Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF632 and GFF633 are separated by 109 nucleotides GFF633 and GFF634 are separated by 20 nucleotides GFF634 and GFF635 are separated by 169 nucleotides
GFF632 - hypothetical protein, at 629,492 to 630,370
GFF632
GFF633 - Homoserine dehydrogenase (EC 1.1.1.3), at 630,480 to 631,784
GFF633
GFF634 - hypothetical protein, at 631,805 to 632,293
GFF634
GFF635 - Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11), at 632,463 to 633,446
GFF635
Position (kb) 630
631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 629.484 kb on + strand at 629.493 kb on - strand at 629.513 kb on + strand at 629.521 kb on - strand at 629.521 kb on - strand at 629.629 kb on + strand, within GFF632 at 629.632 kb on - strand, within GFF632 at 629.634 kb on + strand, within GFF632 at 629.651 kb on - strand, within GFF632 at 629.704 kb on + strand, within GFF632 at 629.704 kb on + strand, within GFF632 at 629.712 kb on - strand, within GFF632 at 629.712 kb on - strand, within GFF632 at 629.719 kb on + strand, within GFF632 at 629.719 kb on + strand, within GFF632 at 629.719 kb on + strand, within GFF632 at 629.719 kb on + strand, within GFF632 at 629.727 kb on - strand, within GFF632 at 629.727 kb on - strand, within GFF632 at 629.727 kb on - strand, within GFF632 at 629.727 kb on - strand, within GFF632 at 629.746 kb on - strand, within GFF632 at 629.749 kb on + strand, within GFF632 at 629.750 kb on - strand, within GFF632 at 629.780 kb on - strand, within GFF632 at 629.869 kb on + strand, within GFF632 at 629.936 kb on + strand, within GFF632 at 629.936 kb on + strand, within GFF632 at 629.944 kb on - strand, within GFF632 at 629.956 kb on + strand, within GFF632 at 629.960 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.971 kb on + strand, within GFF632 at 629.976 kb on + strand, within GFF632 at 629.979 kb on - strand, within GFF632 at 629.979 kb on - strand, within GFF632 at 629.979 kb on - strand, within GFF632 at 629.979 kb on - strand, within GFF632 at 629.979 kb on - strand, within GFF632 at 629.981 kb on + strand, within GFF632 at 630.029 kb on - strand, within GFF632 at 630.031 kb on + strand, within GFF632 at 630.144 kb on - strand, within GFF632 at 630.177 kb on - strand, within GFF632 at 630.203 kb on + strand, within GFF632 at 630.203 kb on + strand, within GFF632 at 630.217 kb on + strand, within GFF632 at 630.217 kb on + strand, within GFF632 at 630.222 kb on + strand, within GFF632 at 630.222 kb on + strand, within GFF632 at 630.222 kb on + strand, within GFF632 at 630.227 kb on + strand, within GFF632 at 630.230 kb on - strand, within GFF632 at 630.254 kb on + strand, within GFF632 at 630.254 kb on + strand, within GFF632 at 630.254 kb on + strand, within GFF632 at 630.276 kb on + strand, within GFF632 at 630.284 kb on + strand at 630.284 kb on + strand at 630.292 kb on - strand at 630.292 kb on - strand at 630.292 kb on - strand at 630.328 kb on + strand at 630.484 kb on - strand at 630.496 kb on + strand at 630.496 kb on + strand at 630.496 kb on + strand at 630.496 kb on + strand at 630.496 kb on + strand at 630.537 kb on + strand at 630.547 kb on - strand at 630.560 kb on + strand at 630.560 kb on + strand at 630.560 kb on + strand at 630.568 kb on - strand at 630.568 kb on - strand at 630.574 kb on - strand at 630.609 kb on - strand at 630.704 kb on - strand, within GFF633 at 630.751 kb on + strand, within GFF633 at 630.751 kb on + strand, within GFF633 at 630.751 kb on + strand, within GFF633 at 630.751 kb on + strand, within GFF633 at 630.756 kb on + strand, within GFF633 at 630.756 kb on + strand, within GFF633 at 630.756 kb on + strand, within GFF633 at 630.756 kb on + strand, within GFF633 at 630.756 kb on + strand, within GFF633 at 630.759 kb on - strand, within GFF633 at 630.764 kb on - strand, within GFF633 at 630.764 kb on - strand, within GFF633 at 630.764 kb on - strand, within GFF633 at 630.764 kb on - strand, within GFF633 at 630.764 kb on - strand, within GFF633 at 630.764 kb on - strand, within GFF633 at 630.764 kb on - strand, within GFF633 at 630.765 kb on - strand, within GFF633 at 630.766 kb on + strand, within GFF633 at 630.842 kb on - strand, within GFF633 at 630.843 kb on - strand, within GFF633 at 630.880 kb on + strand, within GFF633 at 630.914 kb on + strand, within GFF633 at 630.914 kb on + strand, within GFF633 at 630.922 kb on - strand, within GFF633 at 630.922 kb on - strand, within GFF633 at 630.922 kb on - strand, within GFF633 at 630.926 kb on + strand, within GFF633 at 630.950 kb on + strand, within GFF633 at 630.971 kb on + strand, within GFF633 at 631.001 kb on - strand, within GFF633 at 631.008 kb on - strand, within GFF633 at 631.024 kb on + strand, within GFF633 at 631.037 kb on + strand, within GFF633 at 631.053 kb on + strand, within GFF633 at 631.053 kb on + strand, within GFF633 at 631.053 kb on + strand, within GFF633 at 631.060 kb on + strand, within GFF633 at 631.122 kb on + strand, within GFF633 at 631.157 kb on - strand, within GFF633 at 631.157 kb on - strand, within GFF633 at 631.249 kb on + strand, within GFF633 at 631.252 kb on - strand, within GFF633 at 631.277 kb on + strand, within GFF633 at 631.277 kb on + strand, within GFF633 at 631.277 kb on + strand, within GFF633 at 631.277 kb on + strand, within GFF633 at 631.290 kb on + strand, within GFF633 at 631.305 kb on - strand, within GFF633 at 631.336 kb on - strand, within GFF633 at 631.340 kb on + strand, within GFF633 at 631.412 kb on - strand, within GFF633 at 631.419 kb on - strand, within GFF633 at 631.420 kb on + strand, within GFF633 at 631.428 kb on - strand, within GFF633 at 631.442 kb on + strand, within GFF633 at 631.469 kb on - strand, within GFF633 at 631.552 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.560 kb on + strand, within GFF633 at 631.568 kb on - strand, within GFF633 at 631.568 kb on - strand, within GFF633 at 631.568 kb on - strand, within GFF633 at 631.568 kb on - strand, within GFF633 at 631.568 kb on - strand, within GFF633 at 631.630 kb on + strand, within GFF633 at 631.645 kb on + strand, within GFF633 at 631.650 kb on + strand, within GFF633 at 631.653 kb on - strand, within GFF633 at 631.653 kb on - strand, within GFF633 at 631.653 kb on - strand, within GFF633 at 631.655 kb on + strand at 631.695 kb on + strand at 631.729 kb on - strand at 631.746 kb on - strand at 631.748 kb on + strand at 631.764 kb on + strand at 631.768 kb on + strand at 631.772 kb on - strand at 631.798 kb on + strand at 631.803 kb on + strand at 631.803 kb on + strand at 631.803 kb on + strand at 631.803 kb on + strand at 631.803 kb on + strand at 631.803 kb on + strand at 631.808 kb on + strand at 631.808 kb on + strand at 631.808 kb on + strand at 631.808 kb on + strand at 631.811 kb on - strand at 631.811 kb on - strand at 631.811 kb on - strand at 631.811 kb on - strand at 631.811 kb on - strand at 631.811 kb on - strand at 631.811 kb on - strand at 631.816 kb on - strand at 631.816 kb on - strand at 631.816 kb on - strand at 631.816 kb on - strand at 631.849 kb on - strand at 631.851 kb on + strand at 631.891 kb on - strand, within GFF634 at 631.903 kb on + strand, within GFF634 at 631.922 kb on - strand, within GFF634 at 631.958 kb on + strand, within GFF634 at 631.958 kb on + strand, within GFF634 at 631.966 kb on - strand, within GFF634 at 632.006 kb on + strand, within GFF634 at 632.038 kb on - strand, within GFF634 at 632.041 kb on + strand, within GFF634 at 632.078 kb on - strand, within GFF634 at 632.088 kb on - strand, within GFF634 at 632.088 kb on - strand, within GFF634 at 632.088 kb on - strand, within GFF634 at 632.113 kb on - strand, within GFF634 at 632.153 kb on + strand, within GFF634 at 632.215 kb on - strand, within GFF634 at 632.275 kb on + strand at 632.275 kb on + strand at 632.283 kb on - strand at 632.283 kb on - strand at 632.283 kb on - strand at 632.283 kb on - strand at 632.285 kb on + strand at 632.285 kb on + strand at 632.291 kb on - strand at 632.293 kb on - strand at 632.293 kb on - strand at 632.293 kb on - strand at 632.307 kb on - strand at 632.310 kb on + strand at 632.312 kb on + strand at 632.312 kb on + strand at 632.337 kb on + strand at 632.345 kb on - strand at 632.379 kb on - strand at 632.424 kb on + strand at 632.432 kb on - strand at 632.437 kb on + strand at 632.439 kb on + strand at 632.442 kb on + strand at 632.449 kb on + strand at 632.466 kb on + strand at 632.466 kb on + strand at 632.466 kb on + strand at 632.474 kb on - strand at 632.474 kb on - strand at 632.479 kb on - strand at 632.511 kb on - strand at 632.550 kb on - strand at 632.610 kb on + strand, within GFF635 at 632.640 kb on + strand, within GFF635 at 632.678 kb on + strand, within GFF635 at 632.678 kb on + strand, within GFF635 at 632.681 kb on + strand, within GFF635 at 632.694 kb on + strand, within GFF635 at 632.726 kb on + strand, within GFF635 at 632.755 kb on + strand, within GFF635
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 629,484 + -1.0 629,493 - -0.5 629,513 + +0.6 629,521 - +0.1 629,521 - +0.3 629,629 + GFF632 0.16 +0.2 629,632 - GFF632 0.16 +1.4 629,634 + GFF632 0.16 -0.5 629,651 - GFF632 0.18 -0.1 629,704 + GFF632 0.24 +0.3 629,704 + GFF632 0.24 +0.1 629,712 - GFF632 0.25 -1.1 629,712 - GFF632 0.25 +0.6 629,719 + GFF632 0.26 -0.4 629,719 + GFF632 0.26 +0.3 629,719 + GFF632 0.26 -1.0 629,719 + GFF632 0.26 +1.0 629,727 - GFF632 0.27 -0.5 629,727 - GFF632 0.27 +0.6 629,727 - GFF632 0.27 +0.8 629,727 - GFF632 0.27 -2.0 629,746 - GFF632 0.29 +0.2 629,749 + GFF632 0.29 +0.1 629,750 - GFF632 0.29 -0.5 629,780 - GFF632 0.33 +0.0 629,869 + GFF632 0.43 -0.7 629,936 + GFF632 0.51 +1.8 629,936 + GFF632 0.51 +0.5 629,944 - GFF632 0.51 -0.4 629,956 + GFF632 0.53 -1.4 629,960 + GFF632 0.53 -0.9 629,971 + GFF632 0.54 +0.1 629,971 + GFF632 0.54 -0.1 629,971 + GFF632 0.54 -0.2 629,971 + GFF632 0.54 -1.6 629,971 + GFF632 0.54 -0.2 629,971 + GFF632 0.54 +0.5 629,971 + GFF632 0.54 -1.0 629,971 + GFF632 0.54 +0.3 629,971 + GFF632 0.54 +0.3 629,971 + GFF632 0.54 -0.9 629,971 + GFF632 0.54 -1.9 629,971 + GFF632 0.54 -0.0 629,976 + GFF632 0.55 +1.2 629,979 - GFF632 0.55 +0.4 629,979 - GFF632 0.55 +0.6 629,979 - GFF632 0.55 -0.2 629,979 - GFF632 0.55 -1.3 629,979 - GFF632 0.55 -0.3 629,981 + GFF632 0.56 -0.5 630,029 - GFF632 0.61 +0.0 630,031 + GFF632 0.61 +0.3 630,144 - GFF632 0.74 +0.2 630,177 - GFF632 0.78 -0.5 630,203 + GFF632 0.81 +0.1 630,203 + GFF632 0.81 -0.1 630,217 + GFF632 0.82 +0.5 630,217 + GFF632 0.82 +0.1 630,222 + GFF632 0.83 +0.4 630,222 + GFF632 0.83 -0.1 630,222 + GFF632 0.83 +0.3 630,227 + GFF632 0.84 +0.8 630,230 - GFF632 0.84 -1.1 630,254 + GFF632 0.87 +0.3 630,254 + GFF632 0.87 +0.2 630,254 + GFF632 0.87 +2.0 630,276 + GFF632 0.89 +2.0 630,284 + -0.6 630,284 + -0.1 630,292 - +0.6 630,292 - +1.3 630,292 - -0.3 630,328 + +2.5 630,484 - -2.5 630,496 + -0.5 630,496 + -3.6 630,496 + -2.4 630,496 + -2.3 630,496 + -0.7 630,537 + -2.2 630,547 - +0.1 630,560 + -2.3 630,560 + +0.3 630,560 + -2.5 630,568 - -2.7 630,568 - -3.6 630,574 - -3.7 630,609 - -1.2 630,704 - GFF633 0.17 -2.0 630,751 + GFF633 0.21 -0.5 630,751 + GFF633 0.21 -0.5 630,751 + GFF633 0.21 -1.2 630,751 + GFF633 0.21 +0.3 630,756 + GFF633 0.21 -2.6 630,756 + GFF633 0.21 -2.2 630,756 + GFF633 0.21 -2.3 630,756 + GFF633 0.21 -0.7 630,756 + GFF633 0.21 -2.3 630,759 - GFF633 0.21 -2.3 630,764 - GFF633 0.22 -0.5 630,764 - GFF633 0.22 -2.7 630,764 - GFF633 0.22 -2.4 630,764 - GFF633 0.22 -0.7 630,764 - GFF633 0.22 +0.1 630,764 - GFF633 0.22 -1.5 630,764 - GFF633 0.22 -2.0 630,765 - GFF633 0.22 -2.3 630,766 + GFF633 0.22 -2.1 630,842 - GFF633 0.28 -2.6 630,843 - GFF633 0.28 -3.2 630,880 + GFF633 0.31 -1.6 630,914 + GFF633 0.33 -2.6 630,914 + GFF633 0.33 -2.2 630,922 - GFF633 0.34 -2.2 630,922 - GFF633 0.34 -2.6 630,922 - GFF633 0.34 -0.9 630,926 + GFF633 0.34 -3.1 630,950 + GFF633 0.36 -3.1 630,971 + GFF633 0.38 -0.6 631,001 - GFF633 0.40 -2.4 631,008 - GFF633 0.40 -2.7 631,024 + GFF633 0.42 -2.1 631,037 + GFF633 0.43 -2.3 631,053 + GFF633 0.44 -2.9 631,053 + GFF633 0.44 -1.9 631,053 + GFF633 0.44 +0.1 631,060 + GFF633 0.44 -2.3 631,122 + GFF633 0.49 -1.0 631,157 - GFF633 0.52 -2.3 631,157 - GFF633 0.52 -2.4 631,249 + GFF633 0.59 -0.5 631,252 - GFF633 0.59 -1.9 631,277 + GFF633 0.61 -3.0 631,277 + GFF633 0.61 -1.4 631,277 + GFF633 0.61 -1.5 631,277 + GFF633 0.61 -1.6 631,290 + GFF633 0.62 -2.4 631,305 - GFF633 0.63 -2.2 631,336 - GFF633 0.66 -0.4 631,340 + GFF633 0.66 -2.2 631,412 - GFF633 0.71 -1.2 631,419 - GFF633 0.72 -0.0 631,420 + GFF633 0.72 -1.9 631,428 - GFF633 0.73 -1.0 631,442 + GFF633 0.74 -2.4 631,469 - GFF633 0.76 -2.1 631,552 + GFF633 0.82 -3.4 631,560 + GFF633 0.83 -1.5 631,560 + GFF633 0.83 -0.5 631,560 + GFF633 0.83 -0.8 631,560 + GFF633 0.83 -3.4 631,560 + GFF633 0.83 -2.9 631,560 + GFF633 0.83 -2.6 631,560 + GFF633 0.83 -2.5 631,560 + GFF633 0.83 -2.3 631,560 + GFF633 0.83 -1.7 631,560 + GFF633 0.83 -1.9 631,560 + GFF633 0.83 -1.9 631,560 + GFF633 0.83 -2.2 631,568 - GFF633 0.83 -2.2 631,568 - GFF633 0.83 -2.6 631,568 - GFF633 0.83 -2.9 631,568 - GFF633 0.83 -1.9 631,568 - GFF633 0.83 -3.4 631,630 + GFF633 0.88 -3.7 631,645 + GFF633 0.89 -2.9 631,650 + GFF633 0.90 -2.9 631,653 - GFF633 0.90 -2.0 631,653 - GFF633 0.90 -1.8 631,653 - GFF633 0.90 -2.9 631,655 + -0.3 631,695 + -1.4 631,729 - -0.2 631,746 - -3.4 631,748 + -1.7 631,764 + -2.2 631,768 + -1.4 631,772 - -3.1 631,798 + -0.0 631,803 + -1.4 631,803 + -0.1 631,803 + -0.4 631,803 + -0.6 631,803 + +0.8 631,803 + -0.1 631,808 + -1.7 631,808 + -1.7 631,808 + -0.6 631,808 + +0.5 631,811 - -1.4 631,811 - +0.3 631,811 - -1.3 631,811 - -0.8 631,811 - +1.7 631,811 - -0.7 631,811 - +0.7 631,816 - -0.5 631,816 - +2.0 631,816 - +0.9 631,816 - +1.7 631,849 - -1.2 631,851 + +0.2 631,891 - GFF634 0.18 -0.3 631,903 + GFF634 0.20 +0.0 631,922 - GFF634 0.24 -0.2 631,958 + GFF634 0.31 +1.3 631,958 + GFF634 0.31 +0.8 631,966 - GFF634 0.33 +0.3 632,006 + GFF634 0.41 -1.0 632,038 - GFF634 0.48 -1.8 632,041 + GFF634 0.48 +0.3 632,078 - GFF634 0.56 -0.2 632,088 - GFF634 0.58 -0.3 632,088 - GFF634 0.58 -0.5 632,088 - GFF634 0.58 +0.3 632,113 - GFF634 0.63 -2.0 632,153 + GFF634 0.71 +0.3 632,215 - GFF634 0.84 -1.5 632,275 + +0.6 632,275 + +0.4 632,283 - -0.2 632,283 - -0.3 632,283 - +0.3 632,283 - +0.5 632,285 + +0.6 632,285 + -0.5 632,291 - +1.5 632,293 - +0.1 632,293 - +0.7 632,293 - -0.4 632,307 - +0.2 632,310 + +1.3 632,312 + +1.0 632,312 + +0.1 632,337 + -2.6 632,345 - -0.9 632,379 - -1.0 632,424 + -1.1 632,432 - -1.3 632,437 + +0.8 632,439 + +1.2 632,442 + +0.2 632,449 + -0.2 632,466 + +0.2 632,466 + +0.7 632,466 + +1.3 632,474 - +0.8 632,474 - -0.0 632,479 - +0.2 632,511 - +0.8 632,550 - +1.9 632,610 + GFF635 0.15 +0.0 632,640 + GFF635 0.18 +0.4 632,678 + GFF635 0.22 -0.5 632,678 + GFF635 0.22 +0.2 632,681 + GFF635 0.22 +0.9 632,694 + GFF635 0.23 -0.9 632,726 + GFF635 0.27 +0.6 632,755 + GFF635 0.30 +0.1
Or see this region's nucleotide sequence