, within GFF646at 645.044 kb on - strand, within GFF646at 645.051 kb on - strand, within GFF646at 645.078 kb on - strand, within GFF646at 645.131 kb on + strand, within GFF646at 645.163 kb on - strand, within GFF646at 645.235 kb on - strand, within GFF646at 645.257 kb on + strand, within GFF646at 645.272 kb on + strand, within GFF646at 645.322 kb on + strand, within GFF646at 645.322 kb on + strand, within GFF646at 645.322 kb on + strand, within GFF646at 645.323 kb on + strand, within GFF646at 645.337 kb on - strand, within GFF646at 645.350 kb on - strand, within GFF646at 645.399 kb on - strand, within GFF646at 645.439 kb on + strand, within GFF646at 645.439 kb on + strand, within GFF646at 645.447 kb on - strand, within GFF646at 645.447 kb on - strand, within GFF646at 645.447 kb on - strand, within GFF646at 645.448 kb on + strand, within GFF646at 645.459 kb on - strand, within GFF646at 645.488 kb on + strand, within GFF646at 645.498 kb on + strand, within GFF646at 645.506 kb on - strand, within GFF646at 645.506 kb on - strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.553 kb on + strand, within GFF646at 645.556 kb on - strand, within GFF646at 645.561 kb on - strand, within GFF646at 645.561 kb on - strand, within GFF646at 645.561 kb on - strand, within GFF646at 645.596 kb on - strand, within GFF646at 645.596 kb on - strand, within GFF646at 645.632 kb on + strand, within GFF646at 645.679 kb on + strand, within GFF646at 645.697 kb on - strand, within GFF646at 645.701 kb on + strand, within GFF646at 645.714 kb on - strand, within GFF646at 645.731 kb on + strand, within GFF646at 645.741 kb on - strand, within GFF646at 645.817 kb on - strand, within GFF646at 645.832 kb on - strand, within GFF646at 645.875 kb on + strand, within GFF646at 645.903 kb on + strand, within GFF646at 645.925 kb on + strand, within GFF646at 645.935 kb on + strandat 645.943 kb on - strandat 645.943 kb on - strandat 645.943 kb on - strandat 645.957 kb on - strandat 645.960 kb on + strandat 645.963 kb on - strandat 646.109 kb on - strandat 646.136 kb on + strandat 646.136 kb on + strandat 646.161 kb on + strandat 646.162 kb on + strandat 646.168 kb on + strandat 646.169 kb on - strandat 646.174 kb on - strandat 646.218 kb on - strandat 646.231 kb on - strandat 646.244 kb on - strand, within GFF647at 646.279 kb on - strand, within GFF647at 646.280 kb on + strand, within GFF647at 646.280 kb on + strand, within GFF647at 646.288 kb on - strand, within GFF647at 646.291 kb on - strand, within GFF647at 646.324 kb on + strand, within GFF647at 646.342 kb on - strand, within GFF647at 646.360 kb on + strand, within GFF647at 646.374 kb on + strand, within GFF647at 646.375 kb on + strand, within GFF647at 646.375 kb on - strand, within GFF647at 646.375 kb on - strand, within GFF647at 646.382 kb on - strand, within GFF647at 646.382 kb on - strand, within GFF647at 646.386 kb on + strand, within GFF647at 646.386 kb on - strand, within GFF647at 646.416 kb on - strand, within GFF647at 646.427 kb on + strand, within GFF647at 646.435 kb on + strand, within GFF647at 646.441 kb on + strand, within GFF647at 646.448 kb on + strand, within GFF647at 646.456 kb on - strand, within GFF647at 646.475 kb on - strand, within GFF647at 646.506 kb on + strand, within GFF647at 646.511 kb on + strand, within GFF647at 646.511 kb on + strand, within GFF647at 646.514 kb on - strand, within GFF647at 646.519 kb on - strand, within GFF647at 646.519 kb on - strand, within GFF647at 646.519 kb on - strand, within GFF647at 646.519 kb on - strand, within GFF647at 646.524 kb on - strand, within GFF647at 646.524 kb on - strand, within GFF647at 646.532 kb on + strand, within GFF647at 646.540 kb on - strand, within GFF647at 646.540 kb on - strand, within GFF647at 646.546 kb on + strand, within GFF647at 646.553 kb on + strand, within GFF647at 646.561 kb on - strand, within GFF647at 646.613 kb on + strand, within GFF647at 646.613 kb on + strand, within GFF647at 646.619 kb on - strand, within GFF647at 646.627 kb on - strandat 646.638 kb on + strandat 646.652 kb on - strandat 646.659 kb on + strandat 646.679 kb on - strandat 646.704 kb on - strandat 646.719 kb on - strandat 646.723 kb on + strand, within GFF648at 646.723 kb on + strand, within GFF648at 646.723 kb on + strand, within GFF648at 646.728 kb on + strand, within GFF648at 646.728 kb on + strand, within GFF648at 646.728 kb on + strand, within GFF648at 646.728 kb on + strand, within GFF648at 646.728 kb on + strand, within GFF648at 646.728 kb on + strand, within GFF648at 646.728 kb on + strand, within GFF648at 646.728 kb on + strand, within GFF648at 646.731 kb on - strand, within GFF648at 646.731 kb on - strand, within GFF648at 646.736 kb on - strand, within GFF648at 646.736 kb on - strand, within GFF648at 646.736 kb on - strand, within GFF648at 646.736 kb on - strand, within GFF648at 646.736 kb on - strand, within GFF648at 646.736 kb on - strand, within GFF648at 646.736 kb on - strand, within GFF648at 646.736 kb on - strand, within GFF648at 646.736 kb on - strand, within GFF648at 646.736 kb on - strand, within GFF648at 646.756 kb on - strand, within GFF648at 646.828 kb on + strand, within GFF648at 647.014 kb on - strand, within GFF648at 647.036 kb on - strand, within GFF648

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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643,846 - GFF645 0.51 -1.2
643,846 - GFF645 0.51 -1.0
643,846 - GFF645 0.51 -2.7
643,846 - GFF645 0.51 +0.5
643,846 - GFF645 0.51 -1.8
643,846 - GFF645 0.51 -1.4
643,848 + GFF645 0.51 -1.3
643,855 + GFF645 0.51 -0.1
643,855 + GFF645 0.51 -1.0
643,857 - GFF645 0.52 -3.9
643,857 - GFF645 0.52 -1.2
643,900 - GFF645 0.54 -0.5
643,914 - GFF645 0.55 -0.7
643,938 + GFF645 0.56 -0.6
643,939 + GFF645 0.56 -1.7
643,946 - GFF645 0.57 -0.5
643,946 - GFF645 0.57 -1.9
643,963 - GFF645 0.58 -1.8
643,980 - GFF645 0.59 -0.6
644,007 + GFF645 0.60 -0.8
644,008 + GFF645 0.60 -1.9
644,023 - GFF645 0.61 -1.6
644,044 + GFF645 0.62 -1.9
644,071 + GFF645 0.64 -0.0
644,079 - GFF645 0.64 +0.3
644,079 - GFF645 0.64 -2.2
644,079 - GFF645 0.64 -1.3
644,079 - GFF645 0.64 -2.5
644,079 - GFF645 0.64 -0.3
644,079 - GFF645 0.64 -2.2
644,092 + GFF645 0.65 -1.7
644,094 + GFF645 0.65 -1.4
644,102 - GFF645 0.66 -1.1
644,104 + GFF645 0.66 -0.9
644,104 + GFF645 0.66 -0.9
644,104 + GFF645 0.66 -1.2
644,114 + GFF645 0.66 -0.4
644,129 + GFF645 0.67 -1.6
644,129 + GFF645 0.67 -0.8
644,131 - GFF645 0.67 +0.9
644,131 - GFF645 0.67 -1.5
644,131 - GFF645 0.67 -1.6
644,133 - GFF645 0.67 -1.2
644,135 + GFF645 0.68 -1.2
644,141 - GFF645 0.68 -1.8
644,142 - GFF645 0.68 -2.8
644,142 - GFF645 0.68 -0.6
644,143 - GFF645 0.68 -0.5
644,159 + GFF645 0.69 -0.5
644,167 - GFF645 0.69 -0.4
644,196 + GFF645 0.71 -1.4
644,196 + GFF645 0.71 -3.2
644,204 - GFF645 0.71 -1.6
644,218 + GFF645 0.72 -2.7
644,226 - GFF645 0.73 -1.9
644,241 + GFF645 0.74 -0.6
644,249 + GFF645 0.74 -0.4
644,249 + GFF645 0.74 -0.1
644,262 + GFF645 0.75 -0.9
644,267 + GFF645 0.75 -1.5
644,271 + GFF645 0.75 -0.5
644,288 + GFF645 0.76 -3.2
644,334 + GFF645 0.79 -1.0
644,350 - GFF645 0.80 -3.3
644,354 - GFF645 0.80 -1.7
644,390 + GFF645 0.82 -3.3
644,396 - GFF645 0.83 -2.6
644,396 - GFF645 0.83 -0.8
644,411 + GFF645 0.83 -2.7
644,418 + GFF645 0.84 -2.1
644,421 - GFF645 0.84 +1.4
644,426 - GFF645 0.84 -0.5
644,426 - GFF645 0.84 -2.9
644,426 - GFF645 0.84 -1.3
644,428 - GFF645 0.84 -0.6
644,434 - GFF645 0.85 -2.2
644,445 - GFF645 0.85 -0.1
644,519 - GFF645 0.90 -1.1
644,532 + -1.9
644,535 + -1.5
644,543 - -2.4
644,543 - -2.6
644,568 + -1.6
644,568 + -1.8
644,573 + -2.4
644,581 - -2.8
644,581 - +0.5
644,608 - -0.9
644,618 - -1.3
644,625 + -1.9
644,625 + -1.2
644,625 + -1.1
644,625 + -0.5
644,633 - -0.2
644,633 - -0.3
644,633 - -0.9
644,633 - -2.6
644,633 - -0.9
644,633 - -1.6
644,654 + -0.1
644,661 + +0.2
644,661 + -0.5
644,669 - -3.7
644,676 + -0.9
644,712 + -0.1
644,732 - -0.2
644,795 - +0.4
644,812 - -1.4
644,812 - -0.2
644,812 - +0.9
644,950 + -1.9
644,950 + -1.4
644,956 + -0.5
644,961 + -1.6
644,961 + -0.7
644,964 - -3.5
644,969 - GFF646 0.10 -1.4
645,001 + GFF646 0.13 -2.9
645,033 - GFF646 0.16 -1.9
645,034 - GFF646 0.16 -0.0
645,035 - GFF646 0.16 -1.6
645,043 + GFF646 0.17 -1.2
645,044 - GFF646 0.17 -2.5
645,051 - GFF646 0.17 -3.0
645,078 - GFF646 0.19 -1.0
645,131 + GFF646 0.24 -1.1
645,163 - GFF646 0.26 -2.2
645,235 - GFF646 0.32 -1.9
645,257 + GFF646 0.34 -1.0
645,272 + GFF646 0.35 -0.6
645,322 + GFF646 0.40 -2.5
645,322 + GFF646 0.40 -1.9
645,322 + GFF646 0.40 -0.3
645,323 + GFF646 0.40 -2.0
645,337 - GFF646 0.41 -0.5
645,350 - GFF646 0.42 -1.2
645,399 - GFF646 0.46 -0.9
645,439 + GFF646 0.49 -1.7
645,439 + GFF646 0.49 -2.9
645,447 - GFF646 0.50 -2.0
645,447 - GFF646 0.50 -1.1
645,447 - GFF646 0.50 -2.6
645,448 + GFF646 0.50 -2.8
645,459 - GFF646 0.51 -1.4
645,488 + GFF646 0.53 -0.5
645,498 + GFF646 0.54 -3.1
645,506 - GFF646 0.55 -2.8
645,506 - GFF646 0.55 -1.2
645,553 + GFF646 0.59 -3.6
645,553 + GFF646 0.59 -2.6
645,553 + GFF646 0.59 +1.7
645,553 + GFF646 0.59 -1.2
645,553 + GFF646 0.59 -0.6
645,553 + GFF646 0.59 -1.4
645,553 + GFF646 0.59 -0.9
645,556 - GFF646 0.59 -1.3
645,561 - GFF646 0.59 -2.1
645,561 - GFF646 0.59 -0.7
645,561 - GFF646 0.59 -0.2
645,596 - GFF646 0.62 -0.9
645,596 - GFF646 0.62 -2.1
645,632 + GFF646 0.65 -2.9
645,679 + GFF646 0.69 -1.4
645,697 - GFF646 0.70 -1.3
645,701 + GFF646 0.71 -0.7
645,714 - GFF646 0.72 -0.6
645,731 + GFF646 0.73 +0.3
645,741 - GFF646 0.74 -1.3
645,817 - GFF646 0.80 -1.6
645,832 - GFF646 0.82 -0.7
645,875 + GFF646 0.85 +0.3
645,903 + GFF646 0.87 -0.7
645,925 + GFF646 0.89 -0.5
645,935 + -1.9
645,943 - -2.4
645,943 - -1.9
645,943 - -3.4
645,957 - -1.6
645,960 + -2.5
645,963 - -3.3
646,109 - -0.9
646,136 + -1.7
646,136 + -1.0
646,161 + -0.2
646,162 + +1.0
646,168 + +1.2
646,169 - +1.7
646,174 - -1.5
646,218 - +0.6
646,231 - -0.5
646,244 - GFF647 0.11 +1.2
646,279 - GFF647 0.18 +0.4
646,280 + GFF647 0.18 +0.6
646,280 + GFF647 0.18 -1.4
646,288 - GFF647 0.20 -2.0
646,291 - GFF647 0.21 +1.5
646,324 + GFF647 0.27 +0.1
646,342 - GFF647 0.31 -0.5
646,360 + GFF647 0.35 -0.9
646,374 + GFF647 0.38 -0.5
646,375 + GFF647 0.38 -0.5
646,375 - GFF647 0.38 +0.6
646,375 - GFF647 0.38 -0.7
646,382 - GFF647 0.40 -0.3
646,382 - GFF647 0.40 -0.1
646,386 + GFF647 0.40 -1.3
646,386 - GFF647 0.40 +0.1
646,416 - GFF647 0.47 +0.1
646,427 + GFF647 0.49 +0.5
646,435 + GFF647 0.51 +1.1
646,441 + GFF647 0.52 -1.0
646,448 + GFF647 0.53 +1.1
646,456 - GFF647 0.55 -0.5
646,475 - GFF647 0.59 +1.6
646,506 + GFF647 0.66 -0.0
646,511 + GFF647 0.67 -0.4
646,511 + GFF647 0.67 +1.1
646,514 - GFF647 0.67 -0.8
646,519 - GFF647 0.68 +0.2
646,519 - GFF647 0.68 +0.3
646,519 - GFF647 0.68 +1.1
646,519 - GFF647 0.68 +1.1
646,524 - GFF647 0.69 -0.0
646,524 - GFF647 0.69 -0.1
646,532 + GFF647 0.71 -1.7
646,540 - GFF647 0.73 +0.6
646,540 - GFF647 0.73 +0.5
646,546 + GFF647 0.74 +1.1
646,553 + GFF647 0.75 -0.3
646,561 - GFF647 0.77 +0.4
646,613 + GFF647 0.88 -0.1
646,613 + GFF647 0.88 +1.8
646,619 - GFF647 0.89 +0.0
646,627 - -1.3
646,638 + -0.0
646,652 - +0.4
646,659 + -0.8
646,679 - +0.5
646,704 - +1.0
646,719 - +0.5
646,723 + GFF648 0.10 -0.8
646,723 + GFF648 0.10 -0.2
646,723 + GFF648 0.10 -0.2
646,728 + GFF648 0.11 -0.3
646,728 + GFF648 0.11 -0.3
646,728 + GFF648 0.11 -0.3
646,728 + GFF648 0.11 +0.3
646,728 + GFF648 0.11 +1.0
646,728 + GFF648 0.11 -0.8
646,728 + GFF648 0.11 +1.0
646,728 + GFF648 0.11 -0.3
646,731 - GFF648 0.12 +0.1
646,731 - GFF648 0.12 -1.7
646,736 - GFF648 0.13 -0.6
646,736 - GFF648 0.13 +1.4
646,736 - GFF648 0.13 +0.4
646,736 - GFF648 0.13 -0.5
646,736 - GFF648 0.13 -0.5
646,736 - GFF648 0.13 +0.3
646,736 - GFF648 0.13 +0.2
646,736 - GFF648 0.13 -1.4
646,736 - GFF648 0.13 +1.2
646,736 - GFF648 0.13 +0.1
646,756 - GFF648 0.16 -2.2
646,828 + GFF648 0.29 +1.1
647,014 - GFF648 0.63 -0.2
647,036 - GFF648 0.67 -0.5

Or see this region's nucleotide sequence