Strain Fitness in Sphingobium sp. HT1-2 around GFF631

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF629 and GFF630 are separated by 113 nucleotidesGFF630 and GFF631 are separated by 71 nucleotidesGFF631 and GFF632 are separated by 249 nucleotides GFF629 - Biopolymer transport protein ExbD/TolR, at 627,151 to 627,639 GFF629 GFF630 - MotA/TolQ/ExbB proton channel family protein, at 627,753 to 628,508 GFF630 GFF631 - hypothetical protein, at 628,580 to 629,242 GFF631 GFF632 - hypothetical protein, at 629,492 to 630,370 GFF632 Position (kb) 628 629 630Strain fitness (log2 ratio) -2 -1 0 1 2at 627.647 kb on + strandat 627.647 kb on + strandat 627.655 kb on - strandat 627.655 kb on - strandat 627.655 kb on - strandat 627.655 kb on - strandat 627.655 kb on - strandat 627.655 kb on - strandat 627.661 kb on - strandat 627.683 kb on + strandat 627.695 kb on + strandat 627.699 kb on - strandat 627.699 kb on - strandat 627.700 kb on + strandat 627.703 kb on - strandat 627.708 kb on - strandat 627.717 kb on - strandat 627.804 kb on - strandat 628.550 kb on - strandat 628.648 kb on - strand, within GFF631at 628.731 kb on - strand, within GFF631at 628.744 kb on - strand, within GFF631at 628.770 kb on - strand, within GFF631at 628.830 kb on - strand, within GFF631at 628.868 kb on - strand, within GFF631at 628.887 kb on - strand, within GFF631at 628.960 kb on - strand, within GFF631at 629.071 kb on - strand, within GFF631at 629.170 kb on - strand, within GFF631at 629.170 kb on - strand, within GFF631at 629.170 kb on - strand, within GFF631at 629.170 kb on - strand, within GFF631at 629.180 kb on - strandat 629.240 kb on - strandat 629.240 kb on - strandat 629.240 kb on - strandat 629.240 kb on - strandat 629.257 kb on + strandat 629.263 kb on - strandat 629.263 kb on - strandat 629.263 kb on - strandat 629.265 kb on - strandat 629.265 kb on - strandat 629.265 kb on - strandat 629.282 kb on + strandat 629.319 kb on - strandat 629.319 kb on - strandat 629.319 kb on - strandat 629.319 kb on - strandat 629.324 kb on - strandat 629.324 kb on - strandat 629.324 kb on - strandat 629.340 kb on - strandat 629.340 kb on - strandat 629.340 kb on - strandat 629.340 kb on - strandat 629.346 kb on - strandat 629.352 kb on + strandat 629.367 kb on - strandat 629.401 kb on - strandat 629.403 kb on + strandat 629.421 kb on + strandat 629.431 kb on + strandat 629.444 kb on + strandat 629.450 kb on + strandat 629.484 kb on + strandat 629.487 kb on - strandat 629.493 kb on - strandat 629.513 kb on + strandat 629.515 kb on + strandat 629.530 kb on - strandat 629.559 kb on - strandat 629.613 kb on - strand, within GFF632at 629.624 kb on + strand, within GFF632at 629.629 kb on + strand, within GFF632at 629.632 kb on - strand, within GFF632at 629.637 kb on - strand, within GFF632at 629.651 kb on - strand, within GFF632at 629.704 kb on + strand, within GFF632at 629.704 kb on + strand, within GFF632at 629.704 kb on + strand, within GFF632at 629.709 kb on + strand, within GFF632at 629.712 kb on - strand, within GFF632at 629.712 kb on - strand, within GFF632at 629.717 kb on - strand, within GFF632at 629.719 kb on + strand, within GFF632at 629.719 kb on + strand, within GFF632at 629.719 kb on + strand, within GFF632at 629.719 kb on + strand, within GFF632at 629.719 kb on + strand, within GFF632at 629.719 kb on + strand, within GFF632at 629.720 kb on + strand, within GFF632at 629.727 kb on - strand, within GFF632at 629.727 kb on - strand, within GFF632at 629.727 kb on - strand, within GFF632at 629.727 kb on - strand, within GFF632at 629.746 kb on - strand, within GFF632at 629.749 kb on + strand, within GFF632at 629.749 kb on + strand, within GFF632at 629.780 kb on - strand, within GFF632at 629.800 kb on - strand, within GFF632at 629.845 kb on + strand, within GFF632at 629.869 kb on + strand, within GFF632at 629.876 kb on - strand, within GFF632at 629.882 kb on + strand, within GFF632at 629.936 kb on + strand, within GFF632at 629.936 kb on + strand, within GFF632at 629.936 kb on + strand, within GFF632at 629.944 kb on - strand, within GFF632at 629.946 kb on + strand, within GFF632at 629.956 kb on + strand, within GFF632at 629.960 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.971 kb on + strand, within GFF632at 629.976 kb on + strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.979 kb on - strand, within GFF632at 629.981 kb on + strand, within GFF632at 630.028 kb on + strand, within GFF632at 630.029 kb on - strand, within GFF632at 630.031 kb on + strand, within GFF632at 630.058 kb on - strand, within GFF632at 630.061 kb on - strand, within GFF632at 630.138 kb on + strand, within GFF632at 630.144 kb on - strand, within GFF632at 630.151 kb on - strand, within GFF632at 630.153 kb on + strand, within GFF632at 630.156 kb on - strand, within GFF632at 630.159 kb on - strand, within GFF632at 630.177 kb on - strand, within GFF632at 630.198 kb on + strand, within GFF632at 630.203 kb on + strand, within GFF632at 630.203 kb on + strand, within GFF632at 630.217 kb on + strand, within GFF632at 630.217 kb on + strand, within GFF632at 630.222 kb on + strand, within GFF632at 630.222 kb on + strand, within GFF632at 630.222 kb on + strand, within GFF632at 630.225 kb on - strand, within GFF632at 630.227 kb on + strand, within GFF632at 630.230 kb on - strand, within GFF632at 630.230 kb on - strand, within GFF632at 630.230 kb on - strand, within GFF632at 630.230 kb on - strand, within GFF632

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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627,647 + -1.7
627,647 + +0.6
627,655 - -1.7
627,655 - -0.3
627,655 - -0.4
627,655 - -1.8
627,655 - -0.7
627,655 - -0.5
627,661 - +0.3
627,683 + +0.3
627,695 + +0.9
627,699 - -0.4
627,699 - -0.1
627,700 + +0.1
627,703 - -0.3
627,708 - +0.9
627,717 - +0.7
627,804 - +0.3
628,550 - -1.4
628,648 - GFF631 0.10 +1.2
628,731 - GFF631 0.23 -0.1
628,744 - GFF631 0.25 -2.1
628,770 - GFF631 0.29 +1.1
628,830 - GFF631 0.38 -1.3
628,868 - GFF631 0.43 +1.0
628,887 - GFF631 0.46 +0.7
628,960 - GFF631 0.57 -0.5
629,071 - GFF631 0.74 +1.2
629,170 - GFF631 0.89 -1.6
629,170 - GFF631 0.89 +0.7
629,170 - GFF631 0.89 -0.9
629,170 - GFF631 0.89 +0.6
629,180 - -0.1
629,240 - -1.6
629,240 - -1.4
629,240 - +1.3
629,240 - -0.3
629,257 + -0.4
629,263 - -1.8
629,263 - -0.0
629,263 - +0.1
629,265 - -1.1
629,265 - +0.9
629,265 - -1.4
629,282 + +1.8
629,319 - +0.7
629,319 - -1.4
629,319 - +0.3
629,319 - -0.6
629,324 - -0.6
629,324 - +0.0
629,324 - +0.5
629,340 - +1.6
629,340 - -0.2
629,340 - +1.1
629,340 - +0.1
629,346 - -1.4
629,352 + -0.7
629,367 - -2.4
629,401 - +1.1
629,403 + -0.6
629,421 + -0.6
629,431 + +0.2
629,444 + +0.4
629,450 + +0.4
629,484 + -1.1
629,487 - -1.4
629,493 - -0.6
629,513 + +0.5
629,515 + +0.4
629,530 - -0.4
629,559 - -0.8
629,613 - GFF632 0.14 -0.8
629,624 + GFF632 0.15 -1.6
629,629 + GFF632 0.16 +0.1
629,632 - GFF632 0.16 +1.3
629,637 - GFF632 0.16 +0.4
629,651 - GFF632 0.18 -0.2
629,704 + GFF632 0.24 +0.5
629,704 + GFF632 0.24 +0.2
629,704 + GFF632 0.24 -0.0
629,709 + GFF632 0.25 +0.8
629,712 - GFF632 0.25 -1.2
629,712 - GFF632 0.25 +0.5
629,717 - GFF632 0.26 -0.3
629,719 + GFF632 0.26 -0.5
629,719 + GFF632 0.26 +0.2
629,719 + GFF632 0.26 -1.4
629,719 + GFF632 0.26 -1.1
629,719 + GFF632 0.26 +0.9
629,719 + GFF632 0.26 +0.8
629,720 + GFF632 0.26 -1.8
629,727 - GFF632 0.27 -1.3
629,727 - GFF632 0.27 +0.5
629,727 - GFF632 0.27 +0.7
629,727 - GFF632 0.27 -2.1
629,746 - GFF632 0.29 +0.1
629,749 + GFF632 0.29 +0.0
629,749 + GFF632 0.29 +0.1
629,780 - GFF632 0.33 -0.1
629,800 - GFF632 0.35 -2.6
629,845 + GFF632 0.40 +0.2
629,869 + GFF632 0.43 -0.8
629,876 - GFF632 0.44 -2.1
629,882 + GFF632 0.44 -0.5
629,936 + GFF632 0.51 -0.6
629,936 + GFF632 0.51 +1.7
629,936 + GFF632 0.51 +0.4
629,944 - GFF632 0.51 -0.5
629,946 + GFF632 0.52 -0.4
629,956 + GFF632 0.53 -1.5
629,960 + GFF632 0.53 -1.0
629,971 + GFF632 0.54 -0.2
629,971 + GFF632 0.54 -0.3
629,971 + GFF632 0.54 -1.7
629,971 + GFF632 0.54 -0.3
629,971 + GFF632 0.54 +0.4
629,971 + GFF632 0.54 +0.6
629,971 + GFF632 0.54 +0.2
629,971 + GFF632 0.54 +0.2
629,971 + GFF632 0.54 -0.6
629,971 + GFF632 0.54 -1.0
629,971 + GFF632 0.54 -2.0
629,971 + GFF632 0.54 -0.1
629,971 + GFF632 0.54 +0.5
629,976 + GFF632 0.55 +1.1
629,979 - GFF632 0.55 -0.4
629,979 - GFF632 0.55 -0.8
629,979 - GFF632 0.55 +0.3
629,979 - GFF632 0.55 +0.5
629,979 - GFF632 0.55 -0.7
629,979 - GFF632 0.55 -0.3
629,979 - GFF632 0.55 -1.4
629,979 - GFF632 0.55 +0.9
629,979 - GFF632 0.55 -0.4
629,979 - GFF632 0.55 +0.1
629,981 + GFF632 0.56 -0.6
630,028 + GFF632 0.61 -0.1
630,029 - GFF632 0.61 -0.1
630,031 + GFF632 0.61 +0.2
630,058 - GFF632 0.64 -2.2
630,061 - GFF632 0.65 -0.5
630,138 + GFF632 0.73 -0.1
630,144 - GFF632 0.74 +0.1
630,151 - GFF632 0.75 -0.7
630,153 + GFF632 0.75 -0.3
630,156 - GFF632 0.76 +1.2
630,159 - GFF632 0.76 -2.0
630,177 - GFF632 0.78 -0.6
630,198 + GFF632 0.80 +0.4
630,203 + GFF632 0.81 -0.0
630,203 + GFF632 0.81 -0.2
630,217 + GFF632 0.82 +0.4
630,217 + GFF632 0.82 +0.0
630,222 + GFF632 0.83 +0.3
630,222 + GFF632 0.83 -0.2
630,222 + GFF632 0.83 +0.2
630,225 - GFF632 0.83 -0.9
630,227 + GFF632 0.84 +0.7
630,230 - GFF632 0.84 -1.6
630,230 - GFF632 0.84 +1.3
630,230 - GFF632 0.84 -1.2
630,230 - GFF632 0.84 -1.3

Or see this region's nucleotide sequence