Strain Fitness in Sphingobium sp. HT1-2 around GFF575

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF573 and GFF574 overlap by 44 nucleotidesGFF574 and GFF575 are separated by 90 nucleotidesGFF575 and GFF576 are separated by 121 nucleotidesGFF576 and GFF577 are separated by 174 nucleotides GFF573 - hypothetical protein, at 570,629 to 571,000 GFF573 GFF574 - hypothetical protein, at 570,957 to 571,745 GFF574 GFF575 - oligopeptide transporter, at 571,836 to 573,800 GFF575 GFF576 - hypothetical protein, at 573,922 to 574,044 GFF576 GFF577 - TonB-dependent receptor, at 574,219 to 577,011 GFF577 Position (kb) 571 572 573 574Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 570.836 kb on - strand, within GFF573at 570.839 kb on - strand, within GFF573at 570.854 kb on + strand, within GFF573at 570.862 kb on + strand, within GFF573at 570.870 kb on - strand, within GFF573at 570.912 kb on - strand, within GFF573at 570.994 kb on + strandat 570.997 kb on - strandat 571.002 kb on - strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.029 kb on + strandat 571.032 kb on - strandat 571.032 kb on - strandat 571.042 kb on - strand, within GFF574at 571.055 kb on + strand, within GFF574at 571.063 kb on - strand, within GFF574at 571.071 kb on - strand, within GFF574at 571.094 kb on + strand, within GFF574at 571.099 kb on + strand, within GFF574at 571.100 kb on + strand, within GFF574at 571.117 kb on - strand, within GFF574at 571.117 kb on - strand, within GFF574at 571.117 kb on - strand, within GFF574at 571.127 kb on - strand, within GFF574at 571.202 kb on + strand, within GFF574at 571.202 kb on + strand, within GFF574at 571.213 kb on + strand, within GFF574at 571.213 kb on + strand, within GFF574at 571.235 kb on + strand, within GFF574at 571.243 kb on - strand, within GFF574at 571.246 kb on + strand, within GFF574at 571.266 kb on - strand, within GFF574at 571.266 kb on - strand, within GFF574at 571.302 kb on - strand, within GFF574at 571.302 kb on - strand, within GFF574at 571.310 kb on - strand, within GFF574at 571.328 kb on + strand, within GFF574at 571.328 kb on + strand, within GFF574at 571.328 kb on + strand, within GFF574at 571.328 kb on + strand, within GFF574at 571.336 kb on - strand, within GFF574at 571.336 kb on - strand, within GFF574at 571.336 kb on - strand, within GFF574at 571.336 kb on - strand, within GFF574at 571.346 kb on + strand, within GFF574at 571.393 kb on + strand, within GFF574at 571.397 kb on + strand, within GFF574at 571.400 kb on - strand, within GFF574at 571.405 kb on - strand, within GFF574at 571.416 kb on + strand, within GFF574at 571.417 kb on + strand, within GFF574at 571.454 kb on - strand, within GFF574at 571.458 kb on - strand, within GFF574at 571.458 kb on - strand, within GFF574at 571.477 kb on + strand, within GFF574at 571.483 kb on + strand, within GFF574at 571.483 kb on + strand, within GFF574at 571.487 kb on - strand, within GFF574at 571.487 kb on - strand, within GFF574at 571.539 kb on + strand, within GFF574at 571.550 kb on + strand, within GFF574at 571.573 kb on + strand, within GFF574at 571.602 kb on + strand, within GFF574at 571.621 kb on - strand, within GFF574at 571.623 kb on + strand, within GFF574at 571.623 kb on + strand, within GFF574at 571.626 kb on - strand, within GFF574at 571.628 kb on + strand, within GFF574at 571.628 kb on + strand, within GFF574at 571.631 kb on - strand, within GFF574at 571.636 kb on - strand, within GFF574at 571.636 kb on - strand, within GFF574at 571.636 kb on - strand, within GFF574at 571.636 kb on - strand, within GFF574at 571.636 kb on - strand, within GFF574at 571.663 kb on + strand, within GFF574at 571.663 kb on + strand, within GFF574at 571.671 kb on - strandat 571.671 kb on - strandat 571.675 kb on + strandat 571.675 kb on + strandat 571.675 kb on + strandat 571.675 kb on + strandat 571.675 kb on + strandat 571.683 kb on - strandat 571.683 kb on - strandat 571.683 kb on - strandat 571.683 kb on - strandat 571.685 kb on + strandat 571.693 kb on - strandat 571.693 kb on - strandat 571.696 kb on + strandat 571.696 kb on + strandat 571.704 kb on - strandat 571.708 kb on - strandat 571.708 kb on - strandat 571.710 kb on + strandat 571.713 kb on - strandat 571.713 kb on - strandat 571.715 kb on + strandat 571.741 kb on - strandat 571.761 kb on + strandat 571.774 kb on - strandat 571.774 kb on - strandat 571.850 kb on + strandat 572.057 kb on - strand, within GFF575at 572.245 kb on - strand, within GFF575at 572.852 kb on + strand, within GFF575at 572.908 kb on - strand, within GFF575at 573.080 kb on - strand, within GFF575at 573.110 kb on - strand, within GFF575at 573.154 kb on - strand, within GFF575at 573.338 kb on + strand, within GFF575at 573.338 kb on + strand, within GFF575at 573.346 kb on - strand, within GFF575at 573.826 kb on - strandat 573.831 kb on - strandat 573.924 kb on + strandat 574.041 kb on + strandat 574.046 kb on + strandat 574.091 kb on + strandat 574.225 kb on + strandat 574.269 kb on + strandat 574.285 kb on + strandat 574.320 kb on - strandat 574.346 kb on + strandat 574.400 kb on + strandat 574.441 kb on + strandat 574.449 kb on - strandat 574.484 kb on - strandat 574.586 kb on - strand, within GFF577at 574.622 kb on + strand, within GFF577at 574.624 kb on + strand, within GFF577at 574.624 kb on + strand, within GFF577at 574.632 kb on - strand, within GFF577at 574.632 kb on - strand, within GFF577at 574.702 kb on - strand, within GFF577at 574.702 kb on - strand, within GFF577at 574.738 kb on - strand, within GFF577

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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570,836 - GFF573 0.56 -1.4
570,839 - GFF573 0.56 +0.4
570,854 + GFF573 0.60 +1.5
570,862 + GFF573 0.63 -0.5
570,870 - GFF573 0.65 -0.7
570,912 - GFF573 0.76 -0.3
570,994 + +0.6
570,997 - +0.1
571,002 - +1.6
571,024 + +0.5
571,024 + -0.5
571,024 + +0.1
571,024 + -1.1
571,024 + +0.3
571,024 + +0.6
571,024 + -0.3
571,029 + +0.2
571,032 - -0.1
571,032 - -0.9
571,042 - GFF574 0.11 +0.8
571,055 + GFF574 0.12 -1.0
571,063 - GFF574 0.13 +0.1
571,071 - GFF574 0.14 -1.3
571,094 + GFF574 0.17 +0.2
571,099 + GFF574 0.18 +0.1
571,100 + GFF574 0.18 -0.1
571,117 - GFF574 0.20 -1.5
571,117 - GFF574 0.20 +0.7
571,117 - GFF574 0.20 +1.2
571,127 - GFF574 0.22 -0.5
571,202 + GFF574 0.31 -2.3
571,202 + GFF574 0.31 -0.2
571,213 + GFF574 0.32 +2.0
571,213 + GFF574 0.32 -0.5
571,235 + GFF574 0.35 +0.4
571,243 - GFF574 0.36 +0.3
571,246 + GFF574 0.37 -0.8
571,266 - GFF574 0.39 -0.5
571,266 - GFF574 0.39 -1.6
571,302 - GFF574 0.44 -0.7
571,302 - GFF574 0.44 +1.2
571,310 - GFF574 0.45 +1.2
571,328 + GFF574 0.47 +0.7
571,328 + GFF574 0.47 +0.5
571,328 + GFF574 0.47 -1.1
571,328 + GFF574 0.47 +1.3
571,336 - GFF574 0.48 -1.9
571,336 - GFF574 0.48 +0.2
571,336 - GFF574 0.48 -0.0
571,336 - GFF574 0.48 -0.7
571,346 + GFF574 0.49 +0.7
571,393 + GFF574 0.55 -1.6
571,397 + GFF574 0.56 -0.3
571,400 - GFF574 0.56 +0.2
571,405 - GFF574 0.57 +0.7
571,416 + GFF574 0.58 -0.2
571,417 + GFF574 0.58 +0.2
571,454 - GFF574 0.63 -1.0
571,458 - GFF574 0.63 -0.6
571,458 - GFF574 0.63 -1.4
571,477 + GFF574 0.66 -0.0
571,483 + GFF574 0.67 -2.9
571,483 + GFF574 0.67 -2.5
571,487 - GFF574 0.67 +0.2
571,487 - GFF574 0.67 -2.0
571,539 + GFF574 0.74 +1.4
571,550 + GFF574 0.75 -0.1
571,573 + GFF574 0.78 +1.1
571,602 + GFF574 0.82 -1.4
571,621 - GFF574 0.84 +0.2
571,623 + GFF574 0.84 -1.4
571,623 + GFF574 0.84 +0.4
571,626 - GFF574 0.85 +1.0
571,628 + GFF574 0.85 -1.5
571,628 + GFF574 0.85 -0.7
571,631 - GFF574 0.85 -2.8
571,636 - GFF574 0.86 -1.5
571,636 - GFF574 0.86 -0.3
571,636 - GFF574 0.86 +0.8
571,636 - GFF574 0.86 -0.9
571,636 - GFF574 0.86 +1.0
571,663 + GFF574 0.89 -0.8
571,663 + GFF574 0.89 +0.2
571,671 - -0.4
571,671 - +0.9
571,675 + +0.5
571,675 + -0.5
571,675 + +0.3
571,675 + -0.1
571,675 + -0.2
571,683 - +0.8
571,683 - +1.2
571,683 - +2.0
571,683 - -0.4
571,685 + +0.4
571,693 - +1.4
571,693 - -0.1
571,696 + +0.5
571,696 + +0.2
571,704 - -2.0
571,708 - -0.2
571,708 - -0.3
571,710 + +0.8
571,713 - +2.2
571,713 - +0.2
571,715 + -0.0
571,741 - +0.7
571,761 + -0.1
571,774 - -0.9
571,774 - -0.5
571,850 + -0.6
572,057 - GFF575 0.11 -0.7
572,245 - GFF575 0.21 +0.3
572,852 + GFF575 0.52 +0.3
572,908 - GFF575 0.55 -0.7
573,080 - GFF575 0.63 -0.0
573,110 - GFF575 0.65 -0.7
573,154 - GFF575 0.67 +0.4
573,338 + GFF575 0.76 +0.3
573,338 + GFF575 0.76 +1.1
573,346 - GFF575 0.77 -0.5
573,826 - +1.8
573,831 - -0.3
573,924 + +1.5
574,041 + +0.1
574,046 + +0.3
574,091 + +0.6
574,225 + -1.4
574,269 + +0.4
574,285 + -1.2
574,320 - +0.9
574,346 + +0.1
574,400 + +0.9
574,441 + -1.0
574,449 - +0.9
574,484 - +0.1
574,586 - GFF577 0.13 +2.0
574,622 + GFF577 0.14 +0.1
574,624 + GFF577 0.15 +0.4
574,624 + GFF577 0.15 -1.9
574,632 - GFF577 0.15 +0.1
574,632 - GFF577 0.15 -0.7
574,702 - GFF577 0.17 -0.2
574,702 - GFF577 0.17 +1.1
574,738 - GFF577 0.19 -0.5

Or see this region's nucleotide sequence