Strain Fitness in Sphingobium sp. HT1-2 around GFF632

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF630 and GFF631 are separated by 71 nucleotidesGFF631 and GFF632 are separated by 249 nucleotidesGFF632 and GFF633 are separated by 109 nucleotides GFF630 - MotA/TolQ/ExbB proton channel family protein, at 627,753 to 628,508 GFF630 GFF631 - hypothetical protein, at 628,580 to 629,242 GFF631 GFF632 - hypothetical protein, at 629,492 to 630,370 GFF632 GFF633 - Homoserine dehydrogenase (EC 1.1.1.3), at 630,480 to 631,784 GFF633 Position (kb) 629 630 631Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 628.648 kb on - strand, within GFF631at 628.721 kb on - strand, within GFF631at 628.744 kb on - strand, within GFF631at 628.770 kb on - strand, within GFF631at 628.887 kb on - strand, within GFF631at 629.071 kb on - strand, within GFF631at 629.170 kb on - strand, within GFF631at 629.170 kb on - strand, within GFF631at 629.170 kb on - strand, within GFF631at 629.170 kb on - strand, within GFF631at 629.170 kb on - strand, within GFF631at 629.232 kb on + strandat 629.235 kb on - strandat 629.240 kb on - strandat 629.240 kb on - strandat 629.240 kb on - strandat 629.240 kb on - strandat 629.255 kb on + strandat 629.263 kb on - strandat 629.263 kb on - strandat 629.263 kb on - strandat 629.263 kb on - strandat 629.265 kb on + strandat 629.265 kb on - strandat 629.282 kb on + strandat 629.314 kb on - strandat 629.319 kb on - strandat 629.324 kb on - strandat 629.324 kb on - strandat 629.332 kb on + strandat 629.332 kb on + strandat 629.340 kb on - strandat 629.340 kb on - strandat 629.346 kb on - strandat 629.351 kb on + strandat 629.367 kb on - strandat 629.377 kb on - strandat 629.401 kb on - strandat 629.421 kb on + strandat 629.431 kb on + strandat 629.436 kb on - strandat 629.484 kb on + strandat 629.493 kb on - strandat 629.513 kb on + strandat 629.521 kb on - strandat 629.521 kb on - strandat 629.629 kb on + strand, within GFF632at 629.632 kb on - strand, within GFF632at 629.634 kb on + strand, within GFF632at 629.651 kb on - strand, within GFF632at 629.704 kb on + strand, within GFF632at 629.704 kb on + strand, within GFF632at 629.712 kb on - strand, within GFF632at 629.712 kb on - strand, within GFF632at 629.719 kb on + strand, within GFF632at 629.719 kb on + strand, within GFF632at 629.719 kb on + strand, within GFF632at 629.719 kb on + strand, within GFF632at 629.727 kb on - strand, within GFF632at 629.727 kb on - strand, within GFF632at 629.727 kb on - strand, within GFF632at 629.727 kb on - strand, within GFF632at 629.746 kb on - strand, within GFF632at 629.749 kb on + strand, within GFF632at 629.750 kb on - strand, within GFF632at 629.780 kb on - strand, within GFF632at 629.869 kb on + strand, within GFF632at 629.936 kb on + strand, within GFF632at 629.936 kb on + strand, within GFF632at 629.944 kb on - strand, within GFF632at 629.956 kb on + strand, within GFF632at 629.960 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.976 kb on + strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.981 kb on + strand, within GFF632at 630.029 kb on - strand, within GFF632at 630.031 kb on + strand, within GFF632at 630.144 kb on - strand, within GFF632at 630.177 kb on - strand, within GFF632at 630.203 kb on + strand, within GFF632at 630.203 kb on + strand, within GFF632at 630.217 kb on + strand, within GFF632at 630.217 kb on + strand, within GFF632at 630.222 kb on + strand, within GFF632at 630.222 kb on + strand, within GFF632at 630.222 kb on + strand, within GFF632at 630.227 kb on + strand, within GFF632at 630.230 kb on - strand, within GFF632at 630.254 kb on + strand, within GFF632at 630.254 kb on + strand, within GFF632at 630.254 kb on + strand, within GFF632at 630.276 kb on + strand, within GFF632at 630.284 kb on + strandat 630.284 kb on + strandat 630.292 kb on - strandat 630.292 kb on - strandat 630.292 kb on - strandat 630.328 kb on + strandat 630.484 kb on - strandat 630.496 kb on + strandat 630.496 kb on + strandat 630.496 kb on + strandat 630.496 kb on + strandat 630.496 kb on + strandat 630.537 kb on + strandat 630.547 kb on - strandat 630.560 kb on + strandat 630.560 kb on + strandat 630.560 kb on + strandat 630.568 kb on - strandat 630.568 kb on - strandat 630.574 kb on - strandat 630.609 kb on - strandat 630.704 kb on - strand, within GFF633at 630.751 kb on + strand, within GFF633at 630.751 kb on + strand, within GFF633at 630.751 kb on + strand, within GFF633at 630.751 kb on + strand, within GFF633at 630.756 kb on + strand, within GFF633at 630.756 kb on + strand, within GFF633at 630.756 kb on + strand, within GFF633at 630.756 kb on + strand, within GFF633at 630.756 kb on + strand, within GFF633at 630.759 kb on - strand, within GFF633at 630.764 kb on - strand, within GFF633at 630.764 kb on - strand, within GFF633at 630.764 kb on - strand, within GFF633at 630.764 kb on - strand, within GFF633at 630.764 kb on - strand, within GFF633at 630.764 kb on - strand, within GFF633at 630.764 kb on - strand, within GFF633at 630.765 kb on - strand, within GFF633at 630.766 kb on + strand, within GFF633at 630.842 kb on - strand, within GFF633at 630.843 kb on - strand, within GFF633at 630.880 kb on + strand, within GFF633at 630.914 kb on + strand, within GFF633at 630.914 kb on + strand, within GFF633at 630.922 kb on - strand, within GFF633at 630.922 kb on - strand, within GFF633at 630.922 kb on - strand, within GFF633at 630.926 kb on + strand, within GFF633at 630.950 kb on + strand, within GFF633at 630.971 kb on + strand, within GFF633at 631.001 kb on - strand, within GFF633at 631.008 kb on - strand, within GFF633at 631.024 kb on + strand, within GFF633at 631.037 kb on + strand, within GFF633at 631.053 kb on + strand, within GFF633at 631.053 kb on + strand, within GFF633at 631.053 kb on + strand, within GFF633at 631.060 kb on + strand, within GFF633at 631.122 kb on + strand, within GFF633at 631.157 kb on - strand, within GFF633at 631.157 kb on - strand, within GFF633at 631.249 kb on + strand, within GFF633at 631.252 kb on - strand, within GFF633at 631.277 kb on + strand, within GFF633at 631.277 kb on + strand, within GFF633at 631.277 kb on + strand, within GFF633at 631.277 kb on + strand, within GFF633at 631.290 kb on + strand, within GFF633at 631.305 kb on - strand, within GFF633at 631.336 kb on - strand, within GFF633at 631.340 kb on + strand, within GFF633

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
628,648 - GFF631 0.10 +1.3
628,721 - GFF631 0.21 +0.3
628,744 - GFF631 0.25 -2.0
628,770 - GFF631 0.29 +1.2
628,887 - GFF631 0.46 -0.0
629,071 - GFF631 0.74 +1.3
629,170 - GFF631 0.89 +0.8
629,170 - GFF631 0.89 +1.3
629,170 - GFF631 0.89 +1.3
629,170 - GFF631 0.89 +1.6
629,170 - GFF631 0.89 -0.9
629,232 + +1.3
629,235 - -0.7
629,240 - -1.5
629,240 - -1.3
629,240 - -0.2
629,240 - +1.7
629,255 + +1.0
629,263 - -1.7
629,263 - +2.3
629,263 - +0.1
629,263 - +0.2
629,265 + +1.6
629,265 - -0.0
629,282 + +1.9
629,314 - +0.5
629,319 - -1.3
629,324 - -0.5
629,324 - +0.6
629,332 + +1.9
629,332 + -0.2
629,340 - +1.2
629,340 - +0.2
629,346 - -1.3
629,351 + +1.6
629,367 - -2.3
629,377 - -0.0
629,401 - +1.2
629,421 + -0.5
629,431 + +0.3
629,436 - +1.1
629,484 + -1.0
629,493 - -0.5
629,513 + +0.6
629,521 - +0.1
629,521 - +0.3
629,629 + GFF632 0.16 +0.2
629,632 - GFF632 0.16 +1.4
629,634 + GFF632 0.16 -0.5
629,651 - GFF632 0.18 -0.1
629,704 + GFF632 0.24 +0.3
629,704 + GFF632 0.24 +0.1
629,712 - GFF632 0.25 -1.1
629,712 - GFF632 0.25 +0.6
629,719 + GFF632 0.26 -0.4
629,719 + GFF632 0.26 +0.3
629,719 + GFF632 0.26 -1.0
629,719 + GFF632 0.26 +1.0
629,727 - GFF632 0.27 -0.5
629,727 - GFF632 0.27 +0.6
629,727 - GFF632 0.27 +0.8
629,727 - GFF632 0.27 -2.0
629,746 - GFF632 0.29 +0.2
629,749 + GFF632 0.29 +0.1
629,750 - GFF632 0.29 -0.5
629,780 - GFF632 0.33 +0.0
629,869 + GFF632 0.43 -0.7
629,936 + GFF632 0.51 +1.8
629,936 + GFF632 0.51 +0.5
629,944 - GFF632 0.51 -0.4
629,956 + GFF632 0.53 -1.4
629,960 + GFF632 0.53 -0.9
629,971 + GFF632 0.54 +0.1
629,971 + GFF632 0.54 -0.1
629,971 + GFF632 0.54 -0.2
629,971 + GFF632 0.54 -1.6
629,971 + GFF632 0.54 -0.2
629,971 + GFF632 0.54 +0.5
629,971 + GFF632 0.54 -1.0
629,971 + GFF632 0.54 +0.3
629,971 + GFF632 0.54 +0.3
629,971 + GFF632 0.54 -0.9
629,971 + GFF632 0.54 -1.9
629,971 + GFF632 0.54 -0.0
629,976 + GFF632 0.55 +1.2
629,979 - GFF632 0.55 +0.4
629,979 - GFF632 0.55 +0.6
629,979 - GFF632 0.55 -0.2
629,979 - GFF632 0.55 -1.3
629,979 - GFF632 0.55 -0.3
629,981 + GFF632 0.56 -0.5
630,029 - GFF632 0.61 +0.0
630,031 + GFF632 0.61 +0.3
630,144 - GFF632 0.74 +0.2
630,177 - GFF632 0.78 -0.5
630,203 + GFF632 0.81 +0.1
630,203 + GFF632 0.81 -0.1
630,217 + GFF632 0.82 +0.5
630,217 + GFF632 0.82 +0.1
630,222 + GFF632 0.83 +0.4
630,222 + GFF632 0.83 -0.1
630,222 + GFF632 0.83 +0.3
630,227 + GFF632 0.84 +0.8
630,230 - GFF632 0.84 -1.1
630,254 + GFF632 0.87 +0.3
630,254 + GFF632 0.87 +0.2
630,254 + GFF632 0.87 +2.0
630,276 + GFF632 0.89 +2.0
630,284 + -0.6
630,284 + -0.1
630,292 - +0.6
630,292 - +1.3
630,292 - -0.3
630,328 + +2.5
630,484 - -2.5
630,496 + -0.5
630,496 + -3.6
630,496 + -2.4
630,496 + -2.3
630,496 + -0.7
630,537 + -2.2
630,547 - +0.1
630,560 + -2.3
630,560 + +0.3
630,560 + -2.5
630,568 - -2.7
630,568 - -3.6
630,574 - -3.7
630,609 - -1.2
630,704 - GFF633 0.17 -2.0
630,751 + GFF633 0.21 -0.5
630,751 + GFF633 0.21 -0.5
630,751 + GFF633 0.21 -1.2
630,751 + GFF633 0.21 +0.3
630,756 + GFF633 0.21 -2.6
630,756 + GFF633 0.21 -2.2
630,756 + GFF633 0.21 -2.3
630,756 + GFF633 0.21 -0.7
630,756 + GFF633 0.21 -2.3
630,759 - GFF633 0.21 -2.3
630,764 - GFF633 0.22 -0.5
630,764 - GFF633 0.22 -2.7
630,764 - GFF633 0.22 -2.4
630,764 - GFF633 0.22 -0.7
630,764 - GFF633 0.22 +0.1
630,764 - GFF633 0.22 -1.5
630,764 - GFF633 0.22 -2.0
630,765 - GFF633 0.22 -2.3
630,766 + GFF633 0.22 -2.1
630,842 - GFF633 0.28 -2.6
630,843 - GFF633 0.28 -3.2
630,880 + GFF633 0.31 -1.6
630,914 + GFF633 0.33 -2.6
630,914 + GFF633 0.33 -2.2
630,922 - GFF633 0.34 -2.2
630,922 - GFF633 0.34 -2.6
630,922 - GFF633 0.34 -0.9
630,926 + GFF633 0.34 -3.1
630,950 + GFF633 0.36 -3.1
630,971 + GFF633 0.38 -0.6
631,001 - GFF633 0.40 -2.4
631,008 - GFF633 0.40 -2.7
631,024 + GFF633 0.42 -2.1
631,037 + GFF633 0.43 -2.3
631,053 + GFF633 0.44 -2.9
631,053 + GFF633 0.44 -1.9
631,053 + GFF633 0.44 +0.1
631,060 + GFF633 0.44 -2.3
631,122 + GFF633 0.49 -1.0
631,157 - GFF633 0.52 -2.3
631,157 - GFF633 0.52 -2.4
631,249 + GFF633 0.59 -0.5
631,252 - GFF633 0.59 -1.9
631,277 + GFF633 0.61 -3.0
631,277 + GFF633 0.61 -1.4
631,277 + GFF633 0.61 -1.5
631,277 + GFF633 0.61 -1.6
631,290 + GFF633 0.62 -2.4
631,305 - GFF633 0.63 -2.2
631,336 - GFF633 0.66 -0.4
631,340 + GFF633 0.66 -2.2

Or see this region's nucleotide sequence